Wall clock time and date at job start Tue Mar 31 2020 23:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38647 * 119.96117 * 2 1 4 4 C 1.39217 * 117.94651 * 179.97438 * 3 2 1 5 5 N 1.39778 * 121.11699 * 179.97438 * 4 3 2 6 6 C 1.34771 * 120.00286 * 350.01706 * 5 4 3 7 7 O 1.21293 * 119.99980 * 355.02818 * 6 5 4 8 8 C 1.50697 * 120.00432 * 175.02743 * 6 5 4 9 9 H 1.09008 * 109.46812 * 299.99810 * 8 6 5 10 10 C 1.50698 * 109.46970 * 59.99402 * 8 6 5 11 11 H 1.07998 * 119.99871 * 34.44795 * 10 8 6 12 12 C 1.37883 * 120.00027 * 214.44450 * 10 8 6 13 13 N 1.31511 * 120.00205 * 5.43817 * 12 10 8 14 14 Si 1.86796 * 119.99786 * 185.43966 * 12 10 8 15 15 H 1.48506 * 109.47544 * 90.00121 * 14 12 10 16 16 H 1.48501 * 109.47218 * 209.99923 * 14 12 10 17 17 H 1.48501 * 109.47392 * 330.00002 * 14 12 10 18 18 C 1.50695 * 109.47350 * 179.97438 * 8 6 5 19 19 C 1.38229 * 120.00341 * 293.65458 * 18 8 6 20 20 C 1.38234 * 120.00554 * 179.78777 * 19 18 8 21 21 C 1.38237 * 119.99584 * 0.44861 * 20 19 18 22 22 C 1.38241 * 120.00026 * 359.80481 * 21 20 19 23 23 C 1.38231 * 119.99666 * 359.97438 * 22 21 20 24 24 C 1.40169 * 117.76121 * 0.02562 * 4 3 2 25 25 N 1.39232 * 120.20299 * 179.97438 * 24 4 3 26 26 C 1.46907 * 110.99771 * 167.58361 * 25 24 4 27 27 C 1.46901 * 111.00111 * 291.53456 * 25 24 4 28 28 N 1.32277 * 119.58532 * 0.24661 * 24 4 3 29 29 N 1.28308 * 122.16313 * 359.47413 * 28 24 4 30 30 H 1.09003 * 109.47481 * 90.00027 * 1 2 3 31 31 H 1.09003 * 109.47081 * 209.99940 * 1 2 3 32 32 H 1.09005 * 109.47033 * 330.00006 * 1 2 3 33 33 H 1.08000 * 121.03024 * 359.96075 * 3 2 1 34 34 H 0.97005 * 119.99586 * 170.01324 * 5 4 3 35 35 H 0.96992 * 120.00464 * 179.97438 * 13 12 10 36 36 H 1.08004 * 119.99729 * 0.02562 * 19 18 8 37 37 H 1.07997 * 120.00279 * 180.27955 * 20 19 18 38 38 H 1.07999 * 120.00178 * 179.83378 * 21 20 19 39 39 H 1.08003 * 119.99949 * 180.02562 * 22 21 20 40 40 H 1.08007 * 119.99759 * 179.97438 * 23 22 21 41 41 H 1.09000 * 109.47256 * 179.97438 * 26 25 24 42 42 H 1.08998 * 109.47174 * 59.99648 * 26 25 24 43 43 H 1.09000 * 109.47049 * 299.99751 * 26 25 24 44 44 H 1.09006 * 109.46917 * 291.62630 * 27 25 24 45 45 H 1.09002 * 109.46588 * 51.62157 * 27 25 24 46 46 H 1.08993 * 109.47364 * 171.62446 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1994 1.2012 0.0000 4 6 3.5907 1.1522 0.0005 5 7 4.3547 2.3228 0.0000 6 6 3.7605 3.5152 -0.2033 7 8 2.5796 3.5658 -0.4752 8 6 4.5633 4.7858 -0.0929 9 1 4.9792 4.8666 0.9115 10 6 5.6841 4.7609 -1.1000 11 1 5.5371 4.2881 -2.0598 12 6 6.8971 5.3418 -0.7961 13 7 7.1125 5.8225 0.4089 14 14 8.2345 5.4460 -2.0960 15 1 8.0951 6.7184 -2.8489 16 1 9.5663 5.4019 -1.4407 17 1 8.1053 4.3004 -3.0321 18 6 3.6708 5.9692 -0.3643 19 6 3.1330 6.1548 -1.6241 20 6 2.3106 7.2379 -1.8720 21 6 2.0336 8.1407 -0.8624 22 6 2.5757 7.9580 0.3961 23 6 3.3943 6.8723 0.6450 24 6 4.1996 -0.1103 0.0005 25 7 5.5877 -0.2185 0.0005 26 6 6.0084 -1.5948 0.2954 27 6 6.1517 0.2425 -1.2752 28 7 3.4472 -1.1982 -0.0050 29 7 2.1653 -1.1422 -0.0004 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.6757 2.1457 -0.0006 34 1 5.3126 2.2768 0.1461 35 1 7.9659 6.2308 0.6228 36 1 3.3521 5.4513 -2.4138 37 1 1.8868 7.3804 -2.8551 38 1 1.3934 8.9884 -1.0567 39 1 2.3590 8.6631 1.1849 40 1 3.8182 6.7298 1.6282 41 1 7.0970 -1.6513 0.2887 42 1 5.6054 -2.2679 -0.4612 43 1 5.6352 -1.8864 1.2771 44 1 5.8735 -0.4523 -2.0677 45 1 5.7620 1.2336 -1.5076 46 1 7.2379 0.2883 -1.1969 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361903639.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:42 Heat of formation + Delta-G solvation = 63.321664 kcal Electronic energy + Delta-G solvation = -29896.552849 eV Core-core repulsion = 25980.105000 eV Total energy + Delta-G solvation = -3916.447849 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.29843 -39.51505 -38.05327 -37.51642 -34.80709 -33.94653 -33.09145 -31.40925 -30.56329 -30.08381 -28.12206 -27.57094 -27.43076 -25.14872 -24.35763 -23.15031 -21.89618 -21.71197 -20.92144 -19.77064 -18.07215 -17.04681 -17.01620 -16.66866 -15.96431 -15.72790 -15.48724 -14.73382 -14.53230 -14.35456 -14.32028 -14.19376 -13.97734 -13.68704 -13.53101 -13.10868 -12.74572 -12.60538 -12.48025 -12.36809 -12.26947 -12.06970 -11.84170 -11.82151 -11.70636 -11.24966 -11.17621 -11.03508 -10.78175 -10.56146 -10.43889 -10.28296 -10.07019 -9.64353 -9.61081 -8.98352 -8.89117 -8.50771 -8.09052 -7.92880 -7.79404 -6.45508 -4.53784 1.10533 1.15090 2.21668 2.24489 3.09568 3.13313 3.18118 3.24833 3.40693 3.49345 3.87026 4.13297 4.33339 4.62720 4.70314 4.91256 4.95583 5.07256 5.24543 5.32346 5.46320 5.52821 5.60391 5.62622 5.63335 5.64012 5.68866 5.77645 5.89420 5.91050 5.95254 6.00803 6.05144 6.12339 6.33631 6.40142 6.44395 6.68067 6.71858 6.78159 6.81232 6.98618 7.10769 7.23417 7.28452 7.43286 7.56277 7.75607 7.78604 7.92025 8.47812 8.69791 9.01374 9.13677 10.62755 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009555 B = 0.004696 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2929.602083 B = 5961.103902 C = 8270.491643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.073 3.927 3 C -0.163 4.163 4 C 0.174 3.826 5 N -0.645 5.645 6 C 0.529 3.471 7 O -0.534 6.534 8 C 0.053 3.947 9 H 0.100 0.900 10 C -0.526 4.526 11 H 0.064 0.936 12 C 0.080 3.920 13 N -0.873 5.873 14 Si 0.899 3.101 15 H -0.276 1.276 16 H -0.283 1.283 17 H -0.270 1.270 18 C -0.017 4.017 19 C -0.085 4.085 20 C -0.133 4.133 21 C -0.145 4.145 22 C -0.131 4.131 23 C -0.118 4.118 24 C 0.203 3.797 25 N -0.478 5.478 26 C 0.035 3.965 27 C 0.017 3.983 28 N -0.261 5.261 29 N -0.267 5.267 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.192 0.808 34 H 0.429 0.571 35 H 0.270 0.730 36 H 0.111 0.889 37 H 0.107 0.893 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.113 0.887 41 H 0.073 0.927 42 H 0.047 0.953 43 H 0.073 0.927 44 H 0.038 0.962 45 H 0.083 0.917 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.572 -5.831 -0.262 7.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.073 4.073 3 C -0.194 4.194 4 C 0.062 3.938 5 N -0.287 5.287 6 C 0.321 3.679 7 O -0.412 6.412 8 C 0.032 3.968 9 H 0.118 0.882 10 C -0.564 4.564 11 H 0.082 0.918 12 C -0.127 4.127 13 N -0.508 5.508 14 Si 0.725 3.275 15 H -0.202 1.202 16 H -0.208 1.208 17 H -0.195 1.195 18 C -0.018 4.018 19 C -0.103 4.103 20 C -0.151 4.151 21 C -0.163 4.163 22 C -0.149 4.149 23 C -0.136 4.136 24 C -0.039 4.039 25 N -0.198 5.198 26 C -0.113 4.113 27 C -0.130 4.130 28 N -0.105 5.105 29 N -0.111 5.111 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.209 0.791 34 H 0.269 0.731 35 H 0.080 0.920 36 H 0.129 0.871 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.126 0.874 40 H 0.131 0.869 41 H 0.091 0.909 42 H 0.065 0.935 43 H 0.092 0.908 44 H 0.057 0.943 45 H 0.102 0.898 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.011 -6.933 0.048 8.554 hybrid contribution 1.274 1.302 -1.133 2.145 sum -3.737 -5.630 -1.085 6.844 Atomic orbital electron populations 1.20577 0.87774 1.03522 1.03243 1.22693 0.98774 0.89799 0.96020 1.23221 0.92427 1.02435 1.01363 1.18732 0.91983 0.86665 0.96413 1.43827 1.12953 1.03713 1.68214 1.22255 0.87536 0.85542 0.72566 1.90376 1.16938 1.86996 1.46848 1.18162 0.91926 0.84031 1.02658 0.88238 1.20642 0.95045 1.39976 1.00691 0.91792 1.24947 0.98320 0.93990 0.95400 1.69850 1.24996 1.37149 1.18802 0.86470 0.80523 0.79078 0.81379 1.20183 1.20827 1.19505 1.19973 0.92792 0.96417 0.92658 1.20823 0.95957 0.96667 0.96848 1.20969 0.99920 0.95858 0.98380 1.20840 1.01963 0.99626 0.93899 1.20923 0.99126 0.98184 0.96634 1.21003 0.98307 0.95271 0.98992 1.21216 0.91613 0.89917 1.01187 1.59404 1.03173 1.25189 1.32081 1.22277 1.00442 0.86233 1.02320 1.22658 1.01391 1.01548 0.87398 1.72949 1.00056 1.25248 1.12273 1.72527 1.00390 1.24963 1.13256 0.90264 0.90429 0.90367 0.79118 0.73079 0.91972 0.87071 0.87467 0.87570 0.87397 0.86864 0.90857 0.93461 0.90827 0.94316 0.89834 0.89385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.07 10.19 36.00 0.37 -0.70 16 2 C 0.07 1.15 6.86 -82.44 -0.57 0.58 16 3 C -0.16 -2.80 8.73 -39.07 -0.34 -3.14 16 4 C 0.17 3.07 6.35 -83.15 -0.53 2.55 16 5 N -0.64 -11.66 4.35 -9.50 -0.04 -11.71 16 6 C 0.53 10.66 6.95 -10.99 -0.08 10.58 16 7 O -0.53 -11.24 12.09 5.55 0.07 -11.17 16 8 C 0.05 1.15 2.45 -94.08 -0.23 0.92 16 9 H 0.10 2.31 7.00 -51.92 -0.36 1.95 16 10 C -0.53 -12.03 7.39 -34.44 -0.25 -12.29 16 11 H 0.06 1.47 7.82 -52.49 -0.41 1.06 16 12 C 0.08 1.87 5.45 -17.82 -0.10 1.78 16 13 N -0.87 -21.51 12.77 55.43 0.71 -20.80 16 14 Si 0.90 18.69 29.54 -169.99 -5.02 13.67 16 15 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 16 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 17 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 18 C -0.02 -0.37 4.30 -104.63 -0.45 -0.82 16 19 C -0.08 -1.74 8.32 -39.59 -0.33 -2.07 16 20 C -0.13 -2.42 10.05 -39.58 -0.40 -2.82 16 21 C -0.15 -2.49 10.05 -39.58 -0.40 -2.89 16 22 C -0.13 -2.33 10.05 -39.58 -0.40 -2.72 16 23 C -0.12 -2.36 9.67 -39.58 -0.38 -2.75 16 24 C 0.20 3.40 6.24 -154.51 -0.96 2.44 16 25 N -0.48 -6.97 4.56 -188.58 -0.86 -7.83 16 26 C 0.03 0.42 8.83 60.07 0.53 0.95 16 27 C 0.02 0.22 9.09 60.07 0.55 0.77 16 28 N -0.26 -4.54 9.96 31.38 0.31 -4.22 16 29 N -0.27 -4.59 11.40 33.59 0.38 -4.21 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.08 0.81 8.09 -51.93 -0.42 0.39 16 33 H 0.19 3.43 5.05 -53.28 -0.27 3.17 16 34 H 0.43 7.58 6.93 -40.82 -0.28 7.29 16 35 H 0.27 6.42 8.31 -40.82 -0.34 6.08 16 36 H 0.11 2.31 7.88 -52.48 -0.41 1.89 16 37 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 38 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 39 H 0.11 1.62 8.06 -52.48 -0.42 1.19 16 40 H 0.11 2.20 7.96 -52.48 -0.42 1.78 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.05 0.59 7.76 -51.93 -0.40 0.19 16 43 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.04 0.49 8.13 -51.93 -0.42 0.07 16 45 H 0.08 1.25 6.07 -51.93 -0.32 0.94 16 46 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 382.84 15.07 5.77 5.77 Total: -1.00 -26.83 382.84 -8.89 -35.71 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: -6.23 Total: 14.41 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: -3.97 Total: -9.63 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: 0.50 Total: -48.77 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.07 Total: -11.17 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.02 Total: 13.67 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -26.83 -8.89 -35.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361903639.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.036 kcal (2) G-P(sol) polarization free energy of solvation -26.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds