Wall clock time and date at job start Tue Mar 31 2020 23:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38656 * 119.95820 * 2 1 4 4 C 1.39207 * 117.94206 * 180.25852 * 3 2 1 5 5 N 1.39783 * 121.11582 * 179.74273 * 4 3 2 6 6 C 1.34771 * 120.00332 * 341.99597 * 5 4 3 7 7 O 1.21295 * 119.99657 * 4.43284 * 6 5 4 8 8 C 1.50693 * 120.00407 * 184.43166 * 6 5 4 9 9 H 1.09002 * 109.47105 * 60.00650 * 8 6 5 10 10 C 1.50697 * 109.47079 * 300.00332 * 8 6 5 11 11 H 1.07992 * 120.00160 * 331.96622 * 10 8 6 12 12 C 1.37881 * 119.99978 * 151.97084 * 10 8 6 13 13 N 1.31510 * 119.99863 * 5.29642 * 12 10 8 14 14 Si 1.86800 * 120.00116 * 185.29701 * 12 10 8 15 15 H 1.48507 * 109.47013 * 59.99793 * 14 12 10 16 16 H 1.48499 * 109.47145 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47022 * 300.00123 * 14 12 10 18 18 C 1.50706 * 109.47384 * 180.02562 * 8 6 5 19 19 C 1.38237 * 119.99982 * 246.63374 * 18 8 6 20 20 C 1.38233 * 119.99861 * 179.97438 * 19 18 8 21 21 C 1.38232 * 120.00295 * 359.97438 * 20 19 18 22 22 C 1.38241 * 119.99526 * 359.97438 * 21 20 19 23 23 C 1.38227 * 119.99748 * 66.65072 * 18 8 6 24 24 C 1.40177 * 117.76636 * 359.47671 * 4 3 2 25 25 N 1.39225 * 120.20942 * 180.24930 * 24 4 3 26 26 C 1.46890 * 111.00222 * 159.32708 * 25 24 4 27 27 C 1.46905 * 110.99960 * 283.28243 * 25 24 4 28 28 N 1.32275 * 119.58148 * 0.26715 * 24 4 3 29 29 N 1.28310 * 122.16502 * 0.02562 * 28 24 4 30 30 H 1.09003 * 109.47366 * 270.27613 * 1 2 3 31 31 H 1.09004 * 109.47426 * 30.27808 * 1 2 3 32 32 H 1.08997 * 109.47381 * 150.27788 * 1 2 3 33 33 H 1.07991 * 121.02824 * 0.02562 * 3 2 1 34 34 H 0.96998 * 119.99679 * 162.00015 * 5 4 3 35 35 H 0.97009 * 120.00047 * 179.97438 * 13 12 10 36 36 H 1.08000 * 119.99944 * 0.02562 * 19 18 8 37 37 H 1.08001 * 119.99848 * 179.97438 * 20 19 18 38 38 H 1.07989 * 120.00454 * 179.72050 * 21 20 19 39 39 H 1.08006 * 119.99587 * 179.97438 * 22 21 20 40 40 H 1.07999 * 120.00511 * 0.02562 * 23 18 8 41 41 H 1.09009 * 109.47272 * 60.00034 * 26 25 24 42 42 H 1.08997 * 109.47828 * 179.97438 * 26 25 24 43 43 H 1.09006 * 109.47558 * 300.00250 * 26 25 24 44 44 H 1.09006 * 109.46710 * 58.60519 * 27 25 24 45 45 H 1.08999 * 109.47030 * 178.60356 * 27 25 24 46 46 H 1.08994 * 109.47033 * 298.60431 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1994 1.2013 0.0000 4 6 3.5906 1.1523 -0.0055 5 7 4.3546 2.3229 -0.0113 6 6 3.7919 3.4931 -0.3723 7 8 2.6046 3.5459 -0.6146 8 6 4.6378 4.7360 -0.4751 9 1 5.4223 4.5814 -1.2160 10 6 5.2628 5.0304 0.8643 11 1 4.7683 4.7165 1.7716 12 6 6.4659 5.7006 0.9313 13 7 7.0166 6.1743 -0.1650 14 14 7.3136 5.9357 2.5792 15 1 7.6080 4.6090 3.1781 16 1 8.5817 6.6826 2.3814 17 1 6.4245 6.7027 3.4882 18 6 3.7742 5.8984 -0.8923 19 6 3.9620 6.4907 -2.1272 20 6 3.1695 7.5566 -2.5101 21 6 2.1889 8.0300 -1.6585 22 6 2.0005 7.4369 -0.4241 23 6 2.7947 6.3726 -0.0401 24 6 4.1996 -0.1102 0.0006 25 7 5.5876 -0.2184 0.0007 26 6 6.0129 -1.5360 0.4912 27 6 6.1366 0.0482 -1.3356 28 7 3.4472 -1.1981 0.0059 29 7 2.1653 -1.1421 0.0051 30 1 -0.3634 0.0050 1.0277 31 1 -0.3634 0.8875 -0.5182 32 1 -0.3634 -0.8924 -0.5095 33 1 1.6756 2.1457 0.0004 34 1 5.2897 2.2929 0.2446 35 1 7.8629 6.6462 -0.1178 36 1 4.7273 6.1202 -2.7931 37 1 3.3164 8.0196 -3.4747 38 1 1.5728 8.8655 -1.9558 39 1 1.2346 7.8070 0.2415 40 1 2.6484 5.9103 0.9249 41 1 5.6018 -2.3136 -0.1527 42 1 7.1013 -1.5939 0.4805 43 1 5.6512 -1.6788 1.5095 44 1 5.8438 1.0482 -1.6558 45 1 7.2240 -0.0187 -1.3017 46 1 5.7492 -0.6871 -2.0408 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361903643.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:45 Heat of formation + Delta-G solvation = 60.763665 kcal Electronic energy + Delta-G solvation = -29816.423750 eV Core-core repulsion = 25899.864978 eV Total energy + Delta-G solvation = -3916.558772 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.29736 -39.51116 -37.99887 -37.51642 -34.82464 -33.90881 -33.13030 -31.36315 -30.54787 -30.01944 -28.11997 -27.59451 -27.43011 -25.24010 -24.31967 -23.15987 -21.88516 -21.66963 -20.89047 -19.74984 -18.08102 -17.08258 -17.04603 -16.54764 -15.90835 -15.88174 -15.47481 -14.68798 -14.54347 -14.36318 -14.32065 -14.19057 -13.88119 -13.77067 -13.51628 -13.10637 -12.76086 -12.56395 -12.42735 -12.36919 -12.30634 -12.09319 -11.89313 -11.77420 -11.74492 -11.20556 -11.12199 -11.07217 -10.77204 -10.55242 -10.40365 -10.26536 -10.09508 -9.62261 -9.54476 -9.00786 -8.82542 -8.54025 -8.04503 -8.01746 -7.71647 -6.40226 -4.50040 1.05705 1.11375 2.28897 2.31236 3.13077 3.15725 3.20294 3.26610 3.39933 3.46445 3.82511 4.17396 4.30254 4.64954 4.71205 4.91532 4.97132 5.07121 5.19325 5.27627 5.43734 5.47432 5.59917 5.61483 5.64796 5.65516 5.71708 5.78775 5.81754 5.90413 5.92689 6.01301 6.06215 6.11424 6.37563 6.42258 6.48429 6.67426 6.71174 6.75415 6.86001 7.00844 7.08619 7.29412 7.34290 7.47449 7.60812 7.78726 7.81580 7.96917 8.50109 8.68881 8.96593 9.17978 10.67272 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009535 B = 0.004461 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2935.987271 B = 6275.399401 C = 8113.892311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.075 3.925 3 C -0.157 4.157 4 C 0.179 3.821 5 N -0.645 5.645 6 C 0.528 3.472 7 O -0.534 6.534 8 C 0.060 3.940 9 H 0.089 0.911 10 C -0.528 4.528 11 H 0.064 0.936 12 C 0.079 3.921 13 N -0.870 5.870 14 Si 0.899 3.101 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.274 1.274 18 C -0.011 4.011 19 C -0.112 4.112 20 C -0.132 4.132 21 C -0.146 4.146 22 C -0.134 4.134 23 C -0.085 4.085 24 C 0.201 3.799 25 N -0.480 5.480 26 C 0.033 3.967 27 C 0.024 3.976 28 N -0.259 5.259 29 N -0.266 5.266 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.189 0.811 34 H 0.429 0.571 35 H 0.269 0.731 36 H 0.111 0.889 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.111 0.889 41 H 0.048 0.952 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.085 0.915 46 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.909 -7.217 -1.882 8.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.070 4.070 3 C -0.189 4.189 4 C 0.067 3.933 5 N -0.288 5.288 6 C 0.320 3.680 7 O -0.411 6.411 8 C 0.039 3.961 9 H 0.106 0.894 10 C -0.565 4.565 11 H 0.083 0.917 12 C -0.127 4.127 13 N -0.505 5.505 14 Si 0.726 3.274 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.199 1.199 18 C -0.012 4.012 19 C -0.130 4.130 20 C -0.150 4.150 21 C -0.164 4.164 22 C -0.152 4.152 23 C -0.103 4.103 24 C -0.041 4.041 25 N -0.201 5.201 26 C -0.115 4.115 27 C -0.122 4.122 28 N -0.103 5.103 29 N -0.111 5.111 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.206 0.794 34 H 0.269 0.731 35 H 0.079 0.921 36 H 0.129 0.871 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.129 0.871 41 H 0.067 0.933 42 H 0.092 0.908 43 H 0.090 0.910 44 H 0.095 0.905 45 H 0.104 0.896 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.333 -8.257 -1.840 9.504 hybrid contribution 0.988 1.334 0.591 1.762 sum -3.345 -6.922 -1.249 7.789 Atomic orbital electron populations 1.20598 0.87719 1.03697 1.03255 1.22724 0.98826 0.89790 0.95650 1.23115 0.92523 1.02203 1.01040 1.18721 0.91820 0.86734 0.96013 1.43747 1.15616 1.04917 1.64483 1.22216 0.88599 0.84693 0.72442 1.90424 1.16517 1.85146 1.49007 1.18082 0.92578 0.84740 1.00678 0.89364 1.20607 1.05657 1.40324 0.89946 0.91731 1.24938 0.96689 0.94056 0.97055 1.69911 1.18435 1.34567 1.27548 0.86524 0.78851 0.78719 0.83356 1.19695 1.20970 1.19915 1.19904 0.92802 0.96732 0.91789 1.20944 0.98866 0.96898 0.96340 1.20900 0.97046 0.97882 0.99143 1.20815 0.99667 1.00682 0.95254 1.20951 1.00159 0.97593 0.96533 1.20806 0.94847 0.95624 0.99029 1.21200 0.91603 0.89865 1.01456 1.59522 1.03396 1.32190 1.25026 1.22297 1.00486 0.87615 1.01078 1.22539 1.00967 1.02110 0.86634 1.72938 1.00133 1.25609 1.11663 1.72540 1.00407 1.24946 1.13255 0.90209 0.90206 0.90393 0.79444 0.73126 0.92086 0.87075 0.87537 0.87675 0.87552 0.87111 0.93310 0.90812 0.91037 0.90532 0.89593 0.94449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.07 10.19 36.00 0.37 -0.70 16 2 C 0.08 1.17 6.86 -82.44 -0.57 0.60 16 3 C -0.16 -2.67 8.71 -39.07 -0.34 -3.01 16 4 C 0.18 3.10 6.42 -83.14 -0.53 2.57 16 5 N -0.65 -11.48 4.50 -9.50 -0.04 -11.53 16 6 C 0.53 10.59 6.97 -10.99 -0.08 10.51 16 7 O -0.53 -11.24 12.18 5.54 0.07 -11.17 16 8 C 0.06 1.31 2.27 -94.08 -0.21 1.09 16 9 H 0.09 2.01 7.35 -51.93 -0.38 1.63 16 10 C -0.53 -12.29 7.38 -34.44 -0.25 -12.55 16 11 H 0.06 1.52 7.82 -52.49 -0.41 1.11 16 12 C 0.08 1.89 5.45 -17.82 -0.10 1.79 16 13 N -0.87 -21.69 12.96 55.43 0.72 -20.98 16 14 Si 0.90 19.07 29.54 -169.99 -5.02 14.05 16 15 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 16 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 17 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 18 C -0.01 -0.24 4.29 -104.62 -0.45 -0.69 16 19 C -0.11 -2.31 9.67 -39.58 -0.38 -2.69 16 20 C -0.13 -2.42 10.05 -39.59 -0.40 -2.81 16 21 C -0.15 -2.58 10.05 -39.58 -0.40 -2.98 16 22 C -0.13 -2.50 10.05 -39.58 -0.40 -2.90 16 23 C -0.08 -1.79 8.34 -39.59 -0.33 -2.12 16 24 C 0.20 3.28 6.04 -154.51 -0.93 2.35 16 25 N -0.48 -6.73 4.40 -188.59 -0.83 -7.56 16 26 C 0.03 0.39 8.95 60.06 0.54 0.93 16 27 C 0.02 0.30 9.31 60.07 0.56 0.86 16 28 N -0.26 -4.42 10.02 31.38 0.31 -4.10 16 29 N -0.27 -4.51 11.40 33.59 0.38 -4.13 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.08 0.83 8.09 -51.93 -0.42 0.41 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.19 3.35 5.23 -52.60 -0.27 3.07 16 34 H 0.43 7.41 7.84 -40.82 -0.32 7.09 16 35 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 36 H 0.11 2.20 7.96 -52.49 -0.42 1.78 16 37 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 38 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 39 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 40 H 0.11 2.35 7.87 -52.49 -0.41 1.93 16 41 H 0.05 0.59 7.66 -51.92 -0.40 0.19 16 42 H 0.07 0.71 8.13 -51.93 -0.42 0.28 16 43 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.08 1.01 7.17 -51.93 -0.37 0.64 16 45 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 385.62 15.07 5.81 5.81 Total: -1.00 -27.36 385.62 -8.85 -36.21 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: -6.35 Total: 13.15 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -3.90 Total: -9.75 kcal Atomic # 7 Polarization: -48.85 SS G_CDS: 0.54 Total: -48.30 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.07 Total: -11.17 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.02 Total: 14.05 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -27.36 -8.85 -36.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361903643.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.974 kcal (2) G-P(sol) polarization free energy of solvation -27.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds