Wall clock time and date at job start Tue Mar 31 2020 23:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39926 * 125.87470 * 2 1 4 4 C 1.35329 * 107.92827 * 179.80916 * 3 2 1 5 5 N 1.35216 * 107.71276 * 0.37285 * 4 3 2 6 6 C 1.40212 * 126.05247 * 179.89652 * 5 4 3 7 7 C 1.38953 * 119.99396 * 359.73389 * 6 5 4 8 8 C 1.38226 * 120.22464 * 180.02562 * 7 6 5 9 9 C 1.38009 * 120.22108 * 359.97438 * 8 7 6 10 10 C 1.39583 * 119.98650 * 359.97438 * 9 8 7 11 11 C 1.47859 * 120.11555 * 180.29608 * 10 9 8 12 12 O 1.21553 * 119.99672 * 35.81990 * 11 10 9 13 13 N 1.34774 * 120.00068 * 215.82175 * 11 10 9 14 14 C 1.46961 * 120.59628 * 5.48985 * 13 11 10 15 15 C 1.53815 * 108.40013 * 124.75832 * 14 13 11 16 16 N 1.46970 * 108.57774 * 49.63596 * 15 14 13 17 17 C 1.36931 * 120.58901 * 124.62559 * 16 15 14 18 18 H 1.08009 * 120.00043 * 205.03452 * 17 16 15 19 19 C 1.38818 * 120.00601 * 25.04001 * 17 16 15 20 20 N 1.31618 * 119.99612 * 16.46454 * 19 17 16 21 21 Si 1.86793 * 120.00037 * 196.46540 * 19 17 16 22 22 H 1.48495 * 109.47544 * 0.02562 * 21 19 17 23 23 H 1.48510 * 109.46902 * 119.99983 * 21 19 17 24 24 H 1.48501 * 109.47239 * 239.99649 * 21 19 17 25 25 C 1.46963 * 118.81386 * 304.64663 * 16 15 14 26 26 C 1.46970 * 120.59058 * 185.76942 * 13 11 10 27 27 C 1.38559 * 119.99574 * 179.70983 * 6 5 4 28 28 N 1.30874 * 125.88577 * 180.02562 * 2 1 3 29 29 H 1.09006 * 109.46530 * 269.97603 * 1 2 3 30 30 H 1.08998 * 109.46992 * 29.97898 * 1 2 3 31 31 H 1.08999 * 109.46684 * 149.98125 * 1 2 3 32 32 H 1.07992 * 126.03830 * 0.07923 * 3 2 1 33 33 H 1.08003 * 126.14516 * 180.22045 * 4 3 2 34 34 H 1.07997 * 119.89267 * 359.97438 * 7 6 5 35 35 H 1.08003 * 119.88526 * 180.02562 * 8 7 6 36 36 H 1.08000 * 120.00978 * 180.02562 * 9 8 7 37 37 H 1.09006 * 109.60786 * 244.54024 * 14 13 11 38 38 H 1.09004 * 109.60801 * 5.04923 * 14 13 11 39 39 H 1.09003 * 109.73999 * 289.84851 * 15 14 13 40 40 H 1.08998 * 109.53404 * 169.30601 * 15 14 13 41 41 H 0.96995 * 120.00286 * 180.02562 * 20 19 17 42 42 H 1.08999 * 109.60974 * 295.48264 * 25 16 15 43 43 H 1.08996 * 109.74747 * 175.05485 * 25 16 15 44 44 H 1.08997 * 109.61427 * 354.94297 * 26 13 11 45 45 H 1.09002 * 109.60827 * 115.28943 * 26 13 11 46 46 H 1.08004 * 120.10647 * 0.02562 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3270 1.1338 0.0000 4 6 3.6144 0.7168 0.0043 5 7 3.6089 -0.6353 -0.0015 6 6 4.7391 -1.4651 -0.0017 7 6 6.0113 -0.9061 -0.0012 8 6 7.1288 -1.7196 -0.0020 9 6 6.9885 -3.0926 -0.0027 10 6 5.7149 -3.6637 -0.0021 11 6 5.5613 -5.1343 0.0037 12 8 6.3463 -5.8248 0.6237 13 7 4.5509 -5.7090 -0.6784 14 6 3.6668 -4.8997 -1.5287 15 6 3.6781 -5.4956 -2.9467 16 7 3.4370 -6.9420 -2.8487 17 6 2.4099 -7.5258 -3.5410 18 1 1.9773 -8.4503 -3.1878 19 6 1.9247 -6.9296 -4.6970 20 7 2.6344 -6.0048 -5.3081 21 14 0.2648 -7.4398 -5.3850 22 1 -0.3287 -8.4897 -4.5186 23 1 -0.6385 -6.2616 -5.4234 24 1 0.4414 -7.9732 -6.7596 25 6 4.3177 -7.7506 -1.9940 26 6 4.3099 -7.1555 -0.5804 27 6 4.5874 -2.8423 -0.0019 28 7 2.2741 -1.0603 -0.0005 29 1 -0.3632 -0.0004 1.0278 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5141 32 1 1.9917 2.1604 0.0012 33 1 4.4892 1.3503 0.0088 34 1 6.1274 0.1676 -0.0011 35 1 8.1150 -1.2793 -0.0012 36 1 7.8640 -3.7250 -0.0029 37 1 2.6534 -4.9215 -1.1279 38 1 4.0289 -3.8720 -1.5592 39 1 4.6468 -5.3169 -3.4135 40 1 2.8913 -5.0331 -3.5427 41 1 2.2952 -5.5879 -6.1155 42 1 5.3319 -7.7325 -2.3930 43 1 3.9562 -8.7782 -1.9604 44 1 5.0968 -7.6180 0.0154 45 1 3.3425 -7.3342 -0.1109 46 1 3.5993 -3.2785 -0.0023 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323332600.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:28 Heat of formation + Delta-G solvation = 100.180267 kcal Electronic energy + Delta-G solvation = -29535.700877 eV Core-core repulsion = 25620.851337 eV Total energy + Delta-G solvation = -3914.849540 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.58843 -41.56816 -39.63115 -38.49520 -35.78672 -35.07859 -33.68221 -32.50510 -31.85848 -31.56640 -30.75637 -28.87952 -28.38968 -26.10344 -24.95046 -24.49625 -23.61570 -22.73330 -21.63763 -20.72865 -20.52955 -19.32813 -18.40890 -17.82450 -17.28855 -17.11259 -16.73361 -16.61431 -16.33860 -15.85829 -15.54515 -15.38965 -15.19507 -15.18889 -14.91431 -14.68173 -14.41624 -14.34633 -14.03089 -13.76053 -13.46459 -13.33514 -13.15132 -13.06228 -12.82358 -12.75161 -12.61873 -12.51311 -12.24674 -12.08890 -11.93257 -11.75144 -11.58497 -11.13455 -11.03787 -10.65925 -10.13921 -10.11094 -9.94220 -9.06413 -8.75811 -7.91501 -5.39191 -0.36300 -0.10664 1.09512 1.34168 1.45390 1.47586 1.58009 1.62352 1.78169 1.90351 2.47734 2.65499 3.16443 3.23103 3.50817 3.53715 3.71163 3.81655 4.00965 4.02640 4.09717 4.14286 4.15377 4.25601 4.31426 4.44646 4.48274 4.53744 4.64937 4.71133 4.71249 4.74573 4.76570 4.81956 4.95664 4.97892 5.06166 5.13210 5.15550 5.24201 5.26202 5.42914 5.54029 5.55118 5.59329 5.72368 6.17295 6.28626 6.30462 6.66702 6.94268 7.04966 7.73143 8.25347 9.13557 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008897 B = 0.004031 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3146.256876 B = 6944.859224 C = 9233.498419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.068 3.932 3 C -0.265 4.265 4 C 0.055 3.945 5 N -0.337 5.337 6 C 0.140 3.860 7 C -0.107 4.107 8 C -0.080 4.080 9 C -0.084 4.084 10 C -0.121 4.121 11 C 0.552 3.448 12 O -0.576 6.576 13 N -0.594 5.594 14 C 0.092 3.908 15 C 0.163 3.837 16 N -0.609 5.609 17 C -0.263 4.263 18 H 0.075 0.925 19 C -0.050 4.050 20 N -0.936 5.936 21 Si 0.971 3.029 22 H -0.266 1.266 23 H -0.289 1.289 24 H -0.292 1.292 25 C 0.133 3.867 26 C 0.103 3.897 27 C -0.107 4.107 28 N -0.343 5.343 29 H 0.091 0.909 30 H 0.104 0.896 31 H 0.061 0.939 32 H 0.184 0.816 33 H 0.221 0.779 34 H 0.177 0.823 35 H 0.185 0.815 36 H 0.140 0.860 37 H 0.063 0.937 38 H 0.097 0.903 39 H -0.004 1.004 40 H 0.083 0.917 41 H 0.252 0.748 42 H 0.012 0.988 43 H 0.079 0.921 44 H 0.093 0.907 45 H 0.073 0.927 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.752 18.845 12.410 22.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.099 4.099 3 C -0.293 4.293 4 C -0.086 4.086 5 N -0.112 5.112 6 C 0.048 3.952 7 C -0.127 4.127 8 C -0.098 4.098 9 C -0.103 4.103 10 C -0.125 4.125 11 C 0.342 3.658 12 O -0.457 6.457 13 N -0.324 5.324 14 C -0.032 4.032 15 C 0.037 3.963 16 N -0.332 5.332 17 C -0.393 4.393 18 H 0.092 0.908 19 C -0.245 4.245 20 N -0.583 5.583 21 Si 0.799 3.201 22 H -0.190 1.190 23 H -0.215 1.215 24 H -0.219 1.219 25 C 0.007 3.993 26 C -0.021 4.021 27 C -0.128 4.128 28 N -0.164 5.164 29 H 0.109 0.891 30 H 0.123 0.877 31 H 0.080 0.920 32 H 0.201 0.799 33 H 0.237 0.763 34 H 0.194 0.806 35 H 0.202 0.798 36 H 0.158 0.842 37 H 0.081 0.919 38 H 0.115 0.885 39 H 0.014 0.986 40 H 0.101 0.899 41 H 0.061 0.939 42 H 0.030 0.970 43 H 0.098 0.902 44 H 0.111 0.889 45 H 0.091 0.909 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 4.167 17.213 12.572 21.718 hybrid contribution -0.971 0.070 -0.820 1.273 sum 3.195 17.283 11.752 21.143 Atomic orbital electron populations 1.20351 0.84644 1.04233 1.04062 1.23199 0.98590 0.91012 0.97089 1.21920 0.91128 1.00837 1.15365 1.23391 1.01729 0.83299 1.00142 1.45887 1.03734 1.05254 1.56321 1.17647 0.85178 0.89064 1.03343 1.21427 0.88421 1.02846 1.00018 1.21378 1.00322 0.91257 0.96892 1.21496 0.95332 0.96793 0.96705 1.19718 0.95236 0.91635 1.05910 1.18718 0.80090 0.88421 0.78598 1.90694 1.43898 1.65020 1.46138 1.48045 1.30200 1.09366 1.44799 1.22894 0.93129 0.95142 0.92005 1.21169 0.98689 0.84408 0.92056 1.44293 1.33342 1.03024 1.52555 1.19651 1.08471 1.08019 1.03117 0.90765 1.25764 1.02411 1.00088 0.96233 1.70140 1.37800 1.31137 1.19223 0.85152 0.79703 0.77622 0.77640 1.18997 1.21540 1.21903 1.21362 0.92989 0.95494 0.89502 1.22141 1.01827 0.79534 0.98574 1.21061 0.98915 0.92277 1.00539 1.77469 0.86788 1.24767 1.27354 0.89081 0.87729 0.91953 0.79871 0.76259 0.80567 0.79794 0.84169 0.91873 0.88527 0.98569 0.89858 0.93899 0.96976 0.90221 0.88887 0.90863 0.85434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.25 10.45 71.24 0.74 -0.51 16 2 C 0.07 1.59 7.22 43.11 0.31 1.90 16 3 C -0.26 -4.59 10.74 22.01 0.24 -4.35 16 4 C 0.06 0.94 10.80 83.50 0.90 1.84 16 5 N -0.34 -8.54 3.80 -187.86 -0.71 -9.25 16 6 C 0.14 3.51 6.68 38.05 0.25 3.77 16 7 C -0.11 -1.74 9.45 22.44 0.21 -1.53 16 8 C -0.08 -1.28 10.02 22.21 0.22 -1.05 16 9 C -0.08 -2.04 9.61 22.54 0.22 -1.83 16 10 C -0.12 -3.84 5.29 -20.10 -0.11 -3.95 16 11 C 0.55 21.16 7.38 86.79 0.64 21.80 16 12 O -0.58 -24.27 16.25 -3.88 -0.06 -24.34 16 13 N -0.59 -23.59 2.94 -820.51 -2.41 -26.00 16 14 C 0.09 3.78 5.01 86.57 0.43 4.21 16 15 C 0.16 8.18 5.56 86.56 0.48 8.66 16 16 N -0.61 -31.33 2.98 -697.31 -2.08 -33.41 16 17 C -0.26 -14.45 9.62 84.04 0.81 -13.64 16 18 H 0.07 3.93 7.87 -2.91 -0.02 3.91 16 19 C -0.05 -2.78 4.97 84.86 0.42 -2.36 16 20 N -0.94 -55.13 10.89 21.65 0.24 -54.89 16 21 Si 0.97 44.64 29.58 68.60 2.03 46.66 16 22 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 23 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 24 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 25 C 0.13 5.80 6.67 86.42 0.58 6.38 16 26 C 0.10 3.98 6.60 86.42 0.57 4.55 16 27 C -0.11 -3.31 6.97 22.65 0.16 -3.15 16 28 N -0.34 -10.36 11.86 -47.33 -0.56 -10.92 16 29 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 30 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.18 1.85 8.06 -2.91 -0.02 1.83 16 33 H 0.22 1.44 7.03 -2.91 -0.02 1.42 16 34 H 0.18 1.28 6.72 -2.91 -0.02 1.26 16 35 H 0.18 1.30 8.06 -2.91 -0.02 1.28 16 36 H 0.14 3.29 8.01 -2.91 -0.02 3.27 16 37 H 0.06 2.63 8.11 -2.38 -0.02 2.61 16 38 H 0.10 3.71 4.36 -2.39 -0.01 3.70 16 39 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 40 H 0.08 4.64 5.69 -2.39 -0.01 4.63 16 41 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 42 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.08 3.23 7.93 -2.39 -0.02 3.21 16 44 H 0.09 3.43 6.99 -2.39 -0.02 3.42 16 45 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 46 H 0.13 4.47 5.73 -2.91 -0.02 4.45 16 Total: -1.00 -76.92 374.39 4.52 -72.40 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: 1.00 Total: 19.01 kcal Atomic # 6 Polarization: 13.65 SS G_CDS: 7.08 Total: 20.74 kcal Atomic # 7 Polarization: -128.95 SS G_CDS: -5.53 Total: -134.48 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -0.06 Total: -24.34 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Total: -76.92 4.52 -72.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323332600.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.584 kcal (2) G-P(sol) polarization free energy of solvation -76.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds