Wall clock time and date at job start Tue Mar 31 2020 23:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38656 * 119.95820 * 2 1 4 4 C 1.39207 * 117.94206 * 180.25852 * 3 2 1 5 5 N 1.39783 * 121.11582 * 179.74273 * 4 3 2 6 6 C 1.34771 * 120.00332 * 341.99597 * 5 4 3 7 7 O 1.21295 * 119.99657 * 4.43284 * 6 5 4 8 8 C 1.50693 * 120.00407 * 184.43166 * 6 5 4 9 9 H 1.09002 * 109.47105 * 60.00650 * 8 6 5 10 10 C 1.50697 * 109.47079 * 300.00332 * 8 6 5 11 11 H 1.07992 * 120.00160 * 331.96622 * 10 8 6 12 12 C 1.37881 * 119.99978 * 151.97084 * 10 8 6 13 13 N 1.31510 * 119.99863 * 5.29642 * 12 10 8 14 14 Si 1.86800 * 120.00116 * 185.29701 * 12 10 8 15 15 H 1.48507 * 109.47013 * 59.99793 * 14 12 10 16 16 H 1.48499 * 109.47145 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47022 * 300.00123 * 14 12 10 18 18 C 1.50706 * 109.47384 * 180.02562 * 8 6 5 19 19 C 1.38237 * 119.99982 * 246.63374 * 18 8 6 20 20 C 1.38233 * 119.99861 * 179.97438 * 19 18 8 21 21 C 1.38232 * 120.00295 * 359.97438 * 20 19 18 22 22 C 1.38241 * 119.99526 * 359.97438 * 21 20 19 23 23 C 1.38227 * 119.99748 * 66.65072 * 18 8 6 24 24 C 1.40177 * 117.76636 * 359.47671 * 4 3 2 25 25 N 1.39225 * 120.20942 * 180.24930 * 24 4 3 26 26 C 1.46890 * 111.00222 * 159.32708 * 25 24 4 27 27 C 1.46905 * 110.99960 * 283.28243 * 25 24 4 28 28 N 1.32275 * 119.58148 * 0.26715 * 24 4 3 29 29 N 1.28310 * 122.16502 * 0.02562 * 28 24 4 30 30 H 1.09003 * 109.47366 * 270.27613 * 1 2 3 31 31 H 1.09004 * 109.47426 * 30.27808 * 1 2 3 32 32 H 1.08997 * 109.47381 * 150.27788 * 1 2 3 33 33 H 1.07991 * 121.02824 * 0.02562 * 3 2 1 34 34 H 0.96998 * 119.99679 * 162.00015 * 5 4 3 35 35 H 0.97009 * 120.00047 * 179.97438 * 13 12 10 36 36 H 1.08000 * 119.99944 * 0.02562 * 19 18 8 37 37 H 1.08001 * 119.99848 * 179.97438 * 20 19 18 38 38 H 1.07989 * 120.00454 * 179.72050 * 21 20 19 39 39 H 1.08006 * 119.99587 * 179.97438 * 22 21 20 40 40 H 1.07999 * 120.00511 * 0.02562 * 23 18 8 41 41 H 1.09009 * 109.47272 * 60.00034 * 26 25 24 42 42 H 1.08997 * 109.47828 * 179.97438 * 26 25 24 43 43 H 1.09006 * 109.47558 * 300.00250 * 26 25 24 44 44 H 1.09006 * 109.46710 * 58.60519 * 27 25 24 45 45 H 1.08999 * 109.47030 * 178.60356 * 27 25 24 46 46 H 1.08994 * 109.47033 * 298.60431 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1994 1.2013 0.0000 4 6 3.5906 1.1523 -0.0055 5 7 4.3546 2.3229 -0.0113 6 6 3.7919 3.4931 -0.3723 7 8 2.6046 3.5459 -0.6146 8 6 4.6378 4.7360 -0.4751 9 1 5.4223 4.5814 -1.2160 10 6 5.2628 5.0304 0.8643 11 1 4.7683 4.7165 1.7716 12 6 6.4659 5.7006 0.9313 13 7 7.0166 6.1743 -0.1650 14 14 7.3136 5.9357 2.5792 15 1 7.6080 4.6090 3.1781 16 1 8.5817 6.6826 2.3814 17 1 6.4245 6.7027 3.4882 18 6 3.7742 5.8984 -0.8923 19 6 3.9620 6.4907 -2.1272 20 6 3.1695 7.5566 -2.5101 21 6 2.1889 8.0300 -1.6585 22 6 2.0005 7.4369 -0.4241 23 6 2.7947 6.3726 -0.0401 24 6 4.1996 -0.1102 0.0006 25 7 5.5876 -0.2184 0.0007 26 6 6.0129 -1.5360 0.4912 27 6 6.1366 0.0482 -1.3356 28 7 3.4472 -1.1981 0.0059 29 7 2.1653 -1.1421 0.0051 30 1 -0.3634 0.0050 1.0277 31 1 -0.3634 0.8875 -0.5182 32 1 -0.3634 -0.8924 -0.5095 33 1 1.6756 2.1457 0.0004 34 1 5.2897 2.2929 0.2446 35 1 7.8629 6.6462 -0.1178 36 1 4.7273 6.1202 -2.7931 37 1 3.3164 8.0196 -3.4747 38 1 1.5728 8.8655 -1.9558 39 1 1.2346 7.8070 0.2415 40 1 2.6484 5.9103 0.9249 41 1 5.6018 -2.3136 -0.1527 42 1 7.1013 -1.5939 0.4805 43 1 5.6512 -1.6788 1.5095 44 1 5.8438 1.0482 -1.6558 45 1 7.2240 -0.0187 -1.3017 46 1 5.7492 -0.6871 -2.0408 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361903643.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:44 Heat of formation + Delta-G solvation = 46.672419 kcal Electronic energy + Delta-G solvation = -29817.034793 eV Core-core repulsion = 25899.864978 eV Total energy + Delta-G solvation = -3917.169814 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.61955 -41.02741 -39.49015 -38.65593 -36.27466 -35.63185 -34.31696 -33.02634 -31.92195 -31.52092 -29.33083 -28.89961 -28.61199 -26.47478 -25.98815 -24.48724 -23.22735 -23.06969 -22.33341 -21.28310 -19.51014 -18.69831 -18.25666 -18.12204 -17.35752 -17.26422 -16.81662 -16.32833 -15.96096 -15.77267 -15.49992 -15.44247 -15.31625 -15.09054 -14.87901 -14.58564 -14.07649 -13.95205 -13.75393 -13.55079 -13.37557 -13.30856 -13.23115 -13.11819 -12.87910 -12.76412 -12.74786 -12.53998 -12.23036 -12.04472 -11.97048 -11.72728 -11.47704 -11.30824 -10.84159 -10.67038 -10.42131 -9.91864 -9.54030 -9.33085 -9.24673 -8.23224 -6.36848 -0.26929 -0.18348 0.77475 0.79738 1.44205 1.45799 1.51777 1.65033 1.94536 2.30082 2.40564 2.54652 3.05782 3.09858 3.25064 3.42157 3.70907 3.85217 4.13721 4.22734 4.27248 4.29185 4.31171 4.33420 4.44858 4.48813 4.53388 4.57240 4.66583 4.74697 4.78009 4.82860 4.87491 4.96208 4.97819 5.04545 5.09153 5.23160 5.35838 5.39205 5.44003 5.62482 5.65977 5.79736 5.81685 5.87467 5.89404 6.20306 6.29478 6.43789 6.68029 7.10109 7.32481 7.67407 8.83674 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009535 B = 0.004461 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2935.987271 B = 6275.399401 C = 8113.892311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.078 3.922 3 C -0.164 4.164 4 C 0.161 3.839 5 N -0.637 5.637 6 C 0.531 3.469 7 O -0.547 6.547 8 C 0.064 3.936 9 H 0.070 0.930 10 C -0.527 4.527 11 H 0.056 0.944 12 C 0.043 3.957 13 N -0.895 5.895 14 Si 0.949 3.051 15 H -0.264 1.264 16 H -0.284 1.284 17 H -0.279 1.279 18 C -0.035 4.035 19 C -0.135 4.135 20 C -0.131 4.131 21 C -0.142 4.142 22 C -0.135 4.135 23 C -0.109 4.109 24 C 0.205 3.795 25 N -0.487 5.487 26 C 0.034 3.966 27 C 0.026 3.974 28 N -0.271 5.271 29 N -0.279 5.279 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.180 0.820 34 H 0.430 0.570 35 H 0.268 0.732 36 H 0.107 0.893 37 H 0.137 0.863 38 H 0.144 0.856 39 H 0.134 0.866 40 H 0.098 0.902 41 H 0.046 0.954 42 H 0.101 0.899 43 H 0.064 0.936 44 H 0.061 0.939 45 H 0.112 0.888 46 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.588 -7.041 -1.875 8.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.068 4.068 3 C -0.196 4.196 4 C 0.049 3.951 5 N -0.279 5.279 6 C 0.323 3.677 7 O -0.425 6.425 8 C 0.043 3.957 9 H 0.088 0.912 10 C -0.565 4.565 11 H 0.074 0.926 12 C -0.161 4.161 13 N -0.531 5.531 14 Si 0.775 3.225 15 H -0.189 1.189 16 H -0.209 1.209 17 H -0.205 1.205 18 C -0.036 4.036 19 C -0.153 4.153 20 C -0.149 4.149 21 C -0.160 4.160 22 C -0.153 4.153 23 C -0.127 4.127 24 C -0.037 4.037 25 N -0.209 5.209 26 C -0.113 4.113 27 C -0.120 4.120 28 N -0.114 5.114 29 N -0.124 5.124 30 H 0.116 0.884 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.196 0.804 34 H 0.270 0.730 35 H 0.077 0.923 36 H 0.125 0.875 37 H 0.155 0.845 38 H 0.162 0.838 39 H 0.152 0.848 40 H 0.116 0.884 41 H 0.064 0.936 42 H 0.119 0.881 43 H 0.083 0.917 44 H 0.080 0.920 45 H 0.130 0.870 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -5.006 -8.121 -1.828 9.714 hybrid contribution 1.136 1.263 0.558 1.788 sum -3.870 -6.858 -1.270 7.977 Atomic orbital electron populations 1.20737 0.84753 1.04844 1.04704 1.23231 1.00677 0.88649 0.94197 1.23135 0.92575 1.02504 1.01386 1.18901 0.92181 0.86823 0.97145 1.43508 1.15579 1.04654 1.64132 1.21883 0.88239 0.84924 0.72653 1.90412 1.16787 1.85467 1.49791 1.17941 0.92437 0.85887 0.99429 0.91226 1.20693 1.05650 1.39806 0.90334 0.92571 1.25492 0.97242 0.94017 0.99337 1.70002 1.18695 1.35531 1.28874 0.85744 0.77769 0.78720 0.80316 1.18916 1.20906 1.20472 1.19979 0.93677 0.97127 0.92848 1.21094 0.99801 0.98214 0.96211 1.21283 0.96278 0.96813 1.00523 1.21264 0.99317 1.01075 0.94352 1.21310 0.99976 0.96524 0.97525 1.20852 0.95969 0.97137 0.98725 1.21341 0.92692 0.89160 1.00518 1.59597 1.02013 1.33402 1.25900 1.22365 1.02139 0.86362 1.00395 1.22587 1.02459 1.01248 0.85745 1.72915 1.00427 1.25861 1.12239 1.72513 1.00571 1.25612 1.13680 0.88444 0.89193 0.89073 0.80353 0.72992 0.92264 0.87506 0.84519 0.83807 0.84773 0.88396 0.93570 0.88066 0.91744 0.92026 0.86975 0.94204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.94 10.19 71.23 0.73 -1.22 16 2 C 0.08 2.38 6.86 42.66 0.29 2.67 16 3 C -0.16 -5.63 8.71 22.60 0.20 -5.43 16 4 C 0.16 5.66 6.42 38.58 0.25 5.90 16 5 N -0.64 -23.35 4.50 -302.37 -1.36 -24.71 16 6 C 0.53 22.07 6.97 87.66 0.61 22.68 16 7 O -0.55 -23.68 12.18 -3.08 -0.04 -23.72 16 8 C 0.06 2.89 2.27 -13.03 -0.03 2.86 16 9 H 0.07 3.35 7.35 -2.39 -0.02 3.33 16 10 C -0.53 -25.20 7.38 25.60 0.19 -25.01 16 11 H 0.06 2.72 7.82 -2.91 -0.02 2.70 16 12 C 0.04 2.07 5.45 84.66 0.46 2.53 16 13 N -0.90 -45.49 12.96 21.45 0.28 -45.21 16 14 Si 0.95 39.31 29.54 68.60 2.03 41.33 16 15 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 16 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 17 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 18 C -0.04 -1.57 4.29 -19.87 -0.09 -1.66 16 19 C -0.13 -5.60 9.67 22.27 0.22 -5.38 16 20 C -0.13 -4.58 10.05 22.27 0.22 -4.36 16 21 C -0.14 -4.63 10.05 22.27 0.22 -4.41 16 22 C -0.14 -4.83 10.05 22.27 0.22 -4.61 16 23 C -0.11 -4.61 8.34 22.27 0.19 -4.42 16 24 C 0.21 6.70 6.04 133.28 0.80 7.50 16 25 N -0.49 -13.38 4.40 -750.56 -3.30 -16.68 16 26 C 0.03 0.77 8.95 127.69 1.14 1.91 16 27 C 0.03 0.61 9.31 127.69 1.19 1.80 16 28 N -0.27 -9.13 10.02 -54.65 -0.55 -9.68 16 29 N -0.28 -9.30 11.40 -47.65 -0.54 -9.85 16 30 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.09 1.73 8.09 -2.38 -0.02 1.71 16 32 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.18 6.49 5.23 -4.65 -0.02 6.46 16 34 H 0.43 15.33 7.84 -92.71 -0.73 14.60 16 35 H 0.27 13.12 8.31 -92.70 -0.77 12.35 16 36 H 0.11 4.37 7.96 -2.91 -0.02 4.35 16 37 H 0.14 3.86 8.06 -2.91 -0.02 3.84 16 38 H 0.14 3.56 8.06 -2.92 -0.02 3.54 16 39 H 0.13 3.93 8.06 -2.91 -0.02 3.91 16 40 H 0.10 4.28 7.87 -2.91 -0.02 4.26 16 41 H 0.05 1.07 7.66 -2.38 -0.02 1.05 16 42 H 0.10 1.71 8.13 -2.39 -0.02 1.69 16 43 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 44 H 0.06 1.64 7.17 -2.38 -0.02 1.63 16 45 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 46 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -59.30 385.62 3.60 -55.70 By element: Atomic # 1 Polarization: 41.17 SS G_CDS: 0.27 Total: 41.44 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: 6.82 Total: -8.63 kcal Atomic # 7 Polarization: -100.65 SS G_CDS: -5.47 Total: -106.12 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.04 Total: -23.72 kcal Atomic # 14 Polarization: 39.31 SS G_CDS: 2.03 Total: 41.33 kcal Total: -59.30 3.60 -55.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361903643.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.368 kcal (2) G-P(sol) polarization free energy of solvation -59.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds