Wall clock time and date at job start Tue Mar 31 2020 23:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38647 * 119.96117 * 2 1 4 4 C 1.39217 * 117.94651 * 179.97438 * 3 2 1 5 5 N 1.39778 * 121.11699 * 179.97438 * 4 3 2 6 6 C 1.34771 * 120.00286 * 350.01706 * 5 4 3 7 7 O 1.21293 * 119.99980 * 355.02818 * 6 5 4 8 8 C 1.50697 * 120.00432 * 175.02743 * 6 5 4 9 9 H 1.09008 * 109.46812 * 299.99810 * 8 6 5 10 10 C 1.50698 * 109.46970 * 59.99402 * 8 6 5 11 11 H 1.07998 * 119.99871 * 34.44795 * 10 8 6 12 12 C 1.37883 * 120.00027 * 214.44450 * 10 8 6 13 13 N 1.31511 * 120.00205 * 5.43817 * 12 10 8 14 14 Si 1.86796 * 119.99786 * 185.43966 * 12 10 8 15 15 H 1.48506 * 109.47544 * 90.00121 * 14 12 10 16 16 H 1.48501 * 109.47218 * 209.99923 * 14 12 10 17 17 H 1.48501 * 109.47392 * 330.00002 * 14 12 10 18 18 C 1.50695 * 109.47350 * 179.97438 * 8 6 5 19 19 C 1.38229 * 120.00341 * 293.65458 * 18 8 6 20 20 C 1.38234 * 120.00554 * 179.78777 * 19 18 8 21 21 C 1.38237 * 119.99584 * 0.44861 * 20 19 18 22 22 C 1.38241 * 120.00026 * 359.80481 * 21 20 19 23 23 C 1.38231 * 119.99666 * 359.97438 * 22 21 20 24 24 C 1.40169 * 117.76121 * 0.02562 * 4 3 2 25 25 N 1.39232 * 120.20299 * 179.97438 * 24 4 3 26 26 C 1.46907 * 110.99771 * 167.58361 * 25 24 4 27 27 C 1.46901 * 111.00111 * 291.53456 * 25 24 4 28 28 N 1.32277 * 119.58532 * 0.24661 * 24 4 3 29 29 N 1.28308 * 122.16313 * 359.47413 * 28 24 4 30 30 H 1.09003 * 109.47481 * 90.00027 * 1 2 3 31 31 H 1.09003 * 109.47081 * 209.99940 * 1 2 3 32 32 H 1.09005 * 109.47033 * 330.00006 * 1 2 3 33 33 H 1.08000 * 121.03024 * 359.96075 * 3 2 1 34 34 H 0.97005 * 119.99586 * 170.01324 * 5 4 3 35 35 H 0.96992 * 120.00464 * 179.97438 * 13 12 10 36 36 H 1.08004 * 119.99729 * 0.02562 * 19 18 8 37 37 H 1.07997 * 120.00279 * 180.27955 * 20 19 18 38 38 H 1.07999 * 120.00178 * 179.83378 * 21 20 19 39 39 H 1.08003 * 119.99949 * 180.02562 * 22 21 20 40 40 H 1.08007 * 119.99759 * 179.97438 * 23 22 21 41 41 H 1.09000 * 109.47256 * 179.97438 * 26 25 24 42 42 H 1.08998 * 109.47174 * 59.99648 * 26 25 24 43 43 H 1.09000 * 109.47049 * 299.99751 * 26 25 24 44 44 H 1.09006 * 109.46917 * 291.62630 * 27 25 24 45 45 H 1.09002 * 109.46588 * 51.62157 * 27 25 24 46 46 H 1.08993 * 109.47364 * 171.62446 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1994 1.2012 0.0000 4 6 3.5907 1.1522 0.0005 5 7 4.3547 2.3228 0.0000 6 6 3.7605 3.5152 -0.2033 7 8 2.5796 3.5658 -0.4752 8 6 4.5633 4.7858 -0.0929 9 1 4.9792 4.8666 0.9115 10 6 5.6841 4.7609 -1.1000 11 1 5.5371 4.2881 -2.0598 12 6 6.8971 5.3418 -0.7961 13 7 7.1125 5.8225 0.4089 14 14 8.2345 5.4460 -2.0960 15 1 8.0951 6.7184 -2.8489 16 1 9.5663 5.4019 -1.4407 17 1 8.1053 4.3004 -3.0321 18 6 3.6708 5.9692 -0.3643 19 6 3.1330 6.1548 -1.6241 20 6 2.3106 7.2379 -1.8720 21 6 2.0336 8.1407 -0.8624 22 6 2.5757 7.9580 0.3961 23 6 3.3943 6.8723 0.6450 24 6 4.1996 -0.1103 0.0005 25 7 5.5877 -0.2185 0.0005 26 6 6.0084 -1.5948 0.2954 27 6 6.1517 0.2425 -1.2752 28 7 3.4472 -1.1982 -0.0050 29 7 2.1653 -1.1422 -0.0004 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.6757 2.1457 -0.0006 34 1 5.3126 2.2768 0.1461 35 1 7.9659 6.2308 0.6228 36 1 3.3521 5.4513 -2.4138 37 1 1.8868 7.3804 -2.8551 38 1 1.3934 8.9884 -1.0567 39 1 2.3590 8.6631 1.1849 40 1 3.8182 6.7298 1.6282 41 1 7.0970 -1.6513 0.2887 42 1 5.6054 -2.2679 -0.4612 43 1 5.6352 -1.8864 1.2771 44 1 5.8735 -0.4523 -2.0677 45 1 5.7620 1.2336 -1.5076 46 1 7.2379 0.2883 -1.1969 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361903639.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:41 Heat of formation + Delta-G solvation = 49.666564 kcal Electronic energy + Delta-G solvation = -29897.144979 eV Core-core repulsion = 25980.105000 eV Total energy + Delta-G solvation = -3917.039979 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.64591 -41.03103 -39.52049 -38.70096 -36.26740 -35.64960 -34.30057 -33.05453 -31.94274 -31.55021 -29.35839 -28.90121 -28.62988 -26.41037 -26.01567 -24.49201 -23.27017 -23.07309 -22.35526 -21.30016 -19.50798 -18.70713 -18.24767 -18.20004 -17.39015 -17.14088 -16.83838 -16.33062 -15.99568 -15.75010 -15.59882 -15.48177 -15.30927 -15.00876 -14.93477 -14.55986 -14.11134 -14.01130 -13.77328 -13.50301 -13.40492 -13.33879 -13.21751 -13.09867 -12.89291 -12.81109 -12.75493 -12.48951 -12.20711 -12.05924 -11.97750 -11.72928 -11.43844 -11.31918 -10.93903 -10.70822 -10.39570 -9.92722 -9.56921 -9.30779 -9.23212 -8.25487 -6.37612 -0.25689 -0.16000 0.73538 0.76502 1.42727 1.45819 1.53376 1.65221 1.93865 2.28965 2.39694 2.56639 3.03752 3.10338 3.23007 3.42500 3.70837 3.82745 4.12488 4.21144 4.25771 4.28363 4.29885 4.33593 4.43765 4.47132 4.53772 4.56938 4.64637 4.75246 4.77922 4.84197 4.86783 4.93692 4.97422 5.05553 5.09205 5.23187 5.33097 5.39252 5.42807 5.60747 5.64894 5.77740 5.79764 5.85670 5.88224 6.17249 6.27745 6.41097 6.68479 7.10088 7.31209 7.69693 8.82593 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009555 B = 0.004696 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2929.602083 B = 5961.103902 C = 8270.491643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.076 3.924 3 C -0.170 4.170 4 C 0.156 3.844 5 N -0.637 5.637 6 C 0.531 3.469 7 O -0.546 6.546 8 C 0.057 3.943 9 H 0.077 0.923 10 C -0.523 4.523 11 H 0.058 0.942 12 C 0.043 3.957 13 N -0.901 5.901 14 Si 0.950 3.050 15 H -0.284 1.284 16 H -0.280 1.280 17 H -0.261 1.261 18 C -0.043 4.043 19 C -0.107 4.107 20 C -0.134 4.134 21 C -0.140 4.140 22 C -0.129 4.129 23 C -0.140 4.140 24 C 0.206 3.794 25 N -0.484 5.484 26 C 0.036 3.964 27 C 0.019 3.981 28 N -0.272 5.272 29 N -0.280 5.280 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.184 0.816 34 H 0.430 0.570 35 H 0.269 0.731 36 H 0.098 0.902 37 H 0.135 0.865 38 H 0.146 0.854 39 H 0.139 0.861 40 H 0.108 0.892 41 H 0.100 0.900 42 H 0.044 0.956 43 H 0.068 0.932 44 H 0.044 0.956 45 H 0.063 0.937 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.307 -5.605 -0.991 7.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.070 4.070 3 C -0.201 4.201 4 C 0.045 3.955 5 N -0.279 5.279 6 C 0.323 3.677 7 O -0.424 6.424 8 C 0.036 3.964 9 H 0.095 0.905 10 C -0.560 4.560 11 H 0.076 0.924 12 C -0.161 4.161 13 N -0.538 5.538 14 Si 0.775 3.225 15 H -0.210 1.210 16 H -0.206 1.206 17 H -0.185 1.185 18 C -0.044 4.044 19 C -0.125 4.125 20 C -0.152 4.152 21 C -0.158 4.158 22 C -0.147 4.147 23 C -0.158 4.158 24 C -0.037 4.037 25 N -0.205 5.205 26 C -0.111 4.111 27 C -0.127 4.127 28 N -0.116 5.116 29 N -0.124 5.124 30 H 0.112 0.888 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.201 0.799 34 H 0.270 0.730 35 H 0.079 0.921 36 H 0.117 0.883 37 H 0.153 0.847 38 H 0.163 0.837 39 H 0.157 0.843 40 H 0.126 0.874 41 H 0.119 0.881 42 H 0.063 0.937 43 H 0.086 0.914 44 H 0.063 0.937 45 H 0.082 0.918 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -5.743 -6.748 -0.684 8.888 hybrid contribution 1.420 1.227 -0.887 2.076 sum -4.323 -5.521 -1.571 7.186 Atomic orbital electron populations 1.20722 0.84749 1.04865 1.04575 1.23214 1.00661 0.88650 0.94511 1.23247 0.92431 1.02769 1.01663 1.18917 0.92377 0.86747 0.97497 1.43613 1.12892 1.03483 1.67917 1.21960 0.87281 0.85762 0.72739 1.90364 1.17181 1.87277 1.47564 1.18022 0.92078 0.85317 1.01021 0.90532 1.20717 0.95503 1.39350 1.00479 0.92421 1.25515 0.99939 0.93909 0.96693 1.69946 1.25351 1.38330 1.20126 0.85669 0.78532 0.78745 0.79508 1.21017 1.20564 1.18545 1.20028 0.93930 0.96729 0.93672 1.20856 0.97545 0.97896 0.96241 1.21326 0.98818 0.94904 1.00125 1.21293 1.01388 1.00124 0.92993 1.21300 0.97760 0.97570 0.98040 1.21144 0.99628 0.96382 0.98676 1.21356 0.92640 0.89276 1.00453 1.59468 1.01891 1.26581 1.32549 1.22351 1.02088 0.84778 1.01834 1.22677 1.02554 1.00462 0.87030 1.72921 1.00375 1.25472 1.12825 1.72501 1.00518 1.25651 1.13703 0.88757 0.89011 0.89084 0.79932 0.73014 0.92129 0.88336 0.84679 0.83661 0.84342 0.87406 0.88142 0.93696 0.91359 0.93708 0.91849 0.87118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.95 10.19 71.24 0.73 -1.22 16 2 C 0.08 2.34 6.86 42.66 0.29 2.63 16 3 C -0.17 -5.88 8.73 22.60 0.20 -5.68 16 4 C 0.16 5.60 6.35 38.58 0.25 5.85 16 5 N -0.64 -23.84 4.35 -302.37 -1.31 -25.15 16 6 C 0.53 22.21 6.95 87.66 0.61 22.82 16 7 O -0.55 -23.63 12.09 -3.07 -0.04 -23.67 16 8 C 0.06 2.56 2.45 -13.04 -0.03 2.53 16 9 H 0.08 3.76 7.00 -2.38 -0.02 3.75 16 10 C -0.52 -24.58 7.39 25.60 0.19 -24.39 16 11 H 0.06 2.73 7.82 -2.91 -0.02 2.70 16 12 C 0.04 2.03 5.45 84.66 0.46 2.50 16 13 N -0.90 -45.49 12.77 21.45 0.27 -45.22 16 14 Si 0.95 38.51 29.54 68.60 2.03 40.53 16 15 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 16 H -0.28 -11.17 7.11 99.48 0.71 -10.46 16 17 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 18 C -0.04 -1.87 4.30 -19.87 -0.09 -1.95 16 19 C -0.11 -4.44 8.32 22.27 0.19 -4.25 16 20 C -0.13 -4.62 10.05 22.27 0.22 -4.40 16 21 C -0.14 -4.39 10.05 22.27 0.22 -4.17 16 22 C -0.13 -4.35 10.05 22.27 0.22 -4.13 16 23 C -0.14 -5.69 9.67 22.27 0.22 -5.47 16 24 C 0.21 6.89 6.24 133.28 0.83 7.72 16 25 N -0.48 -13.85 4.56 -750.54 -3.42 -17.27 16 26 C 0.04 0.84 8.83 127.69 1.13 1.97 16 27 C 0.02 0.49 9.09 127.69 1.16 1.66 16 28 N -0.27 -9.37 9.96 -54.65 -0.54 -9.91 16 29 N -0.28 -9.46 11.40 -47.65 -0.54 -10.01 16 30 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.09 1.72 8.09 -2.38 -0.02 1.70 16 33 H 0.18 6.69 5.05 -15.41 -0.08 6.61 16 34 H 0.43 15.74 6.93 -92.70 -0.64 15.10 16 35 H 0.27 13.05 8.31 -92.71 -0.77 12.28 16 36 H 0.10 4.21 7.88 -2.91 -0.02 4.18 16 37 H 0.14 3.81 8.06 -2.91 -0.02 3.79 16 38 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 39 H 0.14 3.75 8.06 -2.91 -0.02 3.72 16 40 H 0.11 4.35 7.96 -2.91 -0.02 4.32 16 41 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.04 1.07 7.76 -2.39 -0.02 1.05 16 43 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.04 1.10 8.13 -2.38 -0.02 1.08 16 45 H 0.06 1.91 6.07 -2.39 -0.01 1.90 16 46 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -58.44 382.84 3.54 -54.90 By element: Atomic # 1 Polarization: 43.47 SS G_CDS: 0.31 Total: 43.78 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: 6.80 Total: -7.99 kcal Atomic # 7 Polarization: -102.01 SS G_CDS: -5.55 Total: -107.56 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -0.04 Total: -23.67 kcal Atomic # 14 Polarization: 38.51 SS G_CDS: 2.03 Total: 40.53 kcal Total: -58.44 3.54 -54.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361903639.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.566 kcal (2) G-P(sol) polarization free energy of solvation -58.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds