Wall clock time and date at job start Tue Mar 31 2020 22:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38285 * 119.92811 * 2 1 4 4 C 1.38101 * 120.07641 * 179.97438 * 3 2 1 5 5 C 1.38906 * 119.92556 * 359.97438 * 4 3 2 6 6 N 1.39789 * 120.07506 * 179.97438 * 5 4 3 7 7 C 1.46502 * 119.99999 * 187.87927 * 6 5 4 8 8 C 1.50691 * 109.47220 * 262.11917 * 7 6 5 9 9 H 1.08001 * 120.00534 * 0.02562 * 8 7 6 10 10 C 1.37881 * 119.99988 * 179.97438 * 8 7 6 11 11 N 1.31518 * 119.99824 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 120.00202 * 180.02562 * 10 8 7 13 13 H 1.48508 * 109.46975 * 0.02562 * 12 10 8 14 14 H 1.48497 * 109.47122 * 120.00275 * 12 10 8 15 15 H 1.48500 * 109.47005 * 240.00443 * 12 10 8 16 16 C 1.34771 * 119.99860 * 7.88516 * 6 5 4 17 17 O 1.21561 * 120.00319 * 1.70079 * 16 6 5 18 18 C 1.47870 * 119.99951 * 181.70370 * 16 6 5 19 19 C 1.33791 * 125.55708 * 169.89585 * 18 16 6 20 20 C 1.50980 * 130.86370 * 0.82570 * 19 18 16 21 21 C 1.53848 * 106.40060 * 156.10002 * 20 19 18 22 22 C 1.52651 * 110.20342 * 53.14749 * 21 20 19 23 23 N 1.46648 * 111.71861 * 298.90215 * 22 21 20 24 24 C 1.30370 * 119.16035 * 33.91330 * 23 22 21 25 25 N 1.37118 * 131.39089 * 176.44492 * 24 23 22 26 26 N 1.38672 * 125.55570 * 349.86886 * 18 16 6 27 27 C 1.38909 * 119.85320 * 0.25822 * 5 4 3 28 28 C 1.38110 * 119.92358 * 359.48841 * 27 5 4 29 29 H 1.09000 * 109.47635 * 89.99995 * 1 2 3 30 30 H 1.09001 * 109.47138 * 210.00048 * 1 2 3 31 31 H 1.09001 * 109.47328 * 329.99923 * 1 2 3 32 32 H 1.08003 * 119.96058 * 359.95818 * 3 2 1 33 33 H 1.08000 * 120.03940 * 180.02562 * 4 3 2 34 34 H 1.09000 * 109.46910 * 22.12495 * 7 6 5 35 35 H 1.08998 * 109.46854 * 142.11584 * 7 6 5 36 36 H 0.96995 * 119.99894 * 179.97438 * 11 10 8 37 37 H 1.09000 * 110.05899 * 275.32014 * 20 19 18 38 38 H 1.08990 * 110.06298 * 36.88139 * 20 19 18 39 39 H 1.09003 * 109.34846 * 173.36899 * 21 20 19 40 40 H 1.08999 * 109.35255 * 292.92079 * 21 20 19 41 41 H 1.09000 * 109.03025 * 178.32483 * 22 21 20 42 42 H 1.09003 * 108.97379 * 59.44019 * 22 21 20 43 43 H 0.97003 * 126.22423 * 2.56107 * 25 24 23 44 44 H 0.97000 * 125.32729 * 0.26823 * 26 18 16 45 45 H 1.07998 * 120.04211 * 179.71892 * 27 5 4 46 46 H 1.07996 * 119.96520 * 180.26050 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5779 1.2020 0.0005 5 6 4.2740 0.0000 0.0016 6 7 5.6719 -0.0001 0.0016 7 6 6.4043 -1.2570 -0.1712 8 6 6.8242 -1.7832 1.1770 9 1 6.5705 -1.2363 2.0731 10 6 7.5314 -2.9634 1.2667 11 7 7.8400 -3.6296 0.1756 12 14 8.0513 -3.6161 2.9380 13 1 7.5842 -2.6879 3.9990 14 1 7.4509 -4.9569 3.1544 15 1 9.5316 -3.7224 2.9893 16 6 6.3457 1.1562 0.1607 17 8 5.7384 2.1947 0.3351 18 6 7.8239 1.1617 0.1230 19 6 8.5970 2.2526 0.0763 20 6 8.2368 3.7188 0.0656 21 6 9.4647 4.4718 0.6059 22 6 10.7128 4.0771 -0.1794 23 7 10.9992 2.6439 -0.0589 24 6 10.0069 1.8036 0.0356 25 7 9.9812 0.4339 0.0929 26 7 8.6349 0.0368 0.1309 27 6 3.5779 -1.2021 -0.0033 28 6 2.1968 -1.1986 0.0015 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6551 2.1327 -0.0007 33 1 4.1161 2.1384 0.0010 34 1 5.7615 -1.9875 -0.6623 35 1 7.2884 -1.0810 -0.7840 36 1 8.3378 -4.4597 0.2386 37 1 8.0176 4.0425 -0.9519 38 1 7.3757 3.8970 0.7095 39 1 9.3016 5.5452 0.5092 40 1 9.6065 4.2237 1.6578 41 1 11.5644 4.6428 0.1988 42 1 10.5623 4.3223 -1.2308 43 1 10.7528 -0.1539 0.1049 44 1 8.3212 -0.8806 0.1583 45 1 4.1160 -2.1385 -0.0070 46 1 1.6550 -2.1328 0.0019 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001442735147.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:55 Heat of formation + Delta-G solvation = 115.402618 kcal Electronic energy + Delta-G solvation = -30102.536911 eV Core-core repulsion = 26188.347462 eV Total energy + Delta-G solvation = -3914.189449 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.07129 -39.79743 -38.07036 -36.59962 -35.66294 -33.46809 -32.68008 -31.52411 -30.53494 -29.89521 -29.52092 -28.01349 -26.40565 -24.72811 -23.96064 -23.12644 -22.23520 -21.95723 -20.67727 -19.00401 -18.45680 -17.57775 -17.16970 -16.96775 -16.43003 -15.39168 -15.16546 -15.06966 -14.85573 -14.65197 -14.42978 -14.08635 -13.67393 -13.52484 -13.36290 -13.26127 -13.12412 -12.88661 -12.80816 -12.61198 -12.04657 -12.01709 -11.89564 -11.60013 -11.46603 -11.30936 -11.13902 -10.98665 -10.81680 -10.70098 -10.55021 -10.39007 -10.03802 -9.42322 -9.22204 -9.05893 -8.80927 -8.50789 -8.37082 -7.37392 -6.72867 -6.54084 -4.87085 1.30629 1.84559 1.94110 2.38871 2.94283 3.05273 3.09051 3.16697 3.30360 3.65491 3.92988 4.26710 4.33891 4.59201 4.70803 5.08849 5.18168 5.23749 5.37022 5.43277 5.44124 5.50686 5.54956 5.70586 5.71334 5.79960 5.90198 5.98684 5.99959 6.07217 6.09845 6.23218 6.27255 6.32451 6.41988 6.49797 6.53101 6.57817 6.61579 6.74953 6.81005 6.97802 7.03827 7.24172 7.26191 7.35000 7.57978 7.67530 7.76777 8.25547 8.34227 8.41055 8.79518 8.85608 10.29682 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008606 B = 0.004976 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3252.891960 B = 5625.515314 C = 8378.948115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.125 4.125 3 C -0.105 4.105 4 C -0.167 4.167 5 C 0.161 3.839 6 N -0.528 5.528 7 C 0.204 3.796 8 C -0.561 4.561 9 H 0.075 0.925 10 C 0.069 3.931 11 N -0.878 5.878 12 Si 0.903 3.097 13 H -0.267 1.267 14 H -0.275 1.275 15 H -0.277 1.277 16 C 0.584 3.416 17 O -0.512 6.512 18 C 0.143 3.857 19 C -0.240 4.240 20 C -0.033 4.033 21 C -0.146 4.146 22 C 0.084 3.916 23 N -0.638 5.638 24 C 0.427 3.573 25 N -0.500 5.500 26 N -0.484 5.484 27 C -0.140 4.140 28 C -0.102 4.102 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.117 0.883 33 H 0.176 0.824 34 H 0.065 0.935 35 H 0.051 0.949 36 H 0.276 0.724 37 H 0.068 0.932 38 H 0.085 0.915 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.070 0.930 42 H 0.049 0.951 43 H 0.443 0.557 44 H 0.470 0.530 45 H 0.137 0.863 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.206 5.948 -1.701 8.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.126 4.126 3 C -0.123 4.123 4 C -0.186 4.186 5 C 0.066 3.934 6 N -0.247 5.247 7 C 0.084 3.916 8 C -0.600 4.600 9 H 0.093 0.907 10 C -0.138 4.138 11 N -0.514 5.514 12 Si 0.729 3.271 13 H -0.191 1.191 14 H -0.201 1.201 15 H -0.202 1.202 16 C 0.372 3.628 17 O -0.389 6.389 18 C 0.025 3.975 19 C -0.259 4.259 20 C -0.071 4.071 21 C -0.185 4.185 22 C -0.046 4.046 23 N -0.374 5.374 24 C 0.154 3.846 25 N -0.232 5.232 26 N -0.227 5.227 27 C -0.160 4.160 28 C -0.121 4.121 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.135 0.865 33 H 0.193 0.807 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.103 0.897 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.067 0.933 43 H 0.289 0.711 44 H 0.340 0.660 45 H 0.155 0.845 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.384 6.016 -1.713 7.638 hybrid contribution -0.157 -1.326 0.979 1.655 sum -4.540 4.690 -0.735 6.569 Atomic orbital electron populations 1.20683 0.91895 1.02082 1.01587 1.19828 0.95594 0.93465 1.03738 1.20908 0.93850 0.96983 1.00597 1.22543 0.94386 0.99816 1.01891 1.17966 0.81929 0.94530 0.98983 1.45771 1.04632 1.09530 1.64734 1.20154 0.92790 0.80222 0.98454 1.21587 1.37229 1.08351 0.92803 0.90676 1.25075 0.95059 0.95600 0.98097 1.69925 1.37307 1.16385 1.27742 0.86304 0.78655 0.79345 0.82822 1.19083 1.20062 1.20249 1.17535 0.84993 0.83250 0.76988 1.90425 1.66300 1.32644 1.49564 1.19487 0.89846 0.87548 1.00644 1.21304 0.92404 0.95340 1.16893 1.20086 0.97659 0.88059 1.01270 1.22018 0.96162 0.99732 1.00544 1.21603 0.95813 0.88782 0.98443 1.72196 1.27464 1.01195 1.36592 1.19956 0.89998 0.83794 0.90847 1.43341 0.98488 1.03771 1.77611 1.47115 0.91690 1.09233 1.74663 1.21076 0.94157 0.97423 1.03382 1.20745 0.93345 0.97229 1.00788 0.91900 0.92109 0.92119 0.86480 0.80733 0.91760 0.93209 0.91397 0.91371 0.89681 0.91555 0.91989 0.91152 0.93313 0.71059 0.66037 0.84478 0.86317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 10.01 36.00 0.36 -0.77 16 2 C -0.13 -1.79 5.88 -104.59 -0.62 -2.41 16 3 C -0.10 -1.59 9.69 -39.61 -0.38 -1.97 16 4 C -0.17 -2.96 9.00 -39.38 -0.35 -3.32 16 5 C 0.16 3.07 6.49 -83.73 -0.54 2.52 16 6 N -0.53 -10.56 2.70 -115.80 -0.31 -10.88 16 7 C 0.20 4.27 4.22 -5.20 -0.02 4.25 16 8 C -0.56 -12.63 7.28 -34.44 -0.25 -12.88 16 9 H 0.08 1.81 7.81 -52.49 -0.41 1.40 16 10 C 0.07 1.55 5.04 -17.82 -0.09 1.46 16 11 N -0.88 -20.36 13.29 55.43 0.74 -19.62 16 12 Si 0.90 18.43 29.54 -169.99 -5.02 13.40 16 13 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 14 H -0.28 -5.63 7.11 56.52 0.40 -5.22 16 15 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 16 C 0.58 11.72 7.53 -12.32 -0.09 11.63 16 17 O -0.51 -10.22 11.76 5.31 0.06 -10.16 16 18 C 0.14 2.82 6.59 -82.39 -0.54 2.27 16 19 C -0.24 -4.49 6.06 -102.03 -0.62 -5.11 16 20 C -0.03 -0.52 5.85 -27.30 -0.16 -0.68 16 21 C -0.15 -2.10 5.96 -26.47 -0.16 -2.25 16 22 C 0.08 1.30 6.93 -4.14 -0.03 1.27 16 23 N -0.64 -11.75 11.06 -58.71 -0.65 -12.40 16 24 C 0.43 8.01 8.35 -154.85 -1.29 6.72 16 25 N -0.50 -8.96 7.49 32.36 0.24 -8.71 16 26 N -0.48 -9.47 6.11 33.19 0.20 -9.27 16 27 C -0.14 -2.49 9.16 -39.38 -0.36 -2.85 16 28 C -0.10 -1.56 9.69 -39.61 -0.38 -1.94 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 31 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 32 H 0.12 1.49 8.06 -52.48 -0.42 1.06 16 33 H 0.18 3.23 4.63 -55.73 -0.26 2.97 16 34 H 0.06 1.38 6.11 -51.93 -0.32 1.06 16 35 H 0.05 1.08 5.16 -51.93 -0.27 0.81 16 36 H 0.28 6.12 8.31 -40.82 -0.34 5.78 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.08 1.39 7.09 -51.93 -0.37 1.02 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.44 6.79 8.96 -182.35 -1.63 5.15 16 44 H 0.47 9.67 3.20 -182.36 -0.58 9.09 16 45 H 0.14 2.52 6.20 -52.49 -0.33 2.20 16 46 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 365.61 15.07 5.51 5.51 Total: -1.00 -25.02 365.61 -12.29 -37.31 By element: Atomic # 1 Polarization: 26.38 SS G_CDS: -7.52 Total: 18.86 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -5.54 Total: -4.05 kcal Atomic # 7 Polarization: -61.10 SS G_CDS: 0.22 Total: -60.88 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.06 Total: -10.16 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.02 Total: 13.40 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -25.02 -12.29 -37.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001442735147.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.714 kcal (2) G-P(sol) polarization free energy of solvation -25.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds