Wall clock time and date at job start Tue Mar 31 2020 23:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38568 * 119.97063 * 2 1 4 4 C 1.38819 * 118.07134 * 180.02562 * 3 2 1 5 5 C 1.39721 * 117.89886 * 359.97438 * 4 3 2 6 6 C 1.48155 * 120.18118 * 179.97438 * 5 4 3 7 7 O 1.21507 * 120.00127 * 359.97438 * 6 5 4 8 8 N 1.34781 * 119.99417 * 179.97438 * 6 5 4 9 9 C 1.46504 * 119.99187 * 179.97438 * 8 6 5 10 10 C 1.50704 * 109.46512 * 180.02562 * 9 8 6 11 11 C 1.38235 * 120.00277 * 269.72720 * 10 9 8 12 12 C 1.38236 * 120.00096 * 179.74531 * 11 10 9 13 13 C 1.38229 * 120.00069 * 0.53189 * 12 11 10 14 14 C 1.50698 * 120.00410 * 179.76883 * 13 12 11 15 15 C 1.52999 * 109.46828 * 269.97809 * 14 13 12 16 16 N 1.46506 * 109.46884 * 179.97438 * 15 14 13 17 17 C 1.36936 * 119.99869 * 180.02562 * 16 15 14 18 18 H 1.08005 * 120.00221 * 359.97438 * 17 16 15 19 19 C 1.38814 * 120.00203 * 180.02562 * 17 16 15 20 20 N 1.31621 * 119.99531 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00286 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47273 * 59.99643 * 21 19 17 23 23 H 1.48501 * 109.46900 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47069 * 299.99389 * 21 19 17 25 25 C 1.38235 * 119.99917 * 359.74685 * 13 12 11 26 26 C 1.38238 * 119.99839 * 90.00435 * 10 9 8 27 27 N 1.32780 * 119.63339 * 0.02562 * 5 4 3 28 28 N 1.28350 * 122.02809 * 0.02562 * 27 5 4 29 29 H 1.08989 * 109.47046 * 269.98045 * 1 2 3 30 30 H 1.09003 * 109.46799 * 29.97980 * 1 2 3 31 31 H 1.09006 * 109.47092 * 149.97641 * 1 2 3 32 32 H 1.07998 * 120.96440 * 359.97438 * 3 2 1 33 33 H 1.08000 * 121.05109 * 179.97438 * 4 3 2 34 34 H 0.96994 * 120.00291 * 0.02562 * 8 6 5 35 35 H 1.08995 * 109.47880 * 300.00107 * 9 8 6 36 36 H 1.08994 * 109.46915 * 60.00815 * 9 8 6 37 37 H 1.08003 * 119.99468 * 0.02562 * 11 10 9 38 38 H 1.08006 * 119.99743 * 180.29754 * 12 11 10 39 39 H 1.09003 * 109.46953 * 29.97345 * 14 13 12 40 40 H 1.08998 * 109.47521 * 149.97778 * 14 13 12 41 41 H 1.08993 * 109.47485 * 299.99412 * 15 14 13 42 42 H 1.09004 * 109.47299 * 60.00380 * 15 14 13 43 43 H 0.96993 * 119.99973 * 359.97438 * 16 15 14 44 44 H 0.96999 * 119.99810 * 180.02562 * 20 19 17 45 45 H 1.08001 * 120.00161 * 179.97438 * 25 13 12 46 46 H 1.07998 * 120.00001 * 0.02562 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1993 1.2004 0.0000 4 6 3.5867 1.1544 -0.0005 5 6 4.1992 -0.1014 -0.0005 6 6 5.6768 -0.2095 -0.0017 7 8 6.3594 0.7957 -0.0031 8 7 6.2636 -1.4228 -0.0011 9 6 7.7248 -1.5296 -0.0028 10 6 8.1221 -2.9833 -0.0024 11 6 8.3113 -3.6478 1.1949 12 6 8.6706 -4.9827 1.1953 13 6 8.8514 -5.6501 -0.0016 14 6 9.2482 -7.1039 -0.0013 15 6 10.7741 -7.2160 -0.0033 16 7 11.1598 -8.6294 -0.0023 17 6 12.4842 -8.9776 -0.0032 18 1 13.2443 -8.2104 -0.0051 19 6 12.8498 -10.3168 -0.0029 20 7 11.9234 -11.2518 -0.0012 21 14 14.6563 -10.7918 -0.0049 22 1 15.3146 -10.2399 1.2064 23 1 14.7789 -12.2718 -0.0035 24 1 15.3115 -10.2415 -1.2186 25 6 8.6679 -4.9841 -1.1990 26 6 8.3030 -3.6507 -1.1994 27 7 3.4496 -1.1974 -0.0005 28 7 2.1672 -1.1451 -0.0010 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6746 2.1444 -0.0004 33 1 4.1741 2.0607 -0.0010 34 1 5.7187 -2.2252 -0.0003 35 1 8.1236 -1.0446 -0.8937 36 1 8.1256 -1.0428 0.8862 37 1 8.1739 -3.1252 2.1300 38 1 8.8137 -5.5031 2.1308 39 1 8.8494 -7.5891 0.8896 40 1 8.8470 -7.5903 -0.8904 41 1 11.1730 -6.7309 -0.8940 42 1 11.1753 -6.7297 0.8860 43 1 10.4772 -9.3184 -0.0003 44 1 12.1788 -12.1875 -0.0006 45 1 8.8096 -5.5054 -2.1341 46 1 8.1599 -3.1302 -2.1348 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480715465.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:15 Heat of formation + Delta-G solvation = 48.242105 kcal Electronic energy + Delta-G solvation = -26600.086527 eV Core-core repulsion = 22682.984780 eV Total energy + Delta-G solvation = -3917.101748 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.75957 -40.03811 -39.23791 -35.91121 -34.91979 -34.54520 -33.64737 -32.78118 -30.94778 -30.91822 -29.41242 -28.26625 -26.03659 -25.33430 -23.90927 -23.30433 -22.71432 -21.65875 -21.41237 -20.47676 -18.94200 -18.04919 -17.15362 -16.40574 -16.26753 -16.18130 -15.82121 -15.71623 -15.20068 -14.96349 -14.80358 -14.62212 -14.06138 -13.81003 -13.69008 -13.53056 -13.51956 -13.30940 -13.25742 -13.01870 -12.72563 -12.53232 -12.33108 -12.05991 -11.20689 -11.19502 -11.08218 -10.88666 -10.85950 -10.68703 -10.59744 -10.57168 -10.34010 -10.32707 -10.08718 -9.69890 -9.48491 -8.91021 -8.83613 -8.55460 -6.91144 -5.74828 -3.03780 -0.12749 0.16814 1.19550 1.43826 2.14868 2.64232 3.09730 3.27766 3.45894 3.49845 3.51192 3.72641 3.81105 3.94786 4.09975 4.34642 4.37821 4.48475 4.61247 4.75979 4.80940 4.89147 4.99449 5.05623 5.06756 5.12541 5.22946 5.34988 5.39574 5.51856 5.54676 5.56164 5.62511 5.79192 5.87741 5.93501 5.95254 6.10845 6.22172 6.30368 6.47479 6.50707 6.63810 6.83535 6.95635 7.00888 7.04747 7.64460 7.71344 8.00175 8.44079 9.55034 10.12540 10.47573 11.48031 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.027209 B = 0.001492 C = 0.001438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.834530 B =18762.323270 C =19470.770903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.085 3.915 3 C -0.123 4.123 4 C -0.061 4.061 5 C 0.016 3.984 6 C 0.576 3.424 7 O -0.530 6.530 8 N -0.701 5.701 9 C 0.164 3.836 10 C -0.130 4.130 11 C -0.096 4.096 12 C -0.118 4.118 13 C -0.050 4.050 14 C -0.095 4.095 15 C 0.161 3.839 16 N -0.734 5.734 17 C -0.241 4.241 18 H 0.070 0.930 19 C -0.014 4.014 20 N -0.934 5.934 21 Si 0.908 3.092 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.118 4.118 26 C -0.096 4.096 27 N -0.204 5.204 28 N -0.240 5.240 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.159 0.841 33 H 0.164 0.836 34 H 0.415 0.585 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.121 0.879 38 H 0.125 0.875 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.020 0.980 42 H 0.020 0.980 43 H 0.384 0.616 44 H 0.256 0.744 45 H 0.125 0.875 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.124 28.383 0.025 37.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.058 4.058 3 C -0.152 4.152 4 C -0.090 4.090 5 C -0.130 4.130 6 C 0.358 3.642 7 O -0.406 6.406 8 N -0.352 5.352 9 C 0.042 3.958 10 C -0.130 4.130 11 C -0.115 4.115 12 C -0.136 4.136 13 C -0.051 4.051 14 C -0.132 4.132 15 C 0.033 3.967 16 N -0.378 5.378 17 C -0.372 4.372 18 H 0.088 0.912 19 C -0.210 4.210 20 N -0.583 5.583 21 Si 0.739 3.261 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.212 1.212 25 C -0.136 4.136 26 C -0.115 4.115 27 N -0.050 5.050 28 N -0.085 5.085 29 H 0.107 0.893 30 H 0.102 0.898 31 H 0.106 0.894 32 H 0.176 0.824 33 H 0.181 0.819 34 H 0.251 0.749 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.139 0.861 38 H 0.143 0.857 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.038 0.962 42 H 0.037 0.963 43 H 0.217 0.783 44 H 0.065 0.935 45 H 0.143 0.857 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -23.448 27.453 0.021 36.104 hybrid contribution 0.636 0.629 0.011 0.894 sum -22.812 28.082 0.032 36.180 Atomic orbital electron populations 1.20773 0.86856 1.04581 1.04113 1.23159 0.99538 0.90433 0.92641 1.22349 0.94238 1.00265 0.98368 1.22462 0.95106 0.99191 0.92262 1.22818 0.96366 0.92171 1.01642 1.17554 0.85216 0.84070 0.77321 1.90814 1.63529 1.36051 1.50169 1.46015 1.08097 1.08320 1.72774 1.20268 0.78945 0.93259 1.03347 1.19646 1.04710 0.94748 0.93923 1.21007 0.98783 0.94558 0.97144 1.21119 1.00035 0.94322 0.98135 1.20090 0.95560 0.96476 0.92946 1.20878 0.98300 0.90845 1.03227 1.20587 0.90076 0.87953 0.98041 1.42365 1.05302 1.00573 1.89608 1.19199 0.83864 0.91337 1.42777 0.91226 1.24745 0.97557 0.95683 1.03003 1.69653 1.31375 0.99502 1.57748 0.86250 0.84798 0.77171 0.77871 1.21256 1.21652 1.21250 1.21120 1.00003 0.94356 0.98129 1.21008 0.98781 0.94561 0.97148 1.73228 0.99890 1.26079 1.05794 1.73130 1.00777 1.24569 1.10000 0.89280 0.89836 0.89445 0.82376 0.81859 0.74881 0.90229 0.90222 0.86143 0.85664 0.90749 0.90749 0.96241 0.96253 0.78268 0.93467 0.85664 0.86143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.29 10.19 36.01 0.37 0.08 16 2 C 0.08 0.52 6.87 -82.32 -0.57 -0.04 16 3 C -0.12 -0.57 9.86 -39.24 -0.39 -0.96 16 4 C -0.06 -0.41 9.73 -38.81 -0.38 -0.79 16 5 C 0.02 0.15 6.83 -82.83 -0.57 -0.41 16 6 C 0.58 6.01 7.82 -12.19 -0.10 5.91 16 7 O -0.53 -6.68 16.39 5.36 0.09 -6.59 16 8 N -0.70 -6.64 5.54 -62.33 -0.35 -6.99 16 9 C 0.16 1.54 5.80 -5.19 -0.03 1.51 16 10 C -0.13 -1.36 5.25 -104.62 -0.55 -1.91 16 11 C -0.10 -1.06 9.70 -39.58 -0.38 -1.45 16 12 C -0.12 -1.51 9.70 -39.59 -0.38 -1.89 16 13 C -0.05 -0.70 5.13 -104.63 -0.54 -1.24 16 14 C -0.09 -1.55 5.46 -27.88 -0.15 -1.71 16 15 C 0.16 3.32 6.24 -4.04 -0.03 3.29 16 16 N -0.73 -19.02 5.60 -59.90 -0.34 -19.36 16 17 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 18 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 19 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 20 N -0.93 -28.55 13.06 55.49 0.72 -27.83 16 21 Si 0.91 22.66 29.55 -169.99 -5.02 17.64 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 C -0.12 -1.51 9.70 -39.58 -0.38 -1.89 16 26 C -0.10 -1.06 9.70 -39.58 -0.38 -1.45 16 27 N -0.20 -2.09 10.75 33.32 0.36 -1.73 16 28 N -0.24 -2.29 11.43 33.63 0.38 -1.91 16 29 H 0.09 0.16 8.14 -51.94 -0.42 -0.26 16 30 H 0.08 0.04 8.09 -51.93 -0.42 -0.38 16 31 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.16 0.15 8.06 -52.49 -0.42 -0.27 16 33 H 0.16 0.86 7.72 -52.49 -0.41 0.46 16 34 H 0.41 3.79 7.82 -40.82 -0.32 3.47 16 35 H 0.08 0.74 8.08 -51.93 -0.42 0.32 16 36 H 0.08 0.74 8.08 -51.93 -0.42 0.32 16 37 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 38 H 0.13 1.51 8.06 -52.48 -0.42 1.09 16 39 H 0.07 1.21 8.09 -51.93 -0.42 0.79 16 40 H 0.07 1.21 8.09 -51.93 -0.42 0.79 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.38 10.34 7.67 -40.82 -0.31 10.02 16 44 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 45 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 46 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 399.75 15.07 6.02 6.02 Total: -1.00 -34.62 399.75 -9.31 -43.93 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -6.49 Total: 7.29 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: -4.70 Total: -10.48 kcal Atomic # 7 Polarization: -58.60 SS G_CDS: 0.79 Total: -57.81 kcal Atomic # 8 Polarization: -6.68 SS G_CDS: 0.09 Total: -6.59 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.62 -9.31 -43.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480715465.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.173 kcal (2) G-P(sol) polarization free energy of solvation -34.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds