Wall clock time and date at job start Tue Mar 31 2020 23:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39926 * 125.87470 * 2 1 4 4 C 1.35329 * 107.92827 * 179.80916 * 3 2 1 5 5 N 1.35216 * 107.71276 * 0.37285 * 4 3 2 6 6 C 1.40212 * 126.05247 * 179.89652 * 5 4 3 7 7 C 1.38953 * 119.99396 * 359.73389 * 6 5 4 8 8 C 1.38226 * 120.22464 * 180.02562 * 7 6 5 9 9 C 1.38009 * 120.22108 * 359.97438 * 8 7 6 10 10 C 1.39583 * 119.98650 * 359.97438 * 9 8 7 11 11 C 1.47859 * 120.11555 * 180.29608 * 10 9 8 12 12 O 1.21553 * 119.99672 * 35.81990 * 11 10 9 13 13 N 1.34774 * 120.00068 * 215.82175 * 11 10 9 14 14 C 1.46961 * 120.59628 * 5.48985 * 13 11 10 15 15 C 1.53815 * 108.40013 * 124.75832 * 14 13 11 16 16 N 1.46970 * 108.57774 * 49.63596 * 15 14 13 17 17 C 1.36931 * 120.58901 * 124.62559 * 16 15 14 18 18 H 1.08009 * 120.00043 * 205.03452 * 17 16 15 19 19 C 1.38818 * 120.00601 * 25.04001 * 17 16 15 20 20 N 1.31618 * 119.99612 * 16.46454 * 19 17 16 21 21 Si 1.86793 * 120.00037 * 196.46540 * 19 17 16 22 22 H 1.48495 * 109.47544 * 0.02562 * 21 19 17 23 23 H 1.48510 * 109.46902 * 119.99983 * 21 19 17 24 24 H 1.48501 * 109.47239 * 239.99649 * 21 19 17 25 25 C 1.46963 * 118.81386 * 304.64663 * 16 15 14 26 26 C 1.46970 * 120.59058 * 185.76942 * 13 11 10 27 27 C 1.38559 * 119.99574 * 179.70983 * 6 5 4 28 28 N 1.30874 * 125.88577 * 180.02562 * 2 1 3 29 29 H 1.09006 * 109.46530 * 269.97603 * 1 2 3 30 30 H 1.08998 * 109.46992 * 29.97898 * 1 2 3 31 31 H 1.08999 * 109.46684 * 149.98125 * 1 2 3 32 32 H 1.07992 * 126.03830 * 0.07923 * 3 2 1 33 33 H 1.08003 * 126.14516 * 180.22045 * 4 3 2 34 34 H 1.07997 * 119.89267 * 359.97438 * 7 6 5 35 35 H 1.08003 * 119.88526 * 180.02562 * 8 7 6 36 36 H 1.08000 * 120.00978 * 180.02562 * 9 8 7 37 37 H 1.09006 * 109.60786 * 244.54024 * 14 13 11 38 38 H 1.09004 * 109.60801 * 5.04923 * 14 13 11 39 39 H 1.09003 * 109.73999 * 289.84851 * 15 14 13 40 40 H 1.08998 * 109.53404 * 169.30601 * 15 14 13 41 41 H 0.96995 * 120.00286 * 180.02562 * 20 19 17 42 42 H 1.08999 * 109.60974 * 295.48264 * 25 16 15 43 43 H 1.08996 * 109.74747 * 175.05485 * 25 16 15 44 44 H 1.08997 * 109.61427 * 354.94297 * 26 13 11 45 45 H 1.09002 * 109.60827 * 115.28943 * 26 13 11 46 46 H 1.08004 * 120.10647 * 0.02562 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3270 1.1338 0.0000 4 6 3.6144 0.7168 0.0043 5 7 3.6089 -0.6353 -0.0015 6 6 4.7391 -1.4651 -0.0017 7 6 6.0113 -0.9061 -0.0012 8 6 7.1288 -1.7196 -0.0020 9 6 6.9885 -3.0926 -0.0027 10 6 5.7149 -3.6637 -0.0021 11 6 5.5613 -5.1343 0.0037 12 8 6.3463 -5.8248 0.6237 13 7 4.5509 -5.7090 -0.6784 14 6 3.6668 -4.8997 -1.5287 15 6 3.6781 -5.4956 -2.9467 16 7 3.4370 -6.9420 -2.8487 17 6 2.4099 -7.5258 -3.5410 18 1 1.9773 -8.4503 -3.1878 19 6 1.9247 -6.9296 -4.6970 20 7 2.6344 -6.0048 -5.3081 21 14 0.2648 -7.4398 -5.3850 22 1 -0.3287 -8.4897 -4.5186 23 1 -0.6385 -6.2616 -5.4234 24 1 0.4414 -7.9732 -6.7596 25 6 4.3177 -7.7506 -1.9940 26 6 4.3099 -7.1555 -0.5804 27 6 4.5874 -2.8423 -0.0019 28 7 2.2741 -1.0603 -0.0005 29 1 -0.3632 -0.0004 1.0278 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5141 32 1 1.9917 2.1604 0.0012 33 1 4.4892 1.3503 0.0088 34 1 6.1274 0.1676 -0.0011 35 1 8.1150 -1.2793 -0.0012 36 1 7.8640 -3.7250 -0.0029 37 1 2.6534 -4.9215 -1.1279 38 1 4.0289 -3.8720 -1.5592 39 1 4.6468 -5.3169 -3.4135 40 1 2.8913 -5.0331 -3.5427 41 1 2.2952 -5.5879 -6.1155 42 1 5.3319 -7.7325 -2.3930 43 1 3.9562 -8.7782 -1.9604 44 1 5.0968 -7.6180 0.0154 45 1 3.3425 -7.3342 -0.1109 46 1 3.5993 -3.2785 -0.0023 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323332600.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:29 Heat of formation + Delta-G solvation = 119.748318 kcal Electronic energy + Delta-G solvation = -29534.852343 eV Core-core repulsion = 25620.851337 eV Total energy + Delta-G solvation = -3914.001006 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.72895 -40.24689 -38.46464 -36.79485 -34.18356 -34.00229 -32.18062 -31.09658 -30.79493 -30.08166 -29.80315 -27.58309 -27.05252 -24.55759 -23.44614 -23.08238 -22.50124 -21.49811 -20.28694 -19.85787 -19.20613 -17.91599 -16.97000 -16.45465 -16.05961 -15.74768 -15.58601 -15.15944 -14.84624 -14.57306 -14.40783 -14.06225 -13.70254 -13.66699 -13.53233 -13.41567 -13.31642 -13.16192 -13.04563 -12.62502 -12.33934 -12.28074 -11.93128 -11.76067 -11.51950 -11.27196 -10.87453 -10.75461 -10.70701 -10.49871 -10.22095 -10.20678 -10.03139 -9.87141 -9.60057 -9.29039 -9.04042 -8.61369 -8.29258 -8.15602 -6.75695 -5.84595 -3.28152 0.58074 0.88555 1.96824 2.17555 2.55425 2.94710 3.31883 3.34046 3.41973 3.44152 3.70543 4.19084 4.42180 4.44449 4.60139 4.62266 4.83970 4.93618 5.03374 5.16658 5.28091 5.28445 5.34402 5.41944 5.45875 5.51514 5.61824 5.67667 5.78658 5.79848 5.86636 5.90706 6.03140 6.08885 6.12621 6.16815 6.23011 6.35430 6.40103 6.43571 6.49553 6.76193 6.90294 6.98961 7.21794 7.50722 7.52504 7.69684 7.84045 8.34204 8.43824 9.11503 9.74499 10.29266 11.22278 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008897 B = 0.004031 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3146.256876 B = 6944.859224 C = 9233.498419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.080 3.920 3 C -0.261 4.261 4 C 0.053 3.947 5 N -0.321 5.321 6 C 0.151 3.849 7 C -0.125 4.125 8 C -0.099 4.099 9 C -0.076 4.076 10 C -0.095 4.095 11 C 0.552 3.448 12 O -0.551 6.551 13 N -0.586 5.586 14 C 0.067 3.933 15 C 0.154 3.846 16 N -0.592 5.592 17 C -0.250 4.250 18 H 0.070 0.930 19 C -0.001 4.001 20 N -0.905 5.905 21 Si 0.905 3.095 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.290 1.290 25 C 0.132 3.868 26 C 0.095 3.905 27 C -0.088 4.088 28 N -0.282 5.282 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.153 0.847 33 H 0.177 0.823 34 H 0.132 0.868 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.067 0.933 38 H 0.082 0.918 39 H 0.022 0.978 40 H 0.111 0.889 41 H 0.254 0.746 42 H 0.024 0.976 43 H 0.068 0.932 44 H 0.084 0.916 45 H 0.065 0.935 46 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.089 15.952 11.439 19.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.088 4.088 3 C -0.289 4.289 4 C -0.089 4.089 5 N -0.095 5.095 6 C 0.058 3.942 7 C -0.146 4.146 8 C -0.118 4.118 9 C -0.095 4.095 10 C -0.099 4.099 11 C 0.340 3.660 12 O -0.431 6.431 13 N -0.317 5.317 14 C -0.057 4.057 15 C 0.028 3.972 16 N -0.315 5.315 17 C -0.380 4.380 18 H 0.088 0.912 19 C -0.198 4.198 20 N -0.550 5.550 21 Si 0.735 3.265 22 H -0.202 1.202 23 H -0.215 1.215 24 H -0.217 1.217 25 C 0.005 3.995 26 C -0.029 4.029 27 C -0.109 4.109 28 N -0.103 5.103 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.170 0.830 33 H 0.194 0.806 34 H 0.150 0.850 35 H 0.157 0.843 36 H 0.156 0.844 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.040 0.960 40 H 0.129 0.871 41 H 0.065 0.935 42 H 0.042 0.958 43 H 0.086 0.914 44 H 0.102 0.898 45 H 0.084 0.916 46 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 3.504 14.320 11.573 18.742 hybrid contribution -0.820 0.879 -0.557 1.325 sum 2.685 15.199 11.016 18.962 Atomic orbital electron populations 1.20232 0.86175 1.03805 1.03129 1.22570 0.97314 0.90611 0.98276 1.21473 0.91386 1.00016 1.16022 1.22584 0.99995 0.84345 1.01992 1.45771 1.04299 1.04111 1.55356 1.17370 0.83713 0.89656 1.03418 1.20903 0.90126 1.00575 1.02949 1.20894 0.98294 0.92885 0.99719 1.21285 0.96608 0.94984 0.96631 1.19893 0.93636 0.93686 1.02668 1.18197 0.81207 0.86902 0.79696 1.90729 1.43243 1.63908 1.45230 1.48010 1.29806 1.09375 1.44471 1.23265 0.93014 0.94678 0.94702 1.21413 1.01275 0.84440 0.90093 1.44050 1.32905 1.02342 1.52198 1.19311 1.07888 1.07819 1.02955 0.91192 1.25003 0.99289 0.99783 0.95769 1.69979 1.36295 1.29897 1.18870 0.86172 0.83806 0.77923 0.78593 1.20214 1.21482 1.21695 1.21280 0.94300 0.95012 0.88919 1.22268 1.01048 0.79383 1.00169 1.21304 1.00241 0.90898 0.98422 1.77511 0.85372 1.22625 1.24777 0.90337 0.90218 0.90386 0.82972 0.80610 0.84997 0.84311 0.84388 0.91467 0.90016 0.96032 0.87132 0.93533 0.95760 0.91408 0.89808 0.91644 0.83012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.66 10.45 36.01 0.38 -0.28 16 2 C 0.08 0.96 7.22 -82.37 -0.59 0.37 16 3 C -0.26 -2.61 10.74 -39.99 -0.43 -3.04 16 4 C 0.05 0.54 10.80 -17.10 -0.18 0.36 16 5 N -0.32 -4.28 3.80 -10.73 -0.04 -4.32 16 6 C 0.15 2.00 6.68 -83.64 -0.56 1.44 16 7 C -0.12 -1.27 9.45 -39.32 -0.37 -1.64 16 8 C -0.10 -0.99 10.02 -39.67 -0.40 -1.39 16 9 C -0.08 -0.98 9.61 -39.16 -0.38 -1.36 16 10 C -0.10 -1.49 5.29 -104.99 -0.56 -2.05 16 11 C 0.55 10.29 7.38 -12.32 -0.09 10.20 16 12 O -0.55 -11.39 16.25 5.32 0.09 -11.31 16 13 N -0.59 -11.23 2.94 -173.31 -0.51 -11.74 16 14 C 0.07 1.31 5.01 -3.37 -0.02 1.29 16 15 C 0.15 3.67 5.56 -3.36 -0.02 3.65 16 16 N -0.59 -14.72 2.98 -171.76 -0.51 -15.24 16 17 C -0.25 -6.74 9.62 -15.06 -0.14 -6.88 16 18 H 0.07 1.84 7.87 -52.48 -0.41 1.43 16 19 C 0.00 -0.02 4.97 -17.43 -0.09 -0.10 16 20 N -0.91 -25.77 10.89 55.49 0.60 -25.17 16 21 Si 0.91 21.35 29.58 -169.99 -5.03 16.32 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 C 0.13 2.81 6.67 -3.59 -0.02 2.78 16 26 C 0.10 1.80 6.60 -3.59 -0.02 1.78 16 27 C -0.09 -1.34 6.97 -38.99 -0.27 -1.61 16 28 N -0.28 -4.21 11.86 33.69 0.40 -3.81 16 29 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.18 1.08 7.03 -52.48 -0.37 0.71 16 34 H 0.13 0.91 6.72 -52.49 -0.35 0.56 16 35 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 36 H 0.14 1.70 8.01 -52.49 -0.42 1.28 16 37 H 0.07 1.32 8.11 -51.93 -0.42 0.90 16 38 H 0.08 1.48 4.36 -51.93 -0.23 1.26 16 39 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.11 2.91 5.69 -51.93 -0.30 2.62 16 41 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 42 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.07 1.36 7.93 -51.93 -0.41 0.94 16 44 H 0.08 1.53 6.99 -51.93 -0.36 1.16 16 45 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 46 H 0.15 2.49 5.73 -52.48 -0.30 2.19 16 LS Contribution 374.39 15.07 5.64 5.64 Total: -1.00 -33.36 374.39 -9.22 -42.58 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -6.09 Total: 3.52 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: -3.77 Total: 3.51 kcal Atomic # 7 Polarization: -60.21 SS G_CDS: -0.06 Total: -60.27 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.09 Total: -11.31 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.36 -9.22 -42.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323332600.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.331 kcal (2) G-P(sol) polarization free energy of solvation -33.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds