Wall clock time and date at job start Tue Mar 31 2020 22:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38285 * 119.92811 * 2 1 4 4 C 1.38101 * 120.07641 * 179.97438 * 3 2 1 5 5 C 1.38906 * 119.92556 * 359.97438 * 4 3 2 6 6 N 1.39789 * 120.07506 * 179.97438 * 5 4 3 7 7 C 1.46502 * 119.99999 * 187.87927 * 6 5 4 8 8 C 1.50691 * 109.47220 * 262.11917 * 7 6 5 9 9 H 1.08001 * 120.00534 * 0.02562 * 8 7 6 10 10 C 1.37881 * 119.99988 * 179.97438 * 8 7 6 11 11 N 1.31518 * 119.99824 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 120.00202 * 180.02562 * 10 8 7 13 13 H 1.48508 * 109.46975 * 0.02562 * 12 10 8 14 14 H 1.48497 * 109.47122 * 120.00275 * 12 10 8 15 15 H 1.48500 * 109.47005 * 240.00443 * 12 10 8 16 16 C 1.34771 * 119.99860 * 7.88516 * 6 5 4 17 17 O 1.21561 * 120.00319 * 1.70079 * 16 6 5 18 18 C 1.47870 * 119.99951 * 181.70370 * 16 6 5 19 19 C 1.33791 * 125.55708 * 169.89585 * 18 16 6 20 20 C 1.50980 * 130.86370 * 0.82570 * 19 18 16 21 21 C 1.53848 * 106.40060 * 156.10002 * 20 19 18 22 22 C 1.52651 * 110.20342 * 53.14749 * 21 20 19 23 23 N 1.46648 * 111.71861 * 298.90215 * 22 21 20 24 24 C 1.30370 * 119.16035 * 33.91330 * 23 22 21 25 25 N 1.37118 * 131.39089 * 176.44492 * 24 23 22 26 26 N 1.38672 * 125.55570 * 349.86886 * 18 16 6 27 27 C 1.38909 * 119.85320 * 0.25822 * 5 4 3 28 28 C 1.38110 * 119.92358 * 359.48841 * 27 5 4 29 29 H 1.09000 * 109.47635 * 89.99995 * 1 2 3 30 30 H 1.09001 * 109.47138 * 210.00048 * 1 2 3 31 31 H 1.09001 * 109.47328 * 329.99923 * 1 2 3 32 32 H 1.08003 * 119.96058 * 359.95818 * 3 2 1 33 33 H 1.08000 * 120.03940 * 180.02562 * 4 3 2 34 34 H 1.09000 * 109.46910 * 22.12495 * 7 6 5 35 35 H 1.08998 * 109.46854 * 142.11584 * 7 6 5 36 36 H 0.96995 * 119.99894 * 179.97438 * 11 10 8 37 37 H 1.09000 * 110.05899 * 275.32014 * 20 19 18 38 38 H 1.08990 * 110.06298 * 36.88139 * 20 19 18 39 39 H 1.09003 * 109.34846 * 173.36899 * 21 20 19 40 40 H 1.08999 * 109.35255 * 292.92079 * 21 20 19 41 41 H 1.09000 * 109.03025 * 178.32483 * 22 21 20 42 42 H 1.09003 * 108.97379 * 59.44019 * 22 21 20 43 43 H 0.97003 * 126.22423 * 2.56107 * 25 24 23 44 44 H 0.97000 * 125.32729 * 0.26823 * 26 18 16 45 45 H 1.07998 * 120.04211 * 179.71892 * 27 5 4 46 46 H 1.07996 * 119.96520 * 180.26050 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5779 1.2020 0.0005 5 6 4.2740 0.0000 0.0016 6 7 5.6719 -0.0001 0.0016 7 6 6.4043 -1.2570 -0.1712 8 6 6.8242 -1.7832 1.1770 9 1 6.5705 -1.2363 2.0731 10 6 7.5314 -2.9634 1.2667 11 7 7.8400 -3.6296 0.1756 12 14 8.0513 -3.6161 2.9380 13 1 7.5842 -2.6879 3.9990 14 1 7.4509 -4.9569 3.1544 15 1 9.5316 -3.7224 2.9893 16 6 6.3457 1.1562 0.1607 17 8 5.7384 2.1947 0.3351 18 6 7.8239 1.1617 0.1230 19 6 8.5970 2.2526 0.0763 20 6 8.2368 3.7188 0.0656 21 6 9.4647 4.4718 0.6059 22 6 10.7128 4.0771 -0.1794 23 7 10.9992 2.6439 -0.0589 24 6 10.0069 1.8036 0.0356 25 7 9.9812 0.4339 0.0929 26 7 8.6349 0.0368 0.1309 27 6 3.5779 -1.2021 -0.0033 28 6 2.1968 -1.1986 0.0015 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6551 2.1327 -0.0007 33 1 4.1161 2.1384 0.0010 34 1 5.7615 -1.9875 -0.6623 35 1 7.2884 -1.0810 -0.7840 36 1 8.3378 -4.4597 0.2386 37 1 8.0176 4.0425 -0.9519 38 1 7.3757 3.8970 0.7095 39 1 9.3016 5.5452 0.5092 40 1 9.6065 4.2237 1.6578 41 1 11.5644 4.6428 0.1988 42 1 10.5623 4.3223 -1.2308 43 1 10.7528 -0.1539 0.1049 44 1 8.3212 -0.8806 0.1583 45 1 4.1160 -2.1385 -0.0070 46 1 1.6550 -2.1328 0.0019 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001442735147.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:54 Heat of formation + Delta-G solvation = 103.285684 kcal Electronic energy + Delta-G solvation = -30103.062341 eV Core-core repulsion = 26188.347462 eV Total energy + Delta-G solvation = -3914.714879 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.54033 -41.20380 -39.40671 -38.01749 -37.10003 -35.09387 -34.12501 -32.78160 -31.82304 -31.28280 -30.88735 -29.62629 -27.60728 -26.13430 -25.55530 -24.51741 -23.54571 -23.28203 -21.98471 -20.46348 -19.81326 -19.10826 -18.85856 -18.39997 -17.91052 -16.85290 -16.56769 -16.55417 -16.33132 -16.05705 -15.72579 -15.49137 -15.02180 -14.76643 -14.66045 -14.57379 -14.45929 -14.31557 -14.15256 -13.92403 -13.45439 -13.31850 -13.01809 -12.98442 -12.92029 -12.71784 -12.61360 -12.37501 -12.33472 -12.01770 -11.96123 -11.86836 -11.44826 -10.91070 -10.88025 -10.58353 -10.22174 -9.79610 -9.74864 -8.78298 -8.44771 -7.98443 -6.66893 -0.14136 0.55506 0.60125 0.95845 1.29913 1.36964 1.44883 1.69113 1.81988 2.17306 2.25224 2.79838 2.90490 2.97503 3.24395 3.72097 4.02543 4.08910 4.11692 4.20011 4.24715 4.30047 4.33270 4.39736 4.46615 4.59288 4.68970 4.76864 4.82069 4.85986 4.93098 4.94733 5.00860 5.05970 5.18866 5.20820 5.24496 5.27567 5.37332 5.39283 5.45327 5.54310 5.60407 5.66659 5.79598 5.86340 6.17268 6.24991 6.30018 6.49932 6.85526 6.89324 7.06709 7.40519 8.54150 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008606 B = 0.004976 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3252.891960 B = 5625.515314 C = 8378.948115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.117 4.117 3 C -0.104 4.104 4 C -0.180 4.180 5 C 0.128 3.872 6 N -0.531 5.531 7 C 0.218 3.782 8 C -0.560 4.560 9 H 0.055 0.945 10 C 0.043 3.957 11 N -0.896 5.896 12 Si 0.949 3.051 13 H -0.278 1.278 14 H -0.271 1.271 15 H -0.271 1.271 16 C 0.577 3.423 17 O -0.518 6.518 18 C 0.120 3.880 19 C -0.237 4.237 20 C -0.034 4.034 21 C -0.137 4.137 22 C 0.076 3.924 23 N -0.649 5.649 24 C 0.415 3.585 25 N -0.496 5.496 26 N -0.496 5.496 27 C -0.155 4.155 28 C -0.103 4.103 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.146 0.854 33 H 0.166 0.834 34 H 0.054 0.946 35 H 0.045 0.955 36 H 0.280 0.720 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.100 0.900 40 H 0.051 0.949 41 H 0.088 0.912 42 H 0.058 0.942 43 H 0.451 0.549 44 H 0.465 0.535 45 H 0.122 0.878 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.476 6.968 -1.567 9.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.117 4.117 3 C -0.123 4.123 4 C -0.199 4.199 5 C 0.034 3.966 6 N -0.250 5.250 7 C 0.097 3.903 8 C -0.599 4.599 9 H 0.073 0.927 10 C -0.162 4.162 11 N -0.532 5.532 12 Si 0.774 3.226 13 H -0.203 1.203 14 H -0.196 1.196 15 H -0.197 1.197 16 C 0.366 3.634 17 O -0.396 6.396 18 C 0.003 3.997 19 C -0.257 4.257 20 C -0.072 4.072 21 C -0.175 4.175 22 C -0.054 4.054 23 N -0.385 5.385 24 C 0.142 3.858 25 N -0.230 5.230 26 N -0.238 5.238 27 C -0.175 4.175 28 C -0.122 4.122 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.163 0.837 33 H 0.182 0.818 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.118 0.882 40 H 0.069 0.931 41 H 0.106 0.894 42 H 0.076 0.924 43 H 0.300 0.700 44 H 0.333 0.667 45 H 0.140 0.860 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -5.660 7.050 -1.585 9.179 hybrid contribution 0.184 -1.570 0.910 1.823 sum -5.475 5.481 -0.676 7.776 Atomic orbital electron populations 1.20759 0.88696 1.03542 1.03029 1.20284 0.97822 0.92508 1.01127 1.21251 0.92851 0.98768 0.99409 1.22531 0.95686 0.98834 1.02846 1.18269 0.81522 0.95653 1.01201 1.45715 1.05279 1.09011 1.64951 1.19877 0.92375 0.80530 0.97517 1.21486 1.37414 1.08391 0.92607 0.92691 1.25502 0.94976 0.95638 1.00083 1.69963 1.37780 1.16724 1.28736 0.85617 0.78532 0.78590 0.79888 1.20280 1.19633 1.19650 1.17661 0.85289 0.83315 0.77135 1.90412 1.66500 1.32599 1.50087 1.19605 0.89882 0.88043 1.02139 1.21775 0.92392 0.96431 1.15068 1.20196 0.98372 0.86658 1.01955 1.21968 0.94652 1.01480 0.99426 1.21800 0.97077 0.87186 0.99347 1.72172 1.27861 1.02794 1.35701 1.20096 0.90127 0.84062 0.91564 1.43352 0.98103 1.03923 1.77660 1.46967 0.92428 1.08980 1.75443 1.21092 0.95441 0.96370 1.04609 1.21084 0.92326 0.99018 0.99723 0.90297 0.90800 0.90620 0.83677 0.81777 0.92760 0.93743 0.91057 0.90232 0.90166 0.88160 0.93051 0.89376 0.92376 0.70026 0.66691 0.86046 0.83778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.81 10.01 71.23 0.71 -1.10 16 2 C -0.12 -3.05 5.88 -19.84 -0.12 -3.16 16 3 C -0.10 -2.99 9.69 22.25 0.22 -2.77 16 4 C -0.18 -6.41 9.00 22.40 0.20 -6.21 16 5 C 0.13 5.01 6.49 38.19 0.25 5.26 16 6 N -0.53 -22.24 2.70 -638.54 -1.73 -23.96 16 7 C 0.22 9.57 4.22 85.63 0.36 9.94 16 8 C -0.56 -26.17 7.28 25.60 0.19 -25.99 16 9 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16 10 C 0.04 1.98 5.04 84.66 0.43 2.41 16 11 N -0.90 -42.19 13.29 21.45 0.28 -41.91 16 12 Si 0.95 38.13 29.54 68.60 2.03 40.16 16 13 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 14 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 15 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 16 C 0.58 24.09 7.53 86.79 0.65 24.74 16 17 O -0.52 -21.28 11.76 -3.91 -0.05 -21.33 16 18 C 0.12 4.89 6.59 39.60 0.26 5.15 16 19 C -0.24 -8.92 6.06 -18.19 -0.11 -9.03 16 20 C -0.03 -1.06 5.85 30.22 0.18 -0.88 16 21 C -0.14 -3.65 5.96 30.76 0.18 -3.47 16 22 C 0.08 2.19 6.93 86.24 0.60 2.78 16 23 N -0.65 -23.24 11.06 -339.67 -3.76 -27.00 16 24 C 0.41 15.53 8.35 136.68 1.14 16.67 16 25 N -0.50 -18.08 7.49 -51.52 -0.39 -18.47 16 26 N -0.50 -20.07 6.11 -48.91 -0.30 -20.37 16 27 C -0.15 -5.61 9.16 22.40 0.21 -5.41 16 28 C -0.10 -3.01 9.69 22.25 0.22 -2.79 16 29 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.07 1.13 8.08 -2.39 -0.02 1.11 16 31 H 0.07 1.13 8.08 -2.39 -0.02 1.11 16 32 H 0.15 3.27 8.06 -2.91 -0.02 3.24 16 33 H 0.17 6.20 4.63 -54.31 -0.25 5.94 16 34 H 0.05 2.47 6.11 -2.39 -0.01 2.45 16 35 H 0.05 2.03 5.16 -2.39 -0.01 2.01 16 36 H 0.28 12.47 8.31 -92.71 -0.77 11.70 16 37 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.08 2.59 7.09 -2.39 -0.02 2.58 16 39 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.45 14.08 8.96 -213.11 -1.91 12.17 16 44 H 0.47 19.92 3.20 -213.12 -0.68 19.24 16 45 H 0.12 4.70 6.20 -2.91 -0.02 4.68 16 46 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 Total: -1.00 -54.34 365.61 -0.12 -54.47 By element: Atomic # 1 Polarization: 54.05 SS G_CDS: -1.78 Total: 52.27 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: 5.56 Total: 6.15 kcal Atomic # 7 Polarization: -125.83 SS G_CDS: -5.88 Total: -131.71 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.05 Total: -21.33 kcal Atomic # 14 Polarization: 38.13 SS G_CDS: 2.03 Total: 40.16 kcal Total: -54.34 -0.12 -54.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001442735147.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.753 kcal (2) G-P(sol) polarization free energy of solvation -54.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds