Wall clock time and date at job start Tue Mar 31 2020 22:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38280 * 119.93186 * 2 1 4 4 C 1.38109 * 120.07223 * 180.02562 * 3 2 1 5 5 C 1.38880 * 119.92624 * 359.97438 * 4 3 2 6 6 N 1.39928 * 120.06389 * 179.72060 * 5 4 3 7 7 C 1.46495 * 120.00460 * 353.00144 * 6 5 4 8 8 C 1.50700 * 109.47546 * 84.83016 * 7 6 5 9 9 H 1.08001 * 119.99441 * 359.97438 * 8 7 6 10 10 C 1.37867 * 120.00186 * 180.02562 * 8 7 6 11 11 N 1.31519 * 120.00080 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 120.00251 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47109 * 0.02562 * 12 10 8 14 14 H 1.48506 * 109.47079 * 119.99773 * 12 10 8 15 15 H 1.48503 * 109.47498 * 239.99859 * 12 10 8 16 16 C 1.34778 * 119.99369 * 172.99919 * 6 5 4 17 17 O 1.21285 * 120.00428 * 4.92663 * 16 6 5 18 18 C 1.50704 * 119.99938 * 184.92704 * 16 6 5 19 19 H 1.08999 * 109.71036 * 42.32187 * 18 16 6 20 20 C 1.53422 * 109.71607 * 162.92371 * 18 16 6 21 21 C 1.53167 * 109.25483 * 168.36608 * 20 18 16 22 22 C 1.53298 * 109.48927 * 290.82994 * 21 20 18 23 23 N 1.46303 * 108.77527 * 50.13594 * 22 21 20 24 24 N 1.39753 * 128.31300 * 162.90219 * 23 22 21 25 25 C 1.30982 * 106.58433 * 180.11183 * 24 23 22 26 26 N 1.33468 * 109.00220 * 359.97263 * 25 24 23 27 27 C 1.30275 * 109.74792 * 0.02562 * 26 25 24 28 28 C 1.38866 * 119.85967 * 359.97438 * 5 4 3 29 29 C 1.38112 * 119.93200 * 0.04582 * 28 5 4 30 30 H 1.08996 * 109.47134 * 90.00125 * 1 2 3 31 31 H 1.08999 * 109.47476 * 209.99986 * 1 2 3 32 32 H 1.08997 * 109.47022 * 330.00238 * 1 2 3 33 33 H 1.08002 * 119.96526 * 0.02562 * 3 2 1 34 34 H 1.07994 * 120.03571 * 179.97438 * 4 3 2 35 35 H 1.09005 * 109.47134 * 204.83450 * 7 6 5 36 36 H 1.09004 * 109.47068 * 324.82887 * 7 6 5 37 37 H 0.97001 * 119.99813 * 180.02562 * 11 10 8 38 38 H 1.08995 * 109.50936 * 288.30137 * 20 18 16 39 39 H 1.09002 * 109.50643 * 48.39276 * 20 18 16 40 40 H 1.09005 * 109.46340 * 50.83572 * 21 20 18 41 41 H 1.08996 * 109.46615 * 170.81957 * 21 20 18 42 42 H 1.08995 * 109.58980 * 169.92971 * 22 21 20 43 43 H 1.09002 * 109.58916 * 290.35406 * 22 21 20 44 44 H 1.07994 * 125.49710 * 179.97438 * 25 24 23 45 45 H 1.08002 * 120.03151 * 179.97438 * 28 5 4 46 46 H 1.08004 * 119.96524 * 179.97438 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1984 0.0000 4 6 3.5781 1.2017 -0.0005 5 6 4.2739 -0.0002 -0.0005 6 7 5.6731 -0.0001 -0.0070 7 6 6.4049 1.2587 -0.1683 8 6 6.5514 1.9301 1.1729 9 1 6.1401 1.4657 2.0570 10 6 7.2096 3.1375 1.2711 11 7 7.7100 3.7032 0.1944 12 14 7.3906 3.9701 2.9335 13 1 6.7457 3.1348 3.9783 14 1 8.8321 4.1334 3.2510 15 1 6.7385 5.3037 2.8929 16 6 6.3476 -1.1583 0.1353 17 8 5.7447 -2.2098 0.1791 18 6 7.8509 -1.1468 0.2399 19 1 8.1680 -0.3316 0.8903 20 6 8.3403 -2.4843 0.8104 21 6 9.8600 -2.5787 0.6438 22 6 10.2034 -2.7243 -0.8431 23 7 9.5007 -1.6829 -1.5928 24 7 9.7553 -1.2272 -2.8892 25 6 8.8758 -0.2882 -3.1349 26 7 8.0913 -0.1370 -2.0658 27 6 8.4555 -0.9686 -1.1314 28 6 3.5780 -1.2019 0.0005 29 6 2.1969 -1.1985 0.0007 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6553 2.1327 0.0004 34 1 4.1163 2.1380 -0.0010 35 1 7.3924 1.0544 -0.5822 36 1 5.8560 1.9140 -0.8446 37 1 8.1733 4.5526 0.2637 38 1 8.0858 -2.5436 1.8686 39 1 7.8631 -3.3049 0.2747 40 1 10.3254 -1.6750 1.0374 41 1 10.2320 -3.4460 1.1892 42 1 11.2786 -2.6125 -0.9825 43 1 9.8871 -3.7056 -1.1969 44 1 8.7979 0.2730 -4.0543 45 1 4.1163 -2.1382 0.0001 46 1 1.6551 -2.1328 0.0011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362009742.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:20 Heat of formation + Delta-G solvation = 96.759890 kcal Electronic energy + Delta-G solvation = -30452.254044 eV Core-core repulsion = 26537.256185 eV Total energy + Delta-G solvation = -3914.997859 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.18842 -40.19165 -38.19439 -36.62984 -35.37626 -33.31234 -32.68326 -31.23439 -30.39798 -30.26942 -29.52829 -27.48933 -26.26870 -24.58757 -23.30824 -22.80890 -21.86630 -21.70690 -21.05669 -19.59790 -18.70148 -17.15088 -16.80550 -16.62219 -16.13284 -15.85345 -15.03269 -14.96991 -14.80611 -14.49103 -14.32562 -14.28316 -13.86568 -13.50585 -13.31560 -13.04288 -12.91770 -12.80236 -12.45833 -12.12957 -12.07601 -11.87152 -11.68792 -11.53083 -11.50466 -11.27933 -11.16805 -10.98921 -10.86597 -10.70749 -10.47642 -10.21412 -10.02227 -9.58134 -9.47337 -9.32844 -8.91018 -8.67830 -8.52772 -8.27283 -7.04595 -6.18033 -4.27353 1.77079 1.88100 2.08324 2.42447 3.10870 3.18895 3.21692 3.28615 3.32830 3.66246 4.18931 4.29372 4.33978 4.49825 4.58477 4.61343 5.03474 5.06107 5.10013 5.13839 5.27347 5.36657 5.39642 5.44368 5.58947 5.62839 5.66025 5.72750 5.76125 5.84815 5.91556 6.03468 6.14719 6.19588 6.30728 6.35604 6.55930 6.62712 6.66786 6.89228 6.95101 7.04281 7.05861 7.22637 7.37596 7.50437 7.73484 7.88482 8.01819 8.17990 8.39628 8.65679 8.83937 9.39156 10.87071 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008237 B = 0.005245 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3398.380308 B = 5337.589360 C = 7303.665208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.131 4.131 3 C -0.105 4.105 4 C -0.134 4.134 5 C 0.165 3.835 6 N -0.514 5.514 7 C 0.218 3.782 8 C -0.546 4.546 9 H 0.061 0.939 10 C 0.069 3.931 11 N -0.881 5.881 12 Si 0.892 3.108 13 H -0.271 1.271 14 H -0.283 1.283 15 H -0.282 1.282 16 C 0.535 3.465 17 O -0.542 6.542 18 C -0.029 4.029 19 H 0.143 0.857 20 C -0.112 4.112 21 C -0.137 4.137 22 C 0.128 3.872 23 N -0.377 5.377 24 N -0.324 5.324 25 C 0.199 3.801 26 N -0.511 5.511 27 C 0.295 3.705 28 C -0.177 4.177 29 C -0.109 4.109 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.116 0.884 34 H 0.141 0.859 35 H 0.083 0.917 36 H 0.042 0.958 37 H 0.264 0.736 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.099 0.901 42 H 0.094 0.906 43 H 0.086 0.914 44 H 0.216 0.784 45 H 0.177 0.823 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.031 -10.385 -0.458 10.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.132 4.132 3 C -0.124 4.124 4 C -0.154 4.154 5 C 0.069 3.931 6 N -0.231 5.231 7 C 0.100 3.900 8 C -0.585 4.585 9 H 0.080 0.920 10 C -0.135 4.135 11 N -0.519 5.519 12 Si 0.719 3.281 13 H -0.196 1.196 14 H -0.209 1.209 15 H -0.207 1.207 16 C 0.323 3.677 17 O -0.423 6.423 18 C -0.053 4.053 19 H 0.161 0.839 20 C -0.150 4.150 21 C -0.176 4.176 22 C 0.006 3.994 23 N -0.169 5.169 24 N -0.152 5.152 25 C -0.104 4.104 26 N -0.237 5.237 27 C 0.018 3.982 28 C -0.196 4.196 29 C -0.128 4.128 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.134 0.866 34 H 0.159 0.841 35 H 0.100 0.900 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.110 0.890 39 H 0.104 0.896 40 H 0.100 0.900 41 H 0.117 0.883 42 H 0.112 0.888 43 H 0.105 0.895 44 H 0.233 0.767 45 H 0.193 0.807 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.281 -10.778 -1.004 10.829 hybrid contribution 0.244 0.961 0.958 1.379 sum 0.525 -9.817 -0.046 9.831 Atomic orbital electron populations 1.20656 0.92179 1.01831 1.01371 1.19770 0.95355 0.93555 1.04535 1.20734 0.93524 0.97006 1.01154 1.21144 0.93919 0.97952 1.02422 1.18059 0.82734 0.94193 0.98106 1.45900 1.04055 1.10138 1.62996 1.20081 0.94314 0.78215 0.97422 1.21523 1.37266 1.05940 0.93755 0.92048 1.24895 0.95101 0.96773 0.96713 1.69970 1.36301 1.17796 1.27809 0.86535 0.77860 0.79650 0.84047 1.19591 1.20896 1.20744 1.19854 0.88529 0.83208 0.76117 1.90257 1.68032 1.31971 1.52011 1.20166 0.92906 1.02235 0.89979 0.83917 1.21625 0.94387 0.95774 1.03233 1.22027 0.97067 1.04696 0.93768 1.21856 0.97716 0.89116 0.90678 1.50253 1.25553 1.29996 1.11070 1.77873 1.25119 1.17416 0.94811 1.26110 0.90329 0.95157 0.98758 1.70486 1.29128 1.23520 1.00550 1.23578 0.88376 0.89906 0.96354 1.22692 0.94330 1.00184 1.02420 1.20864 0.93993 0.96701 1.01247 0.92126 0.92351 0.92241 0.86591 0.84139 0.89977 0.94018 0.92591 0.89015 0.89576 0.89995 0.88271 0.88766 0.89534 0.76745 0.80673 0.86957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.28 10.01 36.01 0.36 -0.92 16 2 C -0.13 -2.14 5.88 -104.59 -0.62 -2.75 16 3 C -0.11 -1.85 9.69 -39.61 -0.38 -2.24 16 4 C -0.13 -2.75 9.03 -39.39 -0.36 -3.10 16 5 C 0.16 3.53 6.47 -83.69 -0.54 2.98 16 6 N -0.51 -11.25 2.69 -114.73 -0.31 -11.56 16 7 C 0.22 5.21 3.82 -5.20 -0.02 5.19 16 8 C -0.55 -13.85 8.50 -34.44 -0.29 -14.14 16 9 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 10 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 11 N -0.88 -23.95 13.29 55.43 0.74 -23.21 16 12 Si 0.89 20.13 29.54 -169.99 -5.02 15.11 16 13 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 14 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 15 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 16 C 0.53 10.77 6.75 -10.98 -0.07 10.70 16 17 O -0.54 -11.07 12.19 5.55 0.07 -11.00 16 18 C -0.03 -0.50 2.07 -92.59 -0.19 -0.70 16 19 H 0.14 2.62 7.22 -51.93 -0.38 2.24 16 20 C -0.11 -1.41 4.95 -26.43 -0.13 -1.54 16 21 C -0.14 -1.31 5.95 -26.49 -0.16 -1.46 16 22 C 0.13 1.39 7.30 -3.99 -0.03 1.36 16 23 N -0.38 -5.97 4.04 -58.29 -0.24 -6.20 16 24 N -0.32 -5.49 12.74 29.38 0.37 -5.11 16 25 C 0.20 3.42 13.04 -91.39 -1.19 2.23 16 26 N -0.51 -10.19 8.66 -11.83 -0.10 -10.30 16 27 C 0.29 5.36 6.53 -155.77 -1.02 4.34 16 28 C -0.18 -3.50 9.05 -39.40 -0.36 -3.86 16 29 C -0.11 -1.87 9.69 -39.61 -0.38 -2.26 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 32 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 33 H 0.12 1.76 8.06 -52.49 -0.42 1.33 16 34 H 0.14 3.09 6.15 -52.49 -0.32 2.77 16 35 H 0.08 2.01 4.00 -51.93 -0.21 1.80 16 36 H 0.04 1.09 6.84 -51.93 -0.36 0.73 16 37 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 38 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.09 1.14 7.48 -51.93 -0.39 0.75 16 40 H 0.08 0.82 8.12 -51.93 -0.42 0.39 16 41 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.22 2.87 8.06 -52.49 -0.42 2.45 16 45 H 0.18 3.59 4.54 -56.18 -0.25 3.33 16 46 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 LS Contribution 370.17 15.07 5.58 5.58 Total: -1.00 -31.20 370.17 -10.48 -41.68 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -6.09 Total: 9.49 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -5.48 Total: -4.47 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: 0.46 Total: -56.38 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.07 Total: -11.00 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.20 -10.48 -41.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362009742.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.437 kcal (2) G-P(sol) polarization free energy of solvation -31.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds