Wall clock time and date at job start Tue Mar 31 2020 23:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 110.88717 * 2 1 4 4 N 1.46502 * 109.47043 * 303.87503 * 3 2 1 5 5 C 1.36932 * 120.00125 * 180.02562 * 4 3 2 6 6 H 1.07995 * 120.00159 * 0.02562 * 5 4 3 7 7 C 1.38818 * 119.99765 * 180.02562 * 5 4 3 8 8 N 1.31618 * 120.00180 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99751 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47432 * 89.99619 * 9 7 5 11 11 H 1.48501 * 109.46825 * 209.99962 * 9 7 5 12 12 H 1.48501 * 109.47062 * 329.99722 * 9 7 5 13 13 C 1.55164 * 111.00344 * 123.87824 * 2 1 3 14 14 C 1.54319 * 102.94275 * 82.61088 * 13 2 1 15 15 N 1.47022 * 107.27004 * 22.19166 * 14 13 2 16 16 C 1.34782 * 125.64507 * 181.01959 * 15 14 13 17 17 O 1.21490 * 119.99782 * 180.02562 * 16 15 14 18 18 C 1.48349 * 120.00234 * 0.02898 * 16 15 14 19 19 C 1.40165 * 119.20830 * 179.97438 * 18 16 15 20 20 C 1.36615 * 119.71463 * 179.97438 * 19 18 16 21 21 C 1.40600 * 118.20511 * 359.97438 * 20 19 18 22 22 C 1.40741 * 121.37545 * 180.02562 * 21 20 19 23 23 C 1.36592 * 118.12625 * 179.97438 * 22 21 20 24 24 C 1.39429 * 119.84863 * 0.25879 * 23 22 21 25 25 N 1.31014 * 121.83822 * 359.45531 * 24 23 22 26 26 C 1.33863 * 121.42406 * 0.54984 * 25 24 23 27 27 N 1.31889 * 119.20266 * 359.97438 * 18 16 15 28 28 C 1.47424 * 108.70616 * 1.29004 * 15 14 13 29 29 H 1.09003 * 109.47115 * 296.12039 * 1 2 3 30 30 H 1.09003 * 109.46696 * 56.12319 * 1 2 3 31 31 H 1.09000 * 109.46719 * 176.12123 * 1 2 3 32 32 H 1.08996 * 109.47511 * 63.87775 * 3 2 1 33 33 H 1.09006 * 109.47131 * 183.88241 * 3 2 1 34 34 H 0.97009 * 119.99534 * 0.02562 * 4 3 2 35 35 H 0.96995 * 119.99471 * 180.02562 * 8 7 5 36 36 H 1.09003 * 110.71875 * 324.24467 * 13 2 1 37 37 H 1.09001 * 110.86823 * 201.04832 * 13 2 1 38 38 H 1.08997 * 109.88269 * 262.77740 * 14 13 2 39 39 H 1.08998 * 109.88470 * 141.61043 * 14 13 2 40 40 H 1.08006 * 120.13962 * 359.95380 * 19 18 16 41 41 H 1.07999 * 120.90249 * 180.02562 * 20 19 18 42 42 H 1.07994 * 120.93799 * 0.02562 * 22 21 20 43 43 H 1.08002 * 120.07077 * 179.97438 * 23 22 21 44 44 H 1.07998 * 119.07579 * 179.74127 * 24 23 22 45 45 H 1.08999 * 110.36738 * 94.47801 * 28 15 14 46 46 H 1.08997 * 110.36573 * 216.80676 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4294 0.0000 4 7 1.5303 2.1602 -1.1468 5 6 1.8804 3.4675 -1.3549 6 1 2.5587 3.9599 -0.6738 7 6 1.3633 4.1600 -2.4412 8 7 0.5362 3.5601 -3.2709 9 14 1.8414 5.9433 -2.7255 10 1 3.0532 6.0005 -3.5819 11 1 0.7250 6.6537 -3.3993 12 1 2.1262 6.5934 -1.4210 13 6 2.0861 -0.8075 1.2026 14 6 2.0295 -2.2643 0.6967 15 7 2.0153 -2.2157 -0.7727 16 6 1.9494 -3.2830 -1.5932 17 8 1.9446 -3.1238 -2.7976 18 6 1.8827 -4.6520 -1.0257 19 6 1.8141 -5.7499 -1.8943 20 6 1.7528 -7.0152 -1.3828 21 6 1.7616 -7.1682 0.0148 22 6 1.7015 -8.4407 0.6131 23 6 1.7148 -8.5123 1.9770 24 6 1.7809 -7.3424 2.7327 25 7 1.8421 -6.1599 2.1719 26 6 1.8331 -6.0174 0.8409 27 7 1.8893 -4.8067 0.2841 28 6 2.0917 -0.8069 -1.2000 29 1 -0.3633 0.4524 0.9227 30 1 -0.3633 0.5729 -0.8532 31 1 -0.3633 -1.0253 -0.0695 32 1 1.7823 1.9303 0.9226 33 1 3.1630 1.4033 -0.0696 34 1 0.9213 1.7178 -1.7587 35 1 0.1753 4.0440 -4.0302 36 1 1.4520 -0.6789 2.0798 37 1 3.1127 -0.5159 1.4246 38 1 1.1229 -2.7479 1.0603 39 1 2.9074 -2.8108 1.0411 40 1 1.8094 -5.5962 -2.9633 41 1 1.6998 -7.8749 -2.0344 42 1 1.6473 -9.3354 0.0107 43 1 1.6696 -9.4726 2.4690 44 1 1.7865 -7.4132 3.8103 45 1 3.1261 -0.5261 -1.3980 46 1 1.4775 -0.6453 -2.0859 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324735193.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:13 Heat of formation + Delta-G solvation = 40.341206 kcal Electronic energy + Delta-G solvation = -28886.561489 eV Core-core repulsion = 24969.117133 eV Total energy + Delta-G solvation = -3917.444356 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.40093 -41.28777 -39.56393 -38.43542 -36.56144 -35.22734 -34.32495 -32.45490 -32.07111 -31.86045 -30.37950 -28.30920 -27.57739 -26.33255 -25.32522 -24.79645 -23.73247 -23.23698 -21.47499 -20.24986 -19.68737 -19.33653 -18.61640 -18.09086 -17.37650 -17.28770 -16.68156 -16.60757 -16.07527 -15.79631 -15.62561 -15.51472 -15.24975 -15.11606 -14.76110 -14.64049 -14.47120 -13.99109 -13.92996 -13.63364 -13.43441 -13.23743 -13.05859 -12.94781 -12.86366 -12.80118 -12.71043 -12.15192 -12.14977 -12.08890 -11.90582 -11.71878 -11.51384 -11.36553 -11.22885 -10.92893 -10.12173 -10.06079 -9.90951 -9.73716 -8.97205 -7.92700 -5.21276 -1.02075 -0.55775 0.82711 1.23706 1.47167 1.49516 1.57768 1.69252 2.06932 2.48387 2.57337 3.04439 3.20913 3.36994 3.40331 3.51798 3.58559 3.62046 3.74160 3.82911 3.93839 4.03214 4.12776 4.23818 4.29104 4.35703 4.36414 4.47332 4.62510 4.65763 4.72038 4.77166 4.80519 4.93804 4.94363 4.96080 5.05549 5.08395 5.12851 5.14493 5.19327 5.25687 5.28891 5.44731 5.51910 5.61135 6.15213 6.28870 6.33183 6.80995 7.06559 7.35383 8.11686 8.34510 9.31082 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026121 B = 0.002291 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.695972 B =12221.367619 C =12987.994660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.069 4.069 3 C 0.169 3.831 4 N -0.744 5.744 5 C -0.240 4.240 6 H 0.079 0.921 7 C -0.080 4.080 8 N -0.972 5.972 9 Si 0.974 3.026 10 H -0.289 1.289 11 H -0.297 1.297 12 H -0.267 1.267 13 C -0.114 4.114 14 C 0.131 3.869 15 N -0.592 5.592 16 C 0.567 3.433 17 O -0.568 6.568 18 C 0.128 3.872 19 C -0.147 4.147 20 C -0.024 4.024 21 C -0.153 4.153 22 C -0.042 4.042 23 C -0.161 4.161 24 C 0.161 3.839 25 N -0.504 5.504 26 C 0.269 3.731 27 N -0.451 5.451 28 C 0.124 3.876 29 H 0.072 0.928 30 H 0.036 0.964 31 H 0.052 0.948 32 H 0.036 0.964 33 H 0.025 0.975 34 H 0.374 0.626 35 H 0.250 0.750 36 H 0.106 0.894 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.156 0.844 41 H 0.196 0.804 42 H 0.185 0.815 43 H 0.188 0.812 44 H 0.199 0.801 45 H 0.065 0.935 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.624 -32.964 14.256 36.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.070 4.070 3 C 0.042 3.958 4 N -0.387 5.387 5 C -0.372 4.372 6 H 0.097 0.903 7 C -0.272 4.272 8 N -0.623 5.623 9 Si 0.804 3.196 10 H -0.217 1.217 11 H -0.224 1.224 12 H -0.191 1.191 13 C -0.152 4.152 14 C 0.010 3.990 15 N -0.323 5.323 16 C 0.355 3.645 17 O -0.447 6.447 18 C -0.027 4.027 19 C -0.168 4.168 20 C -0.050 4.050 21 C -0.159 4.159 22 C -0.068 4.068 23 C -0.180 4.180 24 C -0.016 4.016 25 N -0.214 5.214 26 C 0.031 3.969 27 N -0.165 5.165 28 C 0.001 3.999 29 H 0.091 0.909 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.043 0.957 34 H 0.207 0.793 35 H 0.058 0.942 36 H 0.124 0.876 37 H 0.108 0.892 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.174 0.826 41 H 0.213 0.787 42 H 0.203 0.797 43 H 0.206 0.794 44 H 0.216 0.784 45 H 0.083 0.917 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.810 -31.205 14.688 34.603 hybrid contribution -0.179 0.072 -2.002 2.011 sum 2.631 -31.134 12.686 33.722 Atomic orbital electron populations 1.21565 0.93379 1.00712 1.02141 1.21853 0.96294 0.94213 0.94677 1.20734 0.95602 0.89136 0.90279 1.42639 1.55877 1.10491 1.29693 1.19657 1.21300 0.89053 1.07213 0.90340 1.25595 1.00717 1.02626 0.98216 1.69837 1.37242 1.37843 1.17354 0.85120 0.76593 0.80011 0.77918 1.21662 1.22381 1.19136 1.22832 1.03141 0.92070 0.97166 1.22102 1.02966 0.96964 0.77004 1.48480 1.69172 1.05655 1.08988 1.18072 0.77288 0.83939 0.85236 1.90778 1.52857 1.85959 1.15131 1.21072 0.98405 0.93760 0.89439 1.21914 1.00357 0.92209 1.02321 1.21926 0.91533 0.98048 0.93499 1.20062 1.03330 0.96547 0.95913 1.22012 0.92594 0.95935 0.96288 1.22561 0.99210 1.01735 0.94493 1.23898 0.88599 0.86258 1.02846 1.67633 1.14767 1.29381 1.09649 1.19572 0.98326 0.88163 0.90843 1.67522 1.11540 1.25836 1.11560 1.22262 1.00510 0.79230 0.97860 0.90941 0.94459 0.92871 0.94649 0.95685 0.79323 0.94160 0.87585 0.89213 0.90638 0.90506 0.82614 0.78719 0.79729 0.79427 0.78403 0.91708 0.93054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.17 8.42 71.98 0.61 -3.56 16 2 C -0.07 -2.35 0.63 -50.71 -0.03 -2.38 16 3 C 0.17 6.84 5.25 86.38 0.45 7.29 16 4 N -0.74 -38.85 5.18 -343.45 -1.78 -40.62 16 5 C -0.24 -13.74 9.99 84.04 0.84 -12.90 16 6 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 7 C -0.08 -4.73 5.50 84.86 0.47 -4.26 16 8 N -0.97 -61.92 13.06 21.65 0.28 -61.63 16 9 Si 0.97 47.63 29.55 68.60 2.03 49.66 16 10 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 11 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 12 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 13 C -0.11 -2.94 5.91 31.78 0.19 -2.75 16 14 C 0.13 3.66 5.07 86.73 0.44 4.10 16 15 N -0.59 -20.11 3.31 -814.20 -2.70 -22.81 16 16 C 0.57 20.09 7.84 86.93 0.68 20.77 16 17 O -0.57 -23.67 16.53 -3.68 -0.06 -23.73 16 18 C 0.13 3.68 6.73 42.30 0.28 3.96 16 19 C -0.15 -3.17 9.54 22.36 0.21 -2.95 16 20 C -0.02 -0.32 9.89 22.47 0.22 -0.10 16 21 C -0.15 -2.36 5.75 -21.20 -0.12 -2.48 16 22 C -0.04 -0.27 9.90 22.50 0.22 -0.04 16 23 C -0.16 -0.69 10.04 22.17 0.22 -0.46 16 24 C 0.16 1.61 11.14 85.10 0.95 2.56 16 25 N -0.50 -10.46 10.43 -193.77 -2.02 -12.48 16 26 C 0.27 6.23 7.62 135.11 1.03 7.26 16 27 N -0.45 -12.53 6.85 -182.99 -1.25 -13.78 16 28 C 0.12 4.70 5.62 86.93 0.49 5.19 16 29 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.04 1.54 6.65 -2.39 -0.02 1.52 16 31 H 0.05 1.72 7.91 -2.39 -0.02 1.70 16 32 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.03 1.01 8.07 -2.38 -0.02 0.99 16 34 H 0.37 21.10 6.23 -92.70 -0.58 20.52 16 35 H 0.25 15.45 8.31 -92.71 -0.77 14.68 16 36 H 0.11 2.28 8.05 -2.39 -0.02 2.26 16 37 H 0.09 2.12 8.04 -2.39 -0.02 2.10 16 38 H 0.08 2.13 7.40 -2.39 -0.02 2.11 16 39 H 0.08 2.11 7.53 -2.39 -0.02 2.09 16 40 H 0.16 3.24 7.60 -2.91 -0.02 3.22 16 41 H 0.20 0.71 8.06 -2.91 -0.02 0.68 16 42 H 0.19 -0.36 8.06 -2.91 -0.02 -0.39 16 43 H 0.19 -0.80 8.06 -2.91 -0.02 -0.82 16 44 H 0.20 0.52 8.06 -2.91 -0.02 0.50 16 45 H 0.06 2.54 7.99 -2.39 -0.02 2.52 16 46 H 0.05 2.28 7.95 -2.39 -0.02 2.26 16 Total: -1.00 -83.15 379.15 2.08 -81.06 By element: Atomic # 1 Polarization: 24.67 SS G_CDS: 0.43 Total: 25.10 kcal Atomic # 6 Polarization: 12.08 SS G_CDS: 7.15 Total: 19.23 kcal Atomic # 7 Polarization: -143.87 SS G_CDS: -7.47 Total: -151.33 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.06 Total: -23.73 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 2.03 Total: 49.66 kcal Total: -83.15 2.08 -81.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324735193.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.404 kcal (2) G-P(sol) polarization free energy of solvation -83.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds