Wall clock time and date at job start Tue Mar 31 2020 22:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38280 * 119.93186 * 2 1 4 4 C 1.38109 * 120.07223 * 180.02562 * 3 2 1 5 5 C 1.38880 * 119.92624 * 359.97438 * 4 3 2 6 6 N 1.39928 * 120.06389 * 179.72060 * 5 4 3 7 7 C 1.46495 * 120.00460 * 353.00144 * 6 5 4 8 8 C 1.50700 * 109.47546 * 84.83016 * 7 6 5 9 9 H 1.08001 * 119.99441 * 359.97438 * 8 7 6 10 10 C 1.37867 * 120.00186 * 180.02562 * 8 7 6 11 11 N 1.31519 * 120.00080 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 120.00251 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47109 * 0.02562 * 12 10 8 14 14 H 1.48506 * 109.47079 * 119.99773 * 12 10 8 15 15 H 1.48503 * 109.47498 * 239.99859 * 12 10 8 16 16 C 1.34778 * 119.99369 * 172.99919 * 6 5 4 17 17 O 1.21285 * 120.00428 * 4.92663 * 16 6 5 18 18 C 1.50704 * 119.99938 * 184.92704 * 16 6 5 19 19 H 1.08999 * 109.71036 * 42.32187 * 18 16 6 20 20 C 1.53422 * 109.71607 * 162.92371 * 18 16 6 21 21 C 1.53167 * 109.25483 * 168.36608 * 20 18 16 22 22 C 1.53298 * 109.48927 * 290.82994 * 21 20 18 23 23 N 1.46303 * 108.77527 * 50.13594 * 22 21 20 24 24 N 1.39753 * 128.31300 * 162.90219 * 23 22 21 25 25 C 1.30982 * 106.58433 * 180.11183 * 24 23 22 26 26 N 1.33468 * 109.00220 * 359.97263 * 25 24 23 27 27 C 1.30275 * 109.74792 * 0.02562 * 26 25 24 28 28 C 1.38866 * 119.85967 * 359.97438 * 5 4 3 29 29 C 1.38112 * 119.93200 * 0.04582 * 28 5 4 30 30 H 1.08996 * 109.47134 * 90.00125 * 1 2 3 31 31 H 1.08999 * 109.47476 * 209.99986 * 1 2 3 32 32 H 1.08997 * 109.47022 * 330.00238 * 1 2 3 33 33 H 1.08002 * 119.96526 * 0.02562 * 3 2 1 34 34 H 1.07994 * 120.03571 * 179.97438 * 4 3 2 35 35 H 1.09005 * 109.47134 * 204.83450 * 7 6 5 36 36 H 1.09004 * 109.47068 * 324.82887 * 7 6 5 37 37 H 0.97001 * 119.99813 * 180.02562 * 11 10 8 38 38 H 1.08995 * 109.50936 * 288.30137 * 20 18 16 39 39 H 1.09002 * 109.50643 * 48.39276 * 20 18 16 40 40 H 1.09005 * 109.46340 * 50.83572 * 21 20 18 41 41 H 1.08996 * 109.46615 * 170.81957 * 21 20 18 42 42 H 1.08995 * 109.58980 * 169.92971 * 22 21 20 43 43 H 1.09002 * 109.58916 * 290.35406 * 22 21 20 44 44 H 1.07994 * 125.49710 * 179.97438 * 25 24 23 45 45 H 1.08002 * 120.03151 * 179.97438 * 28 5 4 46 46 H 1.08004 * 119.96524 * 179.97438 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1984 0.0000 4 6 3.5781 1.2017 -0.0005 5 6 4.2739 -0.0002 -0.0005 6 7 5.6731 -0.0001 -0.0070 7 6 6.4049 1.2587 -0.1683 8 6 6.5514 1.9301 1.1729 9 1 6.1401 1.4657 2.0570 10 6 7.2096 3.1375 1.2711 11 7 7.7100 3.7032 0.1944 12 14 7.3906 3.9701 2.9335 13 1 6.7457 3.1348 3.9783 14 1 8.8321 4.1334 3.2510 15 1 6.7385 5.3037 2.8929 16 6 6.3476 -1.1583 0.1353 17 8 5.7447 -2.2098 0.1791 18 6 7.8509 -1.1468 0.2399 19 1 8.1680 -0.3316 0.8903 20 6 8.3403 -2.4843 0.8104 21 6 9.8600 -2.5787 0.6438 22 6 10.2034 -2.7243 -0.8431 23 7 9.5007 -1.6829 -1.5928 24 7 9.7553 -1.2272 -2.8892 25 6 8.8758 -0.2882 -3.1349 26 7 8.0913 -0.1370 -2.0658 27 6 8.4555 -0.9686 -1.1314 28 6 3.5780 -1.2019 0.0005 29 6 2.1969 -1.1985 0.0007 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6553 2.1327 0.0004 34 1 4.1163 2.1380 -0.0010 35 1 7.3924 1.0544 -0.5822 36 1 5.8560 1.9140 -0.8446 37 1 8.1733 4.5526 0.2637 38 1 8.0858 -2.5436 1.8686 39 1 7.8631 -3.3049 0.2747 40 1 10.3254 -1.6750 1.0374 41 1 10.2320 -3.4460 1.1892 42 1 11.2786 -2.6125 -0.9825 43 1 9.8871 -3.7056 -1.1969 44 1 8.7979 0.2730 -4.0543 45 1 4.1163 -2.1382 0.0001 46 1 1.6551 -2.1328 0.0011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362009742.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:19 Heat of formation + Delta-G solvation = 81.123806 kcal Electronic energy + Delta-G solvation = -30452.932075 eV Core-core repulsion = 26537.256185 eV Total energy + Delta-G solvation = -3915.675890 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.49745 -41.73722 -39.61578 -37.75478 -37.02583 -34.76651 -34.44960 -32.59272 -31.76528 -31.57313 -30.75364 -29.34746 -27.53453 -25.80364 -25.12977 -23.96575 -23.23520 -23.18162 -22.40333 -20.93752 -20.04557 -18.75907 -18.52050 -18.13472 -17.59774 -17.18821 -16.48674 -16.39984 -16.16271 -16.00093 -15.66069 -15.49390 -15.24179 -14.84461 -14.54292 -14.44162 -14.32834 -14.25384 -13.97969 -13.43289 -13.32292 -13.21300 -13.14340 -12.93636 -12.83689 -12.65900 -12.59563 -12.44688 -12.22354 -12.09437 -11.90075 -11.86467 -11.76758 -11.03049 -10.84778 -10.63538 -10.58174 -10.48431 -10.15192 -9.75652 -8.63288 -8.16577 -6.34945 0.34115 0.50741 0.59572 1.23632 1.37993 1.41366 1.51946 1.65640 1.82844 2.14902 2.40273 2.91458 3.04013 3.10590 3.23476 3.43848 3.54162 3.89580 3.93567 4.10874 4.13553 4.13771 4.25580 4.27951 4.32948 4.50742 4.58589 4.61230 4.66143 4.75284 4.85554 4.93607 4.94569 4.98570 5.03013 5.20039 5.21362 5.28309 5.30635 5.32814 5.49822 5.51235 5.58075 5.71265 5.74294 5.79332 5.89830 6.03530 6.34127 6.47548 6.79139 7.05571 7.10482 7.35401 8.86166 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008237 B = 0.005245 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3398.380308 B = 5337.589360 C = 7303.665208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.122 4.122 3 C -0.106 4.106 4 C -0.156 4.156 5 C 0.131 3.869 6 N -0.525 5.525 7 C 0.242 3.758 8 C -0.547 4.547 9 H 0.051 0.949 10 C 0.026 3.974 11 N -0.913 5.913 12 Si 0.954 3.046 13 H -0.269 1.269 14 H -0.275 1.275 15 H -0.280 1.280 16 C 0.527 3.473 17 O -0.548 6.548 18 C -0.027 4.027 19 H 0.125 0.875 20 C -0.106 4.106 21 C -0.126 4.126 22 C 0.114 3.886 23 N -0.368 5.368 24 N -0.328 5.328 25 C 0.186 3.814 26 N -0.556 5.556 27 C 0.279 3.721 28 C -0.190 4.190 29 C -0.107 4.107 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.140 0.860 34 H 0.112 0.888 35 H 0.078 0.922 36 H 0.007 0.993 37 H 0.266 0.734 38 H 0.104 0.896 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.145 0.855 42 H 0.116 0.884 43 H 0.107 0.893 44 H 0.241 0.759 45 H 0.169 0.831 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.523 -12.052 0.764 12.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.123 4.123 3 C -0.125 4.125 4 C -0.177 4.177 5 C 0.036 3.964 6 N -0.242 5.242 7 C 0.122 3.878 8 C -0.586 4.586 9 H 0.069 0.931 10 C -0.175 4.175 11 N -0.552 5.552 12 Si 0.779 3.221 13 H -0.193 1.193 14 H -0.200 1.200 15 H -0.206 1.206 16 C 0.317 3.683 17 O -0.430 6.430 18 C -0.050 4.050 19 H 0.142 0.858 20 C -0.145 4.145 21 C -0.163 4.163 22 C -0.006 4.006 23 N -0.160 5.160 24 N -0.157 5.157 25 C -0.115 4.115 26 N -0.284 5.284 27 C 0.001 3.999 28 C -0.209 4.209 29 C -0.125 4.125 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.158 0.842 34 H 0.130 0.870 35 H 0.095 0.905 36 H 0.025 0.975 37 H 0.075 0.925 38 H 0.123 0.877 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.163 0.837 42 H 0.134 0.866 43 H 0.125 0.875 44 H 0.257 0.743 45 H 0.185 0.815 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -0.268 -12.484 0.232 12.489 hybrid contribution 0.315 1.421 0.526 1.547 sum 0.048 -11.063 0.757 11.089 Atomic orbital electron populations 1.20731 0.88616 1.03502 1.02889 1.20242 0.97804 0.92408 1.01832 1.21048 0.92319 0.98955 1.00129 1.21073 0.95406 0.96635 1.04564 1.18401 0.82742 0.95245 1.00045 1.45867 1.04557 1.09908 1.63847 1.19593 0.93598 0.78624 0.95962 1.21618 1.36847 1.06219 0.93880 0.93056 1.25608 0.94736 0.97239 0.99917 1.70081 1.37136 1.18233 1.29749 0.85563 0.78080 0.78418 0.80001 1.19321 1.20000 1.20557 1.20381 0.89863 0.82613 0.75480 1.90234 1.68636 1.31777 1.52308 1.20226 0.90752 1.04365 0.89697 0.85759 1.21694 0.96682 0.92593 1.03487 1.22068 0.94385 1.06606 0.93290 1.22416 0.98659 0.88578 0.90946 1.50608 1.24844 1.29934 1.10649 1.77797 1.25018 1.17315 0.95546 1.26640 0.90035 0.95628 0.99219 1.70397 1.30899 1.25113 1.01953 1.23611 0.89376 0.90426 0.96437 1.22703 0.95709 0.99076 1.03414 1.21245 0.92968 0.98579 0.99713 0.90508 0.90487 0.90875 0.84232 0.86955 0.90472 0.97488 0.92455 0.87723 0.89952 0.90376 0.83690 0.86557 0.87486 0.74315 0.81502 0.83777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.10 10.01 71.24 0.71 -1.39 16 2 C -0.12 -3.72 5.88 -19.84 -0.12 -3.84 16 3 C -0.11 -3.69 9.69 22.25 0.22 -3.48 16 4 C -0.16 -6.75 9.03 22.39 0.20 -6.54 16 5 C 0.13 5.88 6.47 38.15 0.25 6.13 16 6 N -0.52 -24.43 2.69 -635.30 -1.71 -26.14 16 7 C 0.24 12.41 3.82 85.63 0.33 12.74 16 8 C -0.55 -29.16 8.50 25.60 0.22 -28.94 16 9 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 10 C 0.03 1.38 5.46 84.65 0.46 1.84 16 11 N -0.91 -51.51 13.29 21.44 0.28 -51.22 16 12 Si 0.95 42.05 29.54 68.60 2.03 44.08 16 13 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 14 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 15 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 16 C 0.53 22.23 6.75 87.66 0.59 22.83 16 17 O -0.55 -23.06 12.19 -3.05 -0.04 -23.10 16 18 C -0.03 -0.95 2.07 -12.07 -0.02 -0.98 16 19 H 0.12 4.82 7.22 -2.39 -0.02 4.80 16 20 C -0.11 -2.58 4.95 30.79 0.15 -2.43 16 21 C -0.13 -2.06 5.95 30.75 0.18 -1.87 16 22 C 0.11 2.19 7.30 86.52 0.63 2.83 16 23 N -0.37 -11.50 4.04 -338.34 -1.37 -12.86 16 24 N -0.33 -11.08 12.74 -60.96 -0.78 -11.85 16 25 C 0.19 6.61 13.04 180.62 2.35 8.97 16 26 N -0.56 -23.34 8.66 -191.33 -1.66 -24.99 16 27 C 0.28 10.43 6.53 138.36 0.90 11.33 16 28 C -0.19 -7.63 9.05 22.39 0.20 -7.43 16 29 C -0.11 -3.50 9.69 22.25 0.22 -3.28 16 30 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.08 1.36 8.08 -2.39 -0.02 1.34 16 32 H 0.07 1.36 8.08 -2.39 -0.02 1.34 16 33 H 0.14 4.07 8.06 -2.91 -0.02 4.05 16 34 H 0.11 5.39 6.15 -2.91 -0.02 5.38 16 35 H 0.08 4.06 4.00 -2.38 -0.01 4.05 16 36 H 0.01 0.40 6.84 -2.39 -0.02 0.39 16 37 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 38 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.08 2.08 7.48 -2.39 -0.02 2.06 16 40 H 0.08 1.39 8.12 -2.38 -0.02 1.37 16 41 H 0.15 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.24 6.62 8.06 -2.91 -0.02 6.60 16 45 H 0.17 6.99 4.54 -61.39 -0.28 6.71 16 46 H 0.14 3.75 8.06 -2.91 -0.02 3.73 16 Total: -1.00 -71.82 370.17 4.99 -66.83 By element: Atomic # 1 Polarization: 32.03 SS G_CDS: 0.74 Total: 32.78 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: 7.48 Total: 6.48 kcal Atomic # 7 Polarization: -121.85 SS G_CDS: -5.22 Total: -127.08 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.04 Total: -23.10 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Total: -71.82 4.99 -66.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362009742.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.954 kcal (2) G-P(sol) polarization free energy of solvation -71.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds