Wall clock time and date at job start Tue Mar 31 2020 23:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 110.88717 * 2 1 4 4 N 1.46502 * 109.47043 * 303.87503 * 3 2 1 5 5 C 1.36932 * 120.00125 * 180.02562 * 4 3 2 6 6 H 1.07995 * 120.00159 * 0.02562 * 5 4 3 7 7 C 1.38818 * 119.99765 * 180.02562 * 5 4 3 8 8 N 1.31618 * 120.00180 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99751 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47432 * 89.99619 * 9 7 5 11 11 H 1.48501 * 109.46825 * 209.99962 * 9 7 5 12 12 H 1.48501 * 109.47062 * 329.99722 * 9 7 5 13 13 C 1.55164 * 111.00344 * 123.87824 * 2 1 3 14 14 C 1.54319 * 102.94275 * 82.61088 * 13 2 1 15 15 N 1.47022 * 107.27004 * 22.19166 * 14 13 2 16 16 C 1.34782 * 125.64507 * 181.01959 * 15 14 13 17 17 O 1.21490 * 119.99782 * 180.02562 * 16 15 14 18 18 C 1.48349 * 120.00234 * 0.02898 * 16 15 14 19 19 C 1.40165 * 119.20830 * 179.97438 * 18 16 15 20 20 C 1.36615 * 119.71463 * 179.97438 * 19 18 16 21 21 C 1.40600 * 118.20511 * 359.97438 * 20 19 18 22 22 C 1.40741 * 121.37545 * 180.02562 * 21 20 19 23 23 C 1.36592 * 118.12625 * 179.97438 * 22 21 20 24 24 C 1.39429 * 119.84863 * 0.25879 * 23 22 21 25 25 N 1.31014 * 121.83822 * 359.45531 * 24 23 22 26 26 C 1.33863 * 121.42406 * 0.54984 * 25 24 23 27 27 N 1.31889 * 119.20266 * 359.97438 * 18 16 15 28 28 C 1.47424 * 108.70616 * 1.29004 * 15 14 13 29 29 H 1.09003 * 109.47115 * 296.12039 * 1 2 3 30 30 H 1.09003 * 109.46696 * 56.12319 * 1 2 3 31 31 H 1.09000 * 109.46719 * 176.12123 * 1 2 3 32 32 H 1.08996 * 109.47511 * 63.87775 * 3 2 1 33 33 H 1.09006 * 109.47131 * 183.88241 * 3 2 1 34 34 H 0.97009 * 119.99534 * 0.02562 * 4 3 2 35 35 H 0.96995 * 119.99471 * 180.02562 * 8 7 5 36 36 H 1.09003 * 110.71875 * 324.24467 * 13 2 1 37 37 H 1.09001 * 110.86823 * 201.04832 * 13 2 1 38 38 H 1.08997 * 109.88269 * 262.77740 * 14 13 2 39 39 H 1.08998 * 109.88470 * 141.61043 * 14 13 2 40 40 H 1.08006 * 120.13962 * 359.95380 * 19 18 16 41 41 H 1.07999 * 120.90249 * 180.02562 * 20 19 18 42 42 H 1.07994 * 120.93799 * 0.02562 * 22 21 20 43 43 H 1.08002 * 120.07077 * 179.97438 * 23 22 21 44 44 H 1.07998 * 119.07579 * 179.74127 * 24 23 22 45 45 H 1.08999 * 110.36738 * 94.47801 * 28 15 14 46 46 H 1.08997 * 110.36573 * 216.80676 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4294 0.0000 4 7 1.5303 2.1602 -1.1468 5 6 1.8804 3.4675 -1.3549 6 1 2.5587 3.9599 -0.6738 7 6 1.3633 4.1600 -2.4412 8 7 0.5362 3.5601 -3.2709 9 14 1.8414 5.9433 -2.7255 10 1 3.0532 6.0005 -3.5819 11 1 0.7250 6.6537 -3.3993 12 1 2.1262 6.5934 -1.4210 13 6 2.0861 -0.8075 1.2026 14 6 2.0295 -2.2643 0.6967 15 7 2.0153 -2.2157 -0.7727 16 6 1.9494 -3.2830 -1.5932 17 8 1.9446 -3.1238 -2.7976 18 6 1.8827 -4.6520 -1.0257 19 6 1.8141 -5.7499 -1.8943 20 6 1.7528 -7.0152 -1.3828 21 6 1.7616 -7.1682 0.0148 22 6 1.7015 -8.4407 0.6131 23 6 1.7148 -8.5123 1.9770 24 6 1.7809 -7.3424 2.7327 25 7 1.8421 -6.1599 2.1719 26 6 1.8331 -6.0174 0.8409 27 7 1.8893 -4.8067 0.2841 28 6 2.0917 -0.8069 -1.2000 29 1 -0.3633 0.4524 0.9227 30 1 -0.3633 0.5729 -0.8532 31 1 -0.3633 -1.0253 -0.0695 32 1 1.7823 1.9303 0.9226 33 1 3.1630 1.4033 -0.0696 34 1 0.9213 1.7178 -1.7587 35 1 0.1753 4.0440 -4.0302 36 1 1.4520 -0.6789 2.0798 37 1 3.1127 -0.5159 1.4246 38 1 1.1229 -2.7479 1.0603 39 1 2.9074 -2.8108 1.0411 40 1 1.8094 -5.5962 -2.9633 41 1 1.6998 -7.8749 -2.0344 42 1 1.6473 -9.3354 0.0107 43 1 1.6696 -9.4726 2.4690 44 1 1.7865 -7.4132 3.8103 45 1 3.1261 -0.5261 -1.3980 46 1 1.4775 -0.6453 -2.0859 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324735193.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:14 Heat of formation + Delta-G solvation = 63.499929 kcal Electronic energy + Delta-G solvation = -28885.557252 eV Core-core repulsion = 24969.117133 eV Total energy + Delta-G solvation = -3916.440119 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.66438 -40.12112 -38.44240 -37.45632 -34.91211 -34.43950 -32.68522 -31.51489 -31.29579 -30.36694 -28.98054 -27.07120 -26.06137 -25.18517 -24.42114 -23.40598 -22.91756 -21.83985 -20.47736 -18.99854 -18.72362 -17.94468 -17.48890 -16.98825 -16.32647 -16.09140 -15.66989 -15.26252 -15.08079 -14.63790 -14.55341 -14.32649 -14.01844 -13.81088 -13.58664 -13.52115 -13.14269 -12.93022 -12.64975 -12.43345 -12.29436 -12.08157 -11.92058 -11.61980 -11.55978 -11.51105 -10.98860 -10.92501 -10.78818 -10.40984 -10.32569 -10.23858 -10.14533 -9.88268 -9.56464 -9.38889 -9.33524 -9.32108 -8.82240 -8.44311 -6.86005 -5.70531 -2.99014 -0.34998 0.08037 1.43877 2.04298 2.83847 3.01102 3.28585 3.48052 3.52879 3.54650 3.76118 3.94614 4.12832 4.17191 4.29380 4.36085 4.57768 4.63508 4.80206 4.85998 4.89407 4.90333 5.17185 5.20261 5.36251 5.42293 5.53770 5.55982 5.65296 5.67745 5.73650 5.78374 5.96515 6.05338 6.11033 6.14492 6.17913 6.23386 6.30367 6.36998 6.45436 6.58077 6.72891 6.82569 6.90061 6.92114 7.55983 7.66473 7.75598 8.11227 8.48193 9.59434 10.17155 10.51782 11.52299 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026121 B = 0.002291 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.695972 B =12221.367619 C =12987.994660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.077 4.077 3 C 0.170 3.830 4 N -0.731 5.731 5 C -0.238 4.238 6 H 0.070 0.930 7 C -0.014 4.014 8 N -0.932 5.932 9 Si 0.906 3.094 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C -0.127 4.127 14 C 0.120 3.880 15 N -0.589 5.589 16 C 0.573 3.427 17 O -0.528 6.528 18 C 0.154 3.846 19 C -0.128 4.128 20 C -0.048 4.048 21 C -0.145 4.145 22 C -0.046 4.046 23 C -0.175 4.175 24 C 0.158 3.842 25 N -0.457 5.457 26 C 0.299 3.701 27 N -0.429 5.429 28 C 0.119 3.881 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.044 0.956 32 H 0.025 0.975 33 H 0.022 0.978 34 H 0.385 0.615 35 H 0.255 0.745 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.158 0.842 41 H 0.150 0.850 42 H 0.144 0.856 43 H 0.144 0.856 44 H 0.169 0.831 45 H 0.075 0.925 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.076 -29.533 11.506 31.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.079 4.079 3 C 0.042 3.958 4 N -0.376 5.376 5 C -0.370 4.370 6 H 0.088 0.912 7 C -0.210 4.210 8 N -0.581 5.581 9 Si 0.738 3.262 10 H -0.218 1.218 11 H -0.219 1.219 12 H -0.208 1.208 13 C -0.165 4.165 14 C -0.002 4.002 15 N -0.321 5.321 16 C 0.359 3.641 17 O -0.404 6.404 18 C -0.003 4.003 19 C -0.148 4.148 20 C -0.075 4.075 21 C -0.150 4.150 22 C -0.072 4.072 23 C -0.195 4.195 24 C -0.020 4.020 25 N -0.166 5.166 26 C 0.061 3.939 27 N -0.141 5.141 28 C -0.002 4.002 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.063 0.937 32 H 0.043 0.957 33 H 0.039 0.961 34 H 0.220 0.780 35 H 0.065 0.935 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.175 0.825 41 H 0.168 0.832 42 H 0.162 0.838 43 H 0.162 0.838 44 H 0.186 0.814 45 H 0.093 0.907 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.235 -27.764 11.876 30.280 hybrid contribution -0.029 -0.736 -1.346 1.534 sum 2.206 -28.499 10.530 30.463 Atomic orbital electron populations 1.21670 0.93314 1.00728 1.02970 1.21995 0.96504 0.95892 0.93466 1.20583 0.95627 0.87737 0.91896 1.42417 1.55929 1.10833 1.28417 1.19212 1.22242 0.87917 1.07581 0.91212 1.24737 1.00013 0.98300 0.97963 1.69658 1.35470 1.36280 1.16695 0.86199 0.77394 0.84975 0.77666 1.21789 1.21855 1.20826 1.22823 1.02076 0.93522 0.98112 1.22113 1.02813 0.96747 0.78556 1.48409 1.69179 1.06514 1.07977 1.17451 0.78504 0.82601 0.85587 1.90829 1.51060 1.85029 1.13446 1.21517 0.95139 0.95055 0.88582 1.21872 0.98618 0.91642 1.02693 1.21462 0.94736 0.98064 0.93235 1.19755 1.03751 0.95801 0.95678 1.21509 0.94049 0.96282 0.95396 1.22064 1.01970 1.00747 0.94740 1.23157 0.91109 0.86609 1.01078 1.67650 1.12251 1.26880 1.09798 1.19310 0.96959 0.87790 0.89856 1.67764 1.10739 1.23889 1.11735 1.22508 1.01877 0.77398 0.98454 0.92507 0.91032 0.93668 0.95724 0.96051 0.78032 0.93533 0.89993 0.90535 0.90604 0.90870 0.82470 0.83238 0.83840 0.83798 0.81426 0.90650 0.89550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.17 8.42 37.16 0.31 -1.86 16 2 C -0.08 -1.29 0.63 -152.24 -0.10 -1.38 16 3 C 0.17 3.40 5.25 -4.04 -0.02 3.38 16 4 N -0.73 -18.49 5.18 -59.91 -0.31 -18.81 16 5 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 6 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 7 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 8 N -0.93 -28.64 13.06 55.49 0.72 -27.92 16 9 Si 0.91 22.78 29.55 -169.99 -5.02 17.76 16 10 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 11 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 C -0.13 -1.70 5.91 -24.89 -0.15 -1.85 16 14 C 0.12 1.65 5.07 -3.07 -0.02 1.64 16 15 N -0.59 -9.40 3.31 -171.31 -0.57 -9.96 16 16 C 0.57 9.36 7.84 -12.10 -0.09 9.27 16 17 O -0.53 -10.02 16.53 5.37 0.09 -9.94 16 18 C 0.15 2.09 6.73 -82.96 -0.56 1.53 16 19 C -0.13 -1.35 9.54 -39.44 -0.38 -1.72 16 20 C -0.05 -0.38 9.89 -39.28 -0.39 -0.77 16 21 C -0.14 -1.30 5.75 -106.68 -0.61 -1.91 16 22 C -0.05 -0.26 9.90 -39.23 -0.39 -0.64 16 23 C -0.18 -0.82 10.04 -39.73 -0.40 -1.22 16 24 C 0.16 1.06 11.14 -17.46 -0.19 0.86 16 25 N -0.46 -5.05 10.43 -12.60 -0.13 -5.18 16 26 C 0.30 3.57 7.62 -157.91 -1.20 2.37 16 27 N -0.43 -5.78 6.85 -9.19 -0.06 -5.85 16 28 C 0.12 2.10 5.62 -2.41 -0.01 2.09 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.07 1.40 6.65 -51.93 -0.35 1.05 16 31 H 0.04 0.71 7.91 -51.93 -0.41 0.30 16 32 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.02 0.44 8.07 -51.93 -0.42 0.02 16 34 H 0.38 10.27 6.23 -40.82 -0.25 10.02 16 35 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 36 H 0.08 0.98 8.05 -51.93 -0.42 0.57 16 37 H 0.08 0.97 8.04 -51.93 -0.42 0.55 16 38 H 0.08 1.06 7.40 -51.93 -0.38 0.68 16 39 H 0.07 0.99 7.53 -51.93 -0.39 0.60 16 40 H 0.16 1.53 7.60 -52.48 -0.40 1.13 16 41 H 0.15 0.60 8.06 -52.49 -0.42 0.18 16 42 H 0.14 0.34 8.06 -52.49 -0.42 -0.08 16 43 H 0.14 0.20 8.06 -52.49 -0.42 -0.23 16 44 H 0.17 0.55 8.06 -52.49 -0.42 0.13 16 45 H 0.08 1.37 7.99 -51.93 -0.41 0.96 16 46 H 0.09 1.73 7.95 -51.93 -0.41 1.32 16 LS Contribution 379.15 15.07 5.71 5.71 Total: -1.00 -35.31 379.15 -10.36 -45.67 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -6.35 Total: 6.11 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: -4.44 Total: 2.40 kcal Atomic # 7 Polarization: -67.37 SS G_CDS: -0.35 Total: -67.71 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.09 Total: -9.94 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.31 -10.36 -45.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324735193.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.173 kcal (2) G-P(sol) polarization free energy of solvation -35.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds