Wall clock time and date at job start Tue Mar 31 2020 23:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33475 * 125.49434 * 2 1 4 4 C 1.30336 * 109.72536 * 179.97438 * 3 2 1 5 5 N 1.34673 * 108.04230 * 0.05752 * 4 3 2 6 6 N 1.30969 * 125.50182 * 179.97438 * 2 1 3 7 7 C 1.46300 * 125.04337 * 179.88543 * 5 4 3 8 8 C 1.53302 * 108.77408 * 342.98918 * 7 5 4 9 9 H 1.08997 * 109.47212 * 290.13276 * 8 7 5 10 10 N 1.46504 * 109.46869 * 170.13749 * 8 7 5 11 11 C 1.34783 * 119.99634 * 84.99404 * 10 8 7 12 12 O 1.21280 * 120.00008 * 0.02562 * 11 10 8 13 13 C 1.50700 * 119.99629 * 180.02562 * 11 10 8 14 14 H 1.08991 * 109.47355 * 60.00113 * 13 11 10 15 15 C 1.50704 * 109.47074 * 299.99926 * 13 11 10 16 16 H 1.08003 * 119.99975 * 324.88644 * 15 13 11 17 17 C 1.37875 * 120.00237 * 144.87939 * 15 13 11 18 18 N 1.31515 * 119.99824 * 5.19777 * 17 15 13 19 19 Si 1.86797 * 120.00313 * 185.19509 * 17 15 13 20 20 H 1.48496 * 109.47132 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47205 * 120.00502 * 19 17 15 22 22 H 1.48503 * 109.47151 * 240.00446 * 19 17 15 23 23 C 1.50701 * 109.46978 * 180.02562 * 13 11 10 24 24 C 1.38234 * 120.00044 * 66.00816 * 23 13 11 25 25 C 1.38240 * 119.99371 * 179.81098 * 24 23 13 26 26 C 1.38233 * 120.00044 * 0.42230 * 25 24 23 27 27 C 1.38232 * 120.00115 * 359.80826 * 26 25 24 28 28 C 1.38229 * 120.00384 * 0.02562 * 27 26 25 29 29 C 1.53161 * 109.48295 * 50.13801 * 8 7 5 30 30 C 1.50925 * 127.90231 * 180.10702 * 4 3 2 31 31 H 1.09003 * 109.47061 * 269.99659 * 1 2 3 32 32 H 1.08996 * 109.47410 * 30.00181 * 1 2 3 33 33 H 1.09003 * 109.47000 * 149.99904 * 1 2 3 34 34 H 1.09002 * 109.58462 * 223.19983 * 7 5 4 35 35 H 1.09001 * 109.58675 * 102.77792 * 7 5 4 36 36 H 0.96996 * 119.99812 * 264.99801 * 10 8 7 37 37 H 0.96999 * 120.00475 * 179.97438 * 18 17 15 38 38 H 1.07994 * 120.00305 * 359.97438 * 24 23 13 39 39 H 1.07997 * 119.99635 * 180.20232 * 25 24 23 40 40 H 1.08000 * 119.99639 * 179.79111 * 26 25 24 41 41 H 1.08002 * 119.99664 * 179.97438 * 27 26 25 42 42 H 1.07995 * 120.00650 * 179.97438 * 28 27 26 43 43 H 1.09001 * 109.50540 * 50.74618 * 29 8 7 44 44 H 1.09005 * 109.50675 * 170.88389 * 29 8 7 45 45 H 1.08997 * 109.71439 * 283.69722 * 30 4 3 46 46 H 1.09000 * 109.71797 * 44.30537 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2820 1.0867 0.0000 4 6 3.5363 0.7325 0.0005 5 7 3.5897 -0.6132 -0.0004 6 7 2.2675 -1.0662 0.0005 7 6 4.8198 -1.4050 -0.0025 8 6 5.9854 -0.5048 -0.4282 9 1 5.8849 -0.2553 -1.4845 10 7 7.2513 -1.2096 -0.2112 11 6 7.7250 -2.0493 -1.1531 12 8 7.1036 -2.2210 -2.1803 13 6 9.0269 -2.7748 -0.9297 14 1 8.9479 -3.3967 -0.0381 15 6 10.1360 -1.7712 -0.7455 16 1 10.1213 -0.8428 -1.2972 17 6 11.1693 -2.0381 0.1274 18 7 11.2421 -3.2090 0.7218 19 14 12.4660 -0.7368 0.4657 20 1 12.1588 0.4844 -0.3212 21 1 12.4683 -0.4049 1.9132 22 1 13.8015 -1.2553 0.0746 23 6 9.3292 -3.6434 -2.1235 24 6 9.5979 -3.0640 -3.3495 25 6 9.8790 -3.8608 -4.4436 26 6 9.8828 -5.2370 -4.3137 27 6 9.6095 -5.8164 -3.0888 28 6 9.3317 -5.0197 -1.9939 29 6 5.9680 0.7810 0.4039 30 6 4.7522 1.6266 0.0030 31 1 -0.3633 -0.0001 1.0277 32 1 -0.3634 0.8899 -0.5138 33 1 -0.3633 -0.8900 -0.5139 34 1 4.7209 -2.2318 -0.7059 35 1 5.0055 -1.7944 0.9985 36 1 7.7484 -1.0720 0.6102 37 1 11.9692 -3.3971 1.3356 38 1 9.5907 -1.9890 -3.4519 39 1 10.0921 -3.4081 -5.4007 40 1 10.0992 -5.8595 -5.1693 41 1 9.6121 -6.8916 -2.9875 42 1 9.1177 -5.4723 -1.0370 43 1 5.9029 0.5288 1.4623 44 1 6.8814 1.3465 0.2192 45 1 4.9053 2.0417 -0.9931 46 1 4.6128 2.4350 0.7208 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001435021652.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:13 Heat of formation + Delta-G solvation = 63.055452 kcal Electronic energy + Delta-G solvation = -29136.555368 eV Core-core repulsion = 25220.095975 eV Total energy + Delta-G solvation = -3916.459393 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.36223 -39.53275 -38.14416 -36.85392 -33.79507 -33.49831 -33.27790 -31.32613 -31.06310 -29.98785 -29.40123 -28.07920 -26.91060 -24.40485 -23.95111 -22.58668 -21.65432 -21.02587 -20.56491 -19.82242 -19.24279 -16.96810 -16.86374 -16.36610 -16.18663 -15.92177 -15.44241 -15.13661 -14.63139 -14.32049 -14.23625 -14.19302 -13.96103 -13.60396 -13.44490 -13.10669 -12.93366 -12.70829 -12.61444 -12.48385 -12.30905 -12.02714 -11.85635 -11.69769 -11.68031 -11.21214 -11.14748 -11.10320 -11.09665 -10.48262 -10.32952 -10.10179 -10.04399 -9.70110 -9.51398 -9.30695 -8.93401 -8.81438 -8.70942 -7.99619 -7.67301 -6.37284 -4.44663 1.59542 2.19926 2.32864 2.35653 2.82224 3.10710 3.20714 3.22970 3.45683 3.65169 3.81370 4.18121 4.28772 4.44806 4.63831 4.72435 4.78373 4.89513 5.00093 5.07798 5.14814 5.37487 5.40222 5.47544 5.50185 5.62632 5.68186 5.73436 5.74291 5.80564 5.82987 5.88504 6.12581 6.20893 6.32826 6.43156 6.43810 6.53213 6.71194 6.77372 6.90411 6.91527 7.08950 7.32377 7.38523 7.53144 7.66692 7.87515 7.97578 8.10594 8.12158 8.59443 8.99732 9.22022 10.70805 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011788 B = 0.003225 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.724544 B = 8679.866820 C =10308.816497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.210 3.790 3 N -0.542 5.542 4 C 0.276 3.724 5 N -0.366 5.366 6 N -0.315 5.315 7 C 0.115 3.885 8 C 0.136 3.864 9 H 0.097 0.903 10 N -0.721 5.721 11 C 0.529 3.471 12 O -0.560 6.560 13 C 0.053 3.947 14 H 0.090 0.910 15 C -0.517 4.517 16 H 0.064 0.936 17 C 0.074 3.926 18 N -0.875 5.875 19 Si 0.898 3.102 20 H -0.270 1.270 21 H -0.281 1.281 22 H -0.282 1.282 23 C -0.011 4.011 24 C -0.086 4.086 25 C -0.134 4.134 26 C -0.148 4.148 27 C -0.132 4.132 28 C -0.118 4.118 29 C -0.137 4.137 30 C -0.036 4.036 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.411 0.589 37 H 0.267 0.733 38 H 0.110 0.890 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.112 0.888 43 H 0.079 0.921 44 H 0.100 0.900 45 H 0.102 0.898 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.363 5.693 0.991 11.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.072 4.072 3 N -0.271 5.271 4 C -0.001 4.001 5 N -0.156 5.156 6 N -0.144 5.144 7 C -0.009 4.009 8 C 0.028 3.972 9 H 0.115 0.885 10 N -0.374 5.374 11 C 0.320 3.680 12 O -0.438 6.438 13 C 0.032 3.968 14 H 0.108 0.892 15 C -0.555 4.555 16 H 0.082 0.918 17 C -0.131 4.131 18 N -0.511 5.511 19 Si 0.725 3.275 20 H -0.194 1.194 21 H -0.207 1.207 22 H -0.208 1.208 23 C -0.012 4.012 24 C -0.104 4.104 25 C -0.152 4.152 26 C -0.166 4.166 27 C -0.150 4.150 28 C -0.136 4.136 29 C -0.175 4.175 30 C -0.076 4.076 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.098 0.902 34 H 0.120 0.880 35 H 0.109 0.891 36 H 0.247 0.753 37 H 0.077 0.923 38 H 0.129 0.871 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.125 0.875 42 H 0.130 0.870 43 H 0.097 0.903 44 H 0.119 0.881 45 H 0.121 0.879 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -11.000 4.952 0.386 12.069 hybrid contribution 1.394 0.476 0.618 1.597 sum -9.606 5.428 1.004 11.079 Atomic orbital electron populations 1.20040 0.84048 1.03842 1.03465 1.24386 0.98181 0.85647 0.98982 1.70150 0.99845 1.30884 1.26203 1.24306 0.95008 0.84122 0.96634 1.50140 1.05666 1.05855 1.53974 1.77936 0.86744 1.22653 1.27080 1.22473 0.78962 0.95288 1.04145 1.20975 0.83937 0.90652 1.01607 0.88493 1.45895 1.21357 1.46860 1.23290 1.21875 0.87006 0.77493 0.81671 1.90615 1.60805 1.64666 1.27667 1.18115 0.89255 0.94662 0.94813 0.89186 1.20710 1.06441 1.02713 1.25596 0.91755 1.24981 0.97642 0.95433 0.95058 1.69920 1.32129 1.20682 1.28347 0.86430 0.81340 0.81580 0.78142 1.19442 1.20662 1.20794 1.19993 0.93659 0.92977 0.94601 1.20812 0.97979 0.99257 0.92331 1.20957 1.02210 0.93861 0.98221 1.20806 1.03920 0.94835 0.97047 1.20907 1.01938 0.98679 0.93455 1.20982 1.01075 0.93672 0.97848 1.22056 0.99055 0.95657 1.00738 1.20334 0.86505 0.95769 1.04993 0.90092 0.89725 0.90161 0.88037 0.89148 0.75267 0.92300 0.87143 0.87588 0.87694 0.87542 0.87019 0.90257 0.88136 0.87945 0.87461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.52 10.51 36.00 0.38 -0.14 16 2 C 0.21 2.99 8.15 -156.43 -1.27 1.72 16 3 N -0.54 -7.97 11.18 -8.03 -0.09 -8.06 16 4 C 0.28 3.74 7.72 -155.78 -1.20 2.53 16 5 N -0.37 -5.42 4.04 -58.29 -0.24 -5.66 16 6 N -0.31 -5.04 12.74 32.50 0.41 -4.62 16 7 C 0.11 1.59 6.87 -3.99 -0.03 1.57 16 8 C 0.14 1.79 2.47 -67.69 -0.17 1.62 16 9 H 0.10 1.46 7.55 -51.93 -0.39 1.06 16 10 N -0.72 -11.15 4.98 -53.57 -0.27 -11.42 16 11 C 0.53 10.50 7.01 -10.98 -0.08 10.42 16 12 O -0.56 -12.44 15.08 5.56 0.08 -12.35 16 13 C 0.05 1.15 2.38 -94.07 -0.22 0.93 16 14 H 0.09 2.09 7.13 -51.93 -0.37 1.72 16 15 C -0.52 -11.97 7.47 -34.44 -0.26 -12.23 16 16 H 0.06 1.51 7.82 -52.48 -0.41 1.10 16 17 C 0.07 1.77 5.45 -17.82 -0.10 1.67 16 18 N -0.88 -21.93 12.84 55.43 0.71 -21.22 16 19 Si 0.90 18.75 29.54 -169.99 -5.02 13.73 16 20 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 21 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 22 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 23 C -0.01 -0.25 4.30 -104.62 -0.45 -0.70 16 24 C -0.09 -1.86 8.31 -39.58 -0.33 -2.18 16 25 C -0.13 -2.59 10.05 -39.58 -0.40 -2.99 16 26 C -0.15 -2.70 10.05 -39.59 -0.40 -3.10 16 27 C -0.13 -2.49 10.05 -39.59 -0.40 -2.89 16 28 C -0.12 -2.49 9.67 -39.58 -0.38 -2.87 16 29 C -0.14 -1.32 5.43 -26.43 -0.14 -1.46 16 30 C -0.04 -0.34 6.33 -27.55 -0.17 -0.52 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 35 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.41 5.91 8.49 -40.82 -0.35 5.56 16 37 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16 38 H 0.11 2.40 7.89 -52.49 -0.41 1.99 16 39 H 0.11 1.75 8.06 -52.49 -0.42 1.32 16 40 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 41 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 42 H 0.11 2.27 7.96 -52.49 -0.42 1.85 16 43 H 0.08 0.70 8.12 -51.93 -0.42 0.28 16 44 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 45 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 386.50 15.07 5.82 5.82 Total: -1.00 -30.45 386.50 -10.76 -41.21 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -6.56 Total: 11.17 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: -5.62 Total: -8.61 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: 0.53 Total: -50.97 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: 0.08 Total: -12.35 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.02 Total: 13.73 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.45 -10.76 -41.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001435021652.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.267 kcal (2) G-P(sol) polarization free energy of solvation -30.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds