Wall clock time and date at job start Tue Mar 31 2020 23:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38568 * 119.97063 * 2 1 4 4 C 1.38819 * 118.07134 * 180.02562 * 3 2 1 5 5 C 1.39721 * 117.89886 * 359.97438 * 4 3 2 6 6 C 1.48155 * 120.18118 * 179.97438 * 5 4 3 7 7 O 1.21507 * 120.00127 * 359.97438 * 6 5 4 8 8 N 1.34781 * 119.99417 * 179.97438 * 6 5 4 9 9 C 1.46504 * 119.99187 * 179.97438 * 8 6 5 10 10 C 1.50704 * 109.46512 * 180.02562 * 9 8 6 11 11 C 1.38235 * 120.00277 * 269.72720 * 10 9 8 12 12 C 1.38236 * 120.00096 * 179.74531 * 11 10 9 13 13 C 1.38229 * 120.00069 * 0.53189 * 12 11 10 14 14 C 1.50698 * 120.00410 * 179.76883 * 13 12 11 15 15 C 1.52999 * 109.46828 * 269.97809 * 14 13 12 16 16 N 1.46506 * 109.46884 * 179.97438 * 15 14 13 17 17 C 1.36936 * 119.99869 * 180.02562 * 16 15 14 18 18 H 1.08005 * 120.00221 * 359.97438 * 17 16 15 19 19 C 1.38814 * 120.00203 * 180.02562 * 17 16 15 20 20 N 1.31621 * 119.99531 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00286 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47273 * 59.99643 * 21 19 17 23 23 H 1.48501 * 109.46900 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47069 * 299.99389 * 21 19 17 25 25 C 1.38235 * 119.99917 * 359.74685 * 13 12 11 26 26 C 1.38238 * 119.99839 * 90.00435 * 10 9 8 27 27 N 1.32780 * 119.63339 * 0.02562 * 5 4 3 28 28 N 1.28350 * 122.02809 * 0.02562 * 27 5 4 29 29 H 1.08989 * 109.47046 * 269.98045 * 1 2 3 30 30 H 1.09003 * 109.46799 * 29.97980 * 1 2 3 31 31 H 1.09006 * 109.47092 * 149.97641 * 1 2 3 32 32 H 1.07998 * 120.96440 * 359.97438 * 3 2 1 33 33 H 1.08000 * 121.05109 * 179.97438 * 4 3 2 34 34 H 0.96994 * 120.00291 * 0.02562 * 8 6 5 35 35 H 1.08995 * 109.47880 * 300.00107 * 9 8 6 36 36 H 1.08994 * 109.46915 * 60.00815 * 9 8 6 37 37 H 1.08003 * 119.99468 * 0.02562 * 11 10 9 38 38 H 1.08006 * 119.99743 * 180.29754 * 12 11 10 39 39 H 1.09003 * 109.46953 * 29.97345 * 14 13 12 40 40 H 1.08998 * 109.47521 * 149.97778 * 14 13 12 41 41 H 1.08993 * 109.47485 * 299.99412 * 15 14 13 42 42 H 1.09004 * 109.47299 * 60.00380 * 15 14 13 43 43 H 0.96993 * 119.99973 * 359.97438 * 16 15 14 44 44 H 0.96999 * 119.99810 * 180.02562 * 20 19 17 45 45 H 1.08001 * 120.00161 * 179.97438 * 25 13 12 46 46 H 1.07998 * 120.00001 * 0.02562 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1993 1.2004 0.0000 4 6 3.5867 1.1544 -0.0005 5 6 4.1992 -0.1014 -0.0005 6 6 5.6768 -0.2095 -0.0017 7 8 6.3594 0.7957 -0.0031 8 7 6.2636 -1.4228 -0.0011 9 6 7.7248 -1.5296 -0.0028 10 6 8.1221 -2.9833 -0.0024 11 6 8.3113 -3.6478 1.1949 12 6 8.6706 -4.9827 1.1953 13 6 8.8514 -5.6501 -0.0016 14 6 9.2482 -7.1039 -0.0013 15 6 10.7741 -7.2160 -0.0033 16 7 11.1598 -8.6294 -0.0023 17 6 12.4842 -8.9776 -0.0032 18 1 13.2443 -8.2104 -0.0051 19 6 12.8498 -10.3168 -0.0029 20 7 11.9234 -11.2518 -0.0012 21 14 14.6563 -10.7918 -0.0049 22 1 15.3146 -10.2399 1.2064 23 1 14.7789 -12.2718 -0.0035 24 1 15.3115 -10.2415 -1.2186 25 6 8.6679 -4.9841 -1.1990 26 6 8.3030 -3.6507 -1.1994 27 7 3.4496 -1.1974 -0.0005 28 7 2.1672 -1.1451 -0.0010 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6746 2.1444 -0.0004 33 1 4.1741 2.0607 -0.0010 34 1 5.7187 -2.2252 -0.0003 35 1 8.1236 -1.0446 -0.8937 36 1 8.1256 -1.0428 0.8862 37 1 8.1739 -3.1252 2.1300 38 1 8.8137 -5.5031 2.1308 39 1 8.8494 -7.5891 0.8896 40 1 8.8470 -7.5903 -0.8904 41 1 11.1730 -6.7309 -0.8940 42 1 11.1753 -6.7297 0.8860 43 1 10.4772 -9.3184 -0.0003 44 1 12.1788 -12.1875 -0.0006 45 1 8.8096 -5.5054 -2.1341 46 1 8.1599 -3.1302 -2.1348 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480715465.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:15 Heat of formation + Delta-G solvation = 25.557446 kcal Electronic energy + Delta-G solvation = -26601.070208 eV Core-core repulsion = 22682.984780 eV Total energy + Delta-G solvation = -3918.085428 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.32462 -40.87023 -40.14546 -37.24946 -36.16740 -35.14158 -34.27439 -34.17223 -32.56101 -31.85850 -30.29762 -29.23448 -27.11951 -26.12927 -25.21490 -24.17701 -23.65854 -23.13891 -22.18079 -21.59821 -19.64522 -19.22466 -18.60396 -17.18470 -17.03328 -16.86469 -16.73313 -16.55329 -16.49793 -16.02635 -15.74972 -15.52121 -15.39010 -15.08552 -15.00575 -14.65804 -14.30860 -14.22362 -13.87793 -13.75953 -13.55221 -13.52042 -13.22244 -12.96088 -12.84659 -12.63420 -12.52616 -12.36993 -12.18985 -12.03247 -11.81824 -11.69941 -11.38941 -11.37404 -10.94756 -10.86754 -10.85658 -10.26266 -9.83303 -9.58556 -9.03529 -7.96794 -5.26817 -0.66957 -0.30952 0.23190 0.49450 1.46823 1.47261 1.50336 1.56645 1.91366 2.50294 2.54918 2.68307 2.89116 3.30091 3.36481 3.49877 3.58250 3.69235 3.80832 3.84766 3.86013 3.97444 4.12591 4.16389 4.37161 4.44529 4.47721 4.53688 4.55713 4.59665 4.69805 4.73732 4.76276 4.76584 4.94773 5.00466 5.05020 5.09890 5.18207 5.24233 5.26073 5.29598 5.44145 5.48464 5.59298 5.76959 6.05333 6.25185 6.26395 6.87780 7.31360 7.44392 8.05692 8.30406 9.26409 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.027209 B = 0.001492 C = 0.001438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.834530 B =18762.323270 C =19470.770903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.082 3.918 3 C -0.105 4.105 4 C -0.068 4.068 5 C -0.002 4.002 6 C 0.577 3.423 7 O -0.556 6.556 8 N -0.697 5.697 9 C 0.168 3.832 10 C -0.119 4.119 11 C -0.095 4.095 12 C -0.126 4.126 13 C -0.070 4.070 14 C -0.080 4.080 15 C 0.162 3.838 16 N -0.747 5.747 17 C -0.253 4.253 18 H 0.074 0.926 19 C -0.074 4.074 20 N -0.969 5.969 21 Si 0.976 3.024 22 H -0.277 1.277 23 H -0.292 1.292 24 H -0.277 1.277 25 C -0.126 4.126 26 C -0.095 4.095 27 N -0.229 5.229 28 N -0.277 5.277 29 H 0.101 0.899 30 H 0.113 0.887 31 H 0.080 0.920 32 H 0.203 0.797 33 H 0.176 0.824 34 H 0.416 0.584 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.140 0.860 38 H 0.128 0.872 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.018 0.982 42 H 0.018 0.982 43 H 0.375 0.625 44 H 0.253 0.747 45 H 0.128 0.872 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.213 31.074 0.030 40.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.061 4.061 3 C -0.134 4.134 4 C -0.097 4.097 5 C -0.149 4.149 6 C 0.361 3.639 7 O -0.434 6.434 8 N -0.347 5.347 9 C 0.046 3.954 10 C -0.119 4.119 11 C -0.114 4.114 12 C -0.144 4.144 13 C -0.071 4.071 14 C -0.117 4.117 15 C 0.036 3.964 16 N -0.390 5.390 17 C -0.384 4.384 18 H 0.092 0.908 19 C -0.266 4.266 20 N -0.619 5.619 21 Si 0.805 3.195 22 H -0.203 1.203 23 H -0.218 1.218 24 H -0.203 1.203 25 C -0.144 4.144 26 C -0.114 4.114 27 N -0.075 5.075 28 N -0.122 5.122 29 H 0.119 0.881 30 H 0.131 0.869 31 H 0.098 0.902 32 H 0.220 0.780 33 H 0.194 0.806 34 H 0.253 0.747 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.158 0.842 38 H 0.146 0.854 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.036 0.964 42 H 0.036 0.964 43 H 0.207 0.793 44 H 0.061 0.939 45 H 0.146 0.854 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -24.546 30.165 0.026 38.890 hybrid contribution 0.842 -0.067 0.011 0.844 sum -23.704 30.098 0.037 38.312 Atomic orbital electron populations 1.20928 0.84365 1.05711 1.05163 1.23769 1.01147 0.90116 0.91065 1.22825 0.93336 1.01474 0.95732 1.22714 0.96294 0.98575 0.92096 1.22763 0.95613 0.93293 1.03211 1.17740 0.85815 0.83753 0.76627 1.90790 1.64250 1.36738 1.51627 1.45981 1.08088 1.08308 1.72343 1.20247 0.78995 0.92367 1.03836 1.19775 1.03386 0.95161 0.93617 1.21218 0.97936 0.93919 0.98283 1.21221 1.00269 0.95131 0.97798 1.19917 0.97815 0.95189 0.94142 1.20640 0.95138 0.92934 1.03005 1.20692 0.93118 0.85075 0.97519 1.42583 1.04396 1.02509 1.89555 1.19611 0.85207 0.91737 1.41890 0.90806 1.25607 1.01975 0.95683 1.03337 1.69814 1.33396 0.99523 1.59152 0.85175 0.79625 0.76486 0.78251 1.20316 1.21850 1.20310 1.21222 1.00240 0.95166 0.97792 1.21219 0.97934 0.93919 0.98287 1.73134 1.00539 1.26890 1.06936 1.73045 1.00628 1.26739 1.11744 0.88057 0.86874 0.90160 0.77991 0.80646 0.74689 0.89786 0.89774 0.84170 0.85418 0.90985 0.90986 0.96421 0.96434 0.79322 0.93873 0.85420 0.84175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.29 10.19 71.24 0.73 0.44 16 2 C 0.08 0.85 6.87 42.59 0.29 1.15 16 3 C -0.11 -0.68 9.86 22.49 0.22 -0.45 16 4 C -0.07 -0.80 9.73 22.77 0.22 -0.58 16 5 C 0.00 -0.03 6.83 42.00 0.29 0.25 16 6 C 0.58 11.80 7.82 86.88 0.68 12.48 16 7 O -0.56 -13.73 16.39 -3.74 -0.06 -13.79 16 8 N -0.70 -12.74 5.54 -469.41 -2.60 -15.34 16 9 C 0.17 2.93 5.80 85.63 0.50 3.43 16 10 C -0.12 -2.33 5.25 -19.86 -0.10 -2.43 16 11 C -0.10 -1.98 9.70 22.27 0.22 -1.76 16 12 C -0.13 -3.15 9.70 22.27 0.22 -2.93 16 13 C -0.07 -1.95 5.13 -19.87 -0.10 -2.06 16 14 C -0.08 -2.65 5.46 29.85 0.16 -2.49 16 15 C 0.16 6.79 6.24 86.38 0.54 7.33 16 16 N -0.75 -39.49 5.60 -343.44 -1.92 -41.41 16 17 C -0.25 -14.60 9.99 84.03 0.84 -13.76 16 18 H 0.07 4.10 7.83 -2.91 -0.02 4.08 16 19 C -0.07 -4.32 5.50 84.86 0.47 -3.85 16 20 N -0.97 -60.14 13.06 21.65 0.28 -59.86 16 21 Si 0.98 46.76 29.55 68.60 2.03 48.79 16 22 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 23 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 24 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 25 C -0.13 -3.15 9.70 22.27 0.22 -2.93 16 26 C -0.10 -1.98 9.70 22.27 0.22 -1.76 16 27 N -0.23 -4.71 10.75 -48.49 -0.52 -5.23 16 28 N -0.28 -5.19 11.43 -47.53 -0.54 -5.73 16 29 H 0.10 0.08 8.14 -2.39 -0.02 0.06 16 30 H 0.11 -0.34 8.09 -2.39 -0.02 -0.36 16 31 H 0.08 0.37 8.14 -2.38 -0.02 0.35 16 32 H 0.20 -0.59 8.06 -2.91 -0.02 -0.62 16 33 H 0.18 1.54 7.72 -2.91 -0.02 1.52 16 34 H 0.42 7.46 7.82 -92.71 -0.73 6.74 16 35 H 0.08 1.43 8.08 -2.39 -0.02 1.41 16 36 H 0.08 1.43 8.08 -2.39 -0.02 1.41 16 37 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 38 H 0.13 3.05 8.06 -2.91 -0.02 3.03 16 39 H 0.07 2.40 8.09 -2.39 -0.02 2.38 16 40 H 0.07 2.40 8.09 -2.39 -0.02 2.38 16 41 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 43 H 0.37 20.78 7.67 -92.71 -0.71 20.07 16 44 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 45 H 0.13 3.05 8.06 -2.91 -0.02 3.03 16 46 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -75.80 399.75 1.83 -73.97 By element: Atomic # 1 Polarization: 28.96 SS G_CDS: -0.42 Total: 28.54 kcal Atomic # 6 Polarization: -15.52 SS G_CDS: 5.59 Total: -9.93 kcal Atomic # 7 Polarization: -122.27 SS G_CDS: -5.31 Total: -127.58 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: -0.06 Total: -13.79 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -75.80 1.83 -73.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480715465.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.527 kcal (2) G-P(sol) polarization free energy of solvation -75.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds