Wall clock time and date at job start Tue Mar 31 2020 23:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33475 * 125.49434 * 2 1 4 4 C 1.30336 * 109.72536 * 179.97438 * 3 2 1 5 5 N 1.34673 * 108.04230 * 0.05752 * 4 3 2 6 6 N 1.30969 * 125.50182 * 179.97438 * 2 1 3 7 7 C 1.46300 * 125.04337 * 179.88543 * 5 4 3 8 8 C 1.53302 * 108.77408 * 342.98918 * 7 5 4 9 9 H 1.08997 * 109.47212 * 290.13276 * 8 7 5 10 10 N 1.46504 * 109.46869 * 170.13749 * 8 7 5 11 11 C 1.34783 * 119.99634 * 84.99404 * 10 8 7 12 12 O 1.21280 * 120.00008 * 0.02562 * 11 10 8 13 13 C 1.50700 * 119.99629 * 180.02562 * 11 10 8 14 14 H 1.08991 * 109.47355 * 60.00113 * 13 11 10 15 15 C 1.50704 * 109.47074 * 299.99926 * 13 11 10 16 16 H 1.08003 * 119.99975 * 324.88644 * 15 13 11 17 17 C 1.37875 * 120.00237 * 144.87939 * 15 13 11 18 18 N 1.31515 * 119.99824 * 5.19777 * 17 15 13 19 19 Si 1.86797 * 120.00313 * 185.19509 * 17 15 13 20 20 H 1.48496 * 109.47132 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47205 * 120.00502 * 19 17 15 22 22 H 1.48503 * 109.47151 * 240.00446 * 19 17 15 23 23 C 1.50701 * 109.46978 * 180.02562 * 13 11 10 24 24 C 1.38234 * 120.00044 * 66.00816 * 23 13 11 25 25 C 1.38240 * 119.99371 * 179.81098 * 24 23 13 26 26 C 1.38233 * 120.00044 * 0.42230 * 25 24 23 27 27 C 1.38232 * 120.00115 * 359.80826 * 26 25 24 28 28 C 1.38229 * 120.00384 * 0.02562 * 27 26 25 29 29 C 1.53161 * 109.48295 * 50.13801 * 8 7 5 30 30 C 1.50925 * 127.90231 * 180.10702 * 4 3 2 31 31 H 1.09003 * 109.47061 * 269.99659 * 1 2 3 32 32 H 1.08996 * 109.47410 * 30.00181 * 1 2 3 33 33 H 1.09003 * 109.47000 * 149.99904 * 1 2 3 34 34 H 1.09002 * 109.58462 * 223.19983 * 7 5 4 35 35 H 1.09001 * 109.58675 * 102.77792 * 7 5 4 36 36 H 0.96996 * 119.99812 * 264.99801 * 10 8 7 37 37 H 0.96999 * 120.00475 * 179.97438 * 18 17 15 38 38 H 1.07994 * 120.00305 * 359.97438 * 24 23 13 39 39 H 1.07997 * 119.99635 * 180.20232 * 25 24 23 40 40 H 1.08000 * 119.99639 * 179.79111 * 26 25 24 41 41 H 1.08002 * 119.99664 * 179.97438 * 27 26 25 42 42 H 1.07995 * 120.00650 * 179.97438 * 28 27 26 43 43 H 1.09001 * 109.50540 * 50.74618 * 29 8 7 44 44 H 1.09005 * 109.50675 * 170.88389 * 29 8 7 45 45 H 1.08997 * 109.71439 * 283.69722 * 30 4 3 46 46 H 1.09000 * 109.71797 * 44.30537 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2820 1.0867 0.0000 4 6 3.5363 0.7325 0.0005 5 7 3.5897 -0.6132 -0.0004 6 7 2.2675 -1.0662 0.0005 7 6 4.8198 -1.4050 -0.0025 8 6 5.9854 -0.5048 -0.4282 9 1 5.8849 -0.2553 -1.4845 10 7 7.2513 -1.2096 -0.2112 11 6 7.7250 -2.0493 -1.1531 12 8 7.1036 -2.2210 -2.1803 13 6 9.0269 -2.7748 -0.9297 14 1 8.9479 -3.3967 -0.0381 15 6 10.1360 -1.7712 -0.7455 16 1 10.1213 -0.8428 -1.2972 17 6 11.1693 -2.0381 0.1274 18 7 11.2421 -3.2090 0.7218 19 14 12.4660 -0.7368 0.4657 20 1 12.1588 0.4844 -0.3212 21 1 12.4683 -0.4049 1.9132 22 1 13.8015 -1.2553 0.0746 23 6 9.3292 -3.6434 -2.1235 24 6 9.5979 -3.0640 -3.3495 25 6 9.8790 -3.8608 -4.4436 26 6 9.8828 -5.2370 -4.3137 27 6 9.6095 -5.8164 -3.0888 28 6 9.3317 -5.0197 -1.9939 29 6 5.9680 0.7810 0.4039 30 6 4.7522 1.6266 0.0030 31 1 -0.3633 -0.0001 1.0277 32 1 -0.3634 0.8899 -0.5138 33 1 -0.3633 -0.8900 -0.5139 34 1 4.7209 -2.2318 -0.7059 35 1 5.0055 -1.7944 0.9985 36 1 7.7484 -1.0720 0.6102 37 1 11.9692 -3.3971 1.3356 38 1 9.5907 -1.9890 -3.4519 39 1 10.0921 -3.4081 -5.4007 40 1 10.0992 -5.8595 -5.1693 41 1 9.6121 -6.8916 -2.9875 42 1 9.1177 -5.4723 -1.0370 43 1 5.9029 0.5288 1.4623 44 1 6.8814 1.3465 0.2192 45 1 4.9053 2.0417 -0.9931 46 1 4.6128 2.4350 0.7208 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001435021652.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:12 Heat of formation + Delta-G solvation = 46.310929 kcal Electronic energy + Delta-G solvation = -29137.281465 eV Core-core repulsion = 25220.095975 eV Total energy + Delta-G solvation = -3917.185490 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.42560 -41.03842 -39.58574 -38.11441 -35.52687 -34.77766 -34.28400 -32.91149 -32.19138 -31.54181 -30.46890 -29.39509 -28.24393 -25.85879 -25.20658 -23.73629 -23.21481 -22.42000 -21.69054 -21.11945 -20.51178 -18.65983 -18.07174 -17.73433 -17.57638 -17.32511 -16.73107 -16.30247 -16.13393 -15.78130 -15.56066 -15.32112 -15.18062 -14.94865 -14.68880 -14.30754 -14.10053 -13.99618 -13.91689 -13.63011 -13.46386 -13.38156 -13.28318 -12.90602 -12.82443 -12.76529 -12.74666 -12.19674 -12.16454 -12.08018 -11.93197 -11.67583 -11.24929 -11.15266 -10.79991 -10.68964 -10.50812 -10.37408 -10.12232 -9.56611 -9.26593 -8.19147 -6.31200 0.53218 0.74932 0.79019 1.12849 1.44840 1.49854 1.58991 1.77891 1.87666 2.37393 2.45367 2.90490 3.09598 3.21106 3.27038 3.47457 3.68988 3.77559 3.90822 4.13865 4.21113 4.26395 4.29059 4.34266 4.39321 4.44277 4.52721 4.66922 4.71391 4.74496 4.86061 4.87018 4.92791 4.94645 4.96511 5.05132 5.10593 5.27660 5.36042 5.43041 5.45287 5.50767 5.67860 5.76595 5.78092 5.81991 5.95086 6.22409 6.39850 6.66762 6.77970 7.03316 7.36500 7.46917 8.88855 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011788 B = 0.003225 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.724544 B = 8679.866820 C =10308.816497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C 0.205 3.795 3 N -0.560 5.560 4 C 0.275 3.725 5 N -0.379 5.379 6 N -0.356 5.356 7 C 0.122 3.878 8 C 0.141 3.859 9 H 0.078 0.922 10 N -0.705 5.705 11 C 0.531 3.469 12 O -0.587 6.587 13 C 0.054 3.946 14 H 0.069 0.931 15 C -0.514 4.514 16 H 0.059 0.941 17 C 0.035 3.965 18 N -0.906 5.906 19 Si 0.955 3.045 20 H -0.264 1.264 21 H -0.272 1.272 22 H -0.293 1.293 23 C -0.038 4.038 24 C -0.110 4.110 25 C -0.136 4.136 26 C -0.145 4.145 27 C -0.132 4.132 28 C -0.143 4.143 29 C -0.126 4.126 30 C -0.031 4.031 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.100 0.900 36 H 0.418 0.582 37 H 0.266 0.734 38 H 0.099 0.901 39 H 0.135 0.865 40 H 0.145 0.855 41 H 0.137 0.863 42 H 0.107 0.893 43 H 0.093 0.907 44 H 0.118 0.882 45 H 0.115 0.885 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.310 7.006 0.779 12.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.076 4.076 3 N -0.289 5.289 4 C -0.001 4.001 5 N -0.169 5.169 6 N -0.185 5.185 7 C -0.002 4.002 8 C 0.034 3.966 9 H 0.097 0.903 10 N -0.357 5.357 11 C 0.321 3.679 12 O -0.468 6.468 13 C 0.032 3.968 14 H 0.087 0.913 15 C -0.551 4.551 16 H 0.077 0.923 17 C -0.167 4.167 18 N -0.542 5.542 19 Si 0.781 3.219 20 H -0.188 1.188 21 H -0.198 1.198 22 H -0.219 1.219 23 C -0.039 4.039 24 C -0.129 4.129 25 C -0.154 4.154 26 C -0.163 4.163 27 C -0.149 4.149 28 C -0.161 4.161 29 C -0.164 4.164 30 C -0.071 4.071 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.106 0.894 34 H 0.091 0.909 35 H 0.118 0.882 36 H 0.256 0.744 37 H 0.075 0.925 38 H 0.117 0.883 39 H 0.153 0.847 40 H 0.162 0.838 41 H 0.155 0.845 42 H 0.125 0.875 43 H 0.112 0.888 44 H 0.137 0.863 45 H 0.133 0.867 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -10.966 6.293 0.202 12.645 hybrid contribution 1.309 0.025 0.620 1.449 sum -9.657 6.318 0.823 11.569 Atomic orbital electron populations 1.20241 0.81200 1.04915 1.04894 1.25255 0.99922 0.85140 0.97328 1.70214 1.00379 1.31125 1.27225 1.25136 0.96008 0.84017 0.94950 1.50150 1.05416 1.06469 1.54915 1.77888 0.87474 1.24112 1.29024 1.22311 0.79316 0.94701 1.03835 1.21042 0.82208 0.91889 1.01443 0.90336 1.45693 1.22002 1.45607 1.22429 1.21496 0.86451 0.77972 0.81992 1.90591 1.61399 1.65806 1.28985 1.18010 0.90171 0.94470 0.94100 0.91317 1.20785 1.06753 1.02513 1.25078 0.92314 1.25599 0.99242 0.96866 0.95039 1.70027 1.32808 1.22201 1.29196 0.85544 0.78448 0.79587 0.78325 1.18805 1.19758 1.21932 1.20153 0.94868 0.93760 0.95115 1.20872 0.99729 0.99095 0.93175 1.21334 1.00992 0.94509 0.98599 1.21263 1.02250 0.94818 0.97970 1.21299 1.00482 1.00169 0.92999 1.21147 1.02455 0.93726 0.98780 1.22040 1.00059 0.93598 1.00680 1.20565 0.84345 0.95519 1.06638 0.88359 0.88321 0.89361 0.90876 0.88208 0.74407 0.92451 0.88312 0.84739 0.83764 0.84487 0.87514 0.88828 0.86335 0.86655 0.84588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.95 10.51 71.24 0.75 -0.20 16 2 C 0.21 5.74 8.15 138.48 1.13 6.87 16 3 N -0.56 -15.86 11.18 -179.31 -2.01 -17.86 16 4 C 0.27 7.14 7.72 138.36 1.07 8.21 16 5 N -0.38 -11.28 4.04 -338.34 -1.37 -12.64 16 6 N -0.36 -11.51 12.74 -51.08 -0.65 -12.16 16 7 C 0.12 3.47 6.87 86.52 0.59 4.07 16 8 C 0.14 3.69 2.47 45.15 0.11 3.80 16 9 H 0.08 2.39 7.55 -2.39 -0.02 2.37 16 10 N -0.71 -22.05 4.98 -441.78 -2.20 -24.25 16 11 C 0.53 21.84 7.01 87.66 0.61 22.45 16 12 O -0.59 -27.17 15.08 -3.03 -0.05 -27.21 16 13 C 0.05 2.45 2.38 -13.03 -0.03 2.42 16 14 H 0.07 3.38 7.13 -2.39 -0.02 3.36 16 15 C -0.51 -24.21 7.47 25.60 0.19 -24.02 16 16 H 0.06 2.79 7.82 -2.91 -0.02 2.76 16 17 C 0.03 1.66 5.45 84.65 0.46 2.12 16 18 N -0.91 -46.26 12.84 21.45 0.28 -45.99 16 19 Si 0.96 38.35 29.54 68.60 2.03 40.38 16 20 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 21 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 22 H -0.29 -12.22 7.11 99.48 0.71 -11.51 16 23 C -0.04 -1.75 4.30 -19.86 -0.09 -1.84 16 24 C -0.11 -4.87 8.31 22.27 0.18 -4.68 16 25 C -0.14 -5.09 10.05 22.27 0.22 -4.86 16 26 C -0.15 -4.96 10.05 22.27 0.22 -4.74 16 27 C -0.13 -4.82 10.05 22.27 0.22 -4.59 16 28 C -0.14 -6.18 9.67 22.27 0.22 -5.96 16 29 C -0.13 -2.14 5.43 30.79 0.17 -1.97 16 30 C -0.03 -0.51 6.33 30.06 0.19 -0.32 16 31 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.10 1.45 8.14 -2.39 -0.02 1.44 16 33 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 36 H 0.42 11.93 8.49 -92.71 -0.79 11.14 16 37 H 0.27 13.03 8.31 -92.71 -0.77 12.26 16 38 H 0.10 4.44 7.89 -2.91 -0.02 4.42 16 39 H 0.13 4.13 8.06 -2.91 -0.02 4.10 16 40 H 0.14 3.77 8.06 -2.91 -0.02 3.75 16 41 H 0.14 4.07 8.06 -2.91 -0.02 4.05 16 42 H 0.11 4.55 7.96 -2.91 -0.02 4.53 16 43 H 0.09 1.39 8.12 -2.39 -0.02 1.37 16 44 H 0.12 1.69 8.14 -2.38 -0.02 1.67 16 45 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.14 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -68.07 386.50 2.48 -65.59 By element: Atomic # 1 Polarization: 37.18 SS G_CDS: 0.21 Total: 37.40 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: 6.23 Total: -3.25 kcal Atomic # 7 Polarization: -106.96 SS G_CDS: -5.95 Total: -112.90 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -0.05 Total: -27.21 kcal Atomic # 14 Polarization: 38.35 SS G_CDS: 2.03 Total: 40.38 kcal Total: -68.07 2.48 -65.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001435021652.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.900 kcal (2) G-P(sol) polarization free energy of solvation -68.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds