Wall clock time and date at job start Tue Mar 31 2020 23:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 110.65536 * 2 1 4 4 N 1.46506 * 109.47231 * 56.80929 * 3 2 1 5 5 C 1.36931 * 120.00011 * 179.97438 * 4 3 2 6 6 H 1.08007 * 120.00100 * 0.02562 * 5 4 3 7 7 C 1.38809 * 120.00302 * 180.02562 * 5 4 3 8 8 N 1.31620 * 119.99563 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00541 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47131 * 89.99634 * 9 7 5 11 11 H 1.48496 * 109.47150 * 209.99965 * 9 7 5 12 12 H 1.48506 * 109.46626 * 329.99880 * 9 7 5 13 13 C 1.54609 * 110.73770 * 236.80711 * 2 1 3 14 14 C 1.54003 * 105.04651 * 263.32875 * 13 2 1 15 15 N 1.47482 * 107.08439 * 1.31003 * 14 13 2 16 16 C 1.34776 * 127.03627 * 154.51185 * 15 14 13 17 17 O 1.21548 * 120.00107 * 185.99752 * 16 15 14 18 18 C 1.47862 * 119.99774 * 5.99824 * 16 15 14 19 19 C 1.40629 * 120.26067 * 196.13264 * 18 16 15 20 20 N 1.30855 * 121.66274 * 179.97438 * 19 18 16 21 21 C 1.33596 * 121.57873 * 359.97438 * 20 19 18 22 22 C 1.40638 * 121.62312 * 180.27870 * 21 20 19 23 23 N 1.31160 * 120.03534 * 180.26407 * 22 21 20 24 24 C 1.32492 * 122.89001 * 359.42078 * 23 22 21 25 25 C 1.36316 * 121.70911 * 0.32006 * 24 23 22 26 26 C 1.40595 * 118.65694 * 359.97438 * 25 24 23 27 27 C 1.38990 * 120.26132 * 16.11745 * 18 16 15 28 28 C 1.48122 * 105.93182 * 334.77938 * 15 14 13 29 29 H 1.08997 * 109.47158 * 183.19491 * 1 2 3 30 30 H 1.09004 * 109.46860 * 303.19294 * 1 2 3 31 31 H 1.09002 * 109.47129 * 63.19050 * 1 2 3 32 32 H 1.09004 * 109.46829 * 176.80519 * 3 2 1 33 33 H 1.08989 * 109.47237 * 296.80774 * 3 2 1 34 34 H 0.97005 * 119.99652 * 359.97438 * 4 3 2 35 35 H 0.97006 * 119.99810 * 180.02562 * 8 7 5 36 36 H 1.09006 * 110.32679 * 144.44202 * 13 2 1 37 37 H 1.09000 * 110.41801 * 22.27262 * 13 2 1 38 38 H 1.08996 * 109.91499 * 241.94530 * 14 13 2 39 39 H 1.08998 * 110.06921 * 120.75833 * 14 13 2 40 40 H 1.08005 * 119.17357 * 359.97438 * 19 18 16 41 41 H 1.07998 * 119.98524 * 359.96118 * 22 21 20 42 42 H 1.08001 * 119.14681 * 180.30304 * 24 23 22 43 43 H 1.08005 * 120.67134 * 179.97438 * 25 24 23 44 44 H 1.07998 * 121.11312 * 359.97438 * 27 18 16 45 45 H 1.08994 * 110.66114 * 157.50999 * 28 15 14 46 46 H 1.09004 * 110.65686 * 280.62450 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0698 1.4317 0.0000 4 7 1.5345 2.1554 1.1559 5 6 1.8816 3.4633 1.3656 6 1 2.5497 3.9615 0.6786 7 6 1.3750 4.1488 2.4610 8 7 0.5612 3.5415 3.2985 9 14 1.8479 5.9332 2.7467 10 1 0.8766 6.8194 2.0564 11 1 1.8332 6.2221 4.2032 12 1 3.2100 6.1766 2.2075 13 6 2.0775 -0.7916 -1.2100 14 6 2.3807 -2.1989 -0.6630 15 7 1.9938 -2.2032 0.7602 16 6 1.6326 -3.2703 1.5000 17 8 1.2324 -3.1141 2.6370 18 6 1.7231 -4.6309 0.9284 19 6 1.0480 -5.7026 1.5394 20 7 1.1087 -6.9174 1.0568 21 6 1.8154 -7.1994 -0.0414 22 6 1.8766 -8.5035 -0.5642 23 7 2.5843 -8.7464 -1.6415 24 6 3.2545 -7.8049 -2.2894 25 6 3.2564 -6.5083 -1.8686 26 6 2.5243 -6.1724 -0.7162 27 6 2.4759 -4.8608 -0.2171 28 6 2.0772 -0.7939 1.2084 29 1 -0.3633 -1.0260 0.0573 30 1 -0.3633 0.5626 0.8600 31 1 -0.3633 0.4635 -0.9172 32 1 3.1581 1.4096 0.0573 33 1 1.7643 1.9351 -0.9171 34 1 0.9342 1.7080 1.7727 35 1 0.2068 4.0207 4.0639 36 1 2.9893 -0.3268 -1.5854 37 1 1.3281 -0.8455 -1.9997 38 1 3.4450 -2.4133 -0.7591 39 1 1.8013 -2.9446 -1.2074 40 1 0.4646 -5.5185 2.4295 41 1 1.3447 -9.3065 -0.0756 42 1 3.8140 -8.0716 -3.1738 43 1 3.8090 -5.7543 -2.4094 44 1 3.0044 -4.0571 -0.7081 45 1 1.4538 -0.6326 2.0878 46 1 3.1112 -0.5158 1.4123 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484104306.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:03 Heat of formation + Delta-G solvation = 62.292885 kcal Electronic energy + Delta-G solvation = -28835.277194 eV Core-core repulsion = 24918.784734 eV Total energy + Delta-G solvation = -3916.492460 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.74638 -40.34784 -38.62664 -37.72863 -35.18735 -34.20943 -32.84122 -31.91184 -30.89600 -30.51264 -29.38994 -26.95432 -26.10480 -25.48422 -24.56687 -23.73762 -23.02461 -22.07223 -20.55079 -19.15684 -18.83519 -17.97874 -17.55722 -17.09401 -16.60251 -16.02089 -15.84792 -15.45040 -15.23109 -14.73722 -14.62406 -14.54568 -14.03402 -13.92838 -13.84332 -13.47136 -13.38219 -13.11485 -12.99052 -12.87908 -12.57075 -12.26378 -12.15888 -11.68012 -11.66066 -11.25441 -11.04866 -10.86224 -10.64525 -10.57706 -10.42947 -10.37477 -10.24603 -10.00346 -9.79185 -9.72043 -9.66989 -8.95132 -8.91658 -8.77890 -6.95635 -5.78493 -3.07905 -0.41591 0.06500 1.26533 2.18997 2.68762 2.94604 3.42033 3.47002 3.49156 3.60103 3.65836 3.83317 3.93762 4.04506 4.19029 4.24238 4.40193 4.51107 4.56425 4.71554 4.76106 4.84482 4.93040 5.03892 5.12586 5.16954 5.20780 5.36204 5.45031 5.51565 5.55437 5.63731 5.73520 5.83526 5.86583 5.90754 6.01592 6.05254 6.08546 6.17635 6.31477 6.41354 6.59080 6.68967 6.77565 7.20225 7.36349 7.46837 7.67257 7.93017 8.39783 9.51219 10.07668 10.41886 11.44036 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026971 B = 0.002231 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.900599 B =12549.708027 C =13216.520011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.078 4.078 3 C 0.169 3.831 4 N -0.731 5.731 5 C -0.242 4.242 6 H 0.070 0.930 7 C -0.012 4.012 8 N -0.931 5.931 9 Si 0.907 3.093 10 H -0.290 1.290 11 H -0.291 1.291 12 H -0.282 1.282 13 C -0.125 4.125 14 C 0.091 3.909 15 N -0.611 5.611 16 C 0.576 3.424 17 O -0.522 6.522 18 C -0.157 4.157 19 C 0.184 3.816 20 N -0.458 5.458 21 C 0.080 3.920 22 C 0.163 3.837 23 N -0.470 5.470 24 C 0.072 3.928 25 C -0.135 4.135 26 C -0.086 4.086 27 C -0.040 4.040 28 C 0.120 3.880 29 H 0.043 0.957 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.021 0.979 33 H 0.024 0.976 34 H 0.385 0.615 35 H 0.256 0.744 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.178 0.822 41 H 0.175 0.825 42 H 0.161 0.839 43 H 0.145 0.855 44 H 0.166 0.834 45 H 0.094 0.906 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.078 -22.132 -13.398 26.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.080 4.080 3 C 0.041 3.959 4 N -0.376 5.376 5 C -0.373 4.373 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.579 5.579 9 Si 0.738 3.262 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.164 4.164 14 C -0.032 4.032 15 N -0.344 5.344 16 C 0.363 3.637 17 O -0.398 6.398 18 C -0.164 4.164 19 C 0.009 3.991 20 N -0.167 5.167 21 C -0.043 4.043 22 C -0.010 4.010 23 N -0.178 5.178 24 C -0.071 4.071 25 C -0.155 4.155 26 C -0.093 4.093 27 C -0.066 4.066 28 C -0.002 4.002 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.039 0.961 33 H 0.042 0.958 34 H 0.220 0.780 35 H 0.066 0.934 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.195 0.805 41 H 0.192 0.808 42 H 0.178 0.822 43 H 0.163 0.837 44 H 0.183 0.817 45 H 0.112 0.888 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.640 -23.547 -12.840 27.219 hybrid contribution 0.535 2.496 0.228 2.563 sum 5.175 -21.051 -12.612 25.079 Atomic orbital electron populations 1.21715 0.93313 1.00674 1.03047 1.21804 0.96741 0.96102 0.93334 1.20625 0.95642 0.87715 0.91915 1.42409 1.56949 1.10868 1.27382 1.19187 1.23182 0.87877 1.07066 0.91216 1.24746 1.00010 0.98319 0.97783 1.69657 1.36061 1.36237 1.15959 0.86200 0.77893 0.85063 0.77064 1.21752 1.21779 1.20801 1.22623 1.02299 0.93285 0.98151 1.22514 0.99482 0.99289 0.81949 1.48719 1.66097 1.08264 1.11351 1.17541 0.78105 0.82806 0.85223 1.90852 1.45685 1.85414 1.17878 1.21174 1.01699 0.96007 0.97487 1.23239 0.92736 0.85762 0.97331 1.68025 1.16947 1.21320 1.10364 1.20125 0.95537 0.95503 0.93158 1.23168 0.93557 0.93578 0.90715 1.67470 1.06313 1.36746 1.07313 1.22313 0.96735 0.88830 0.99183 1.21981 0.99163 0.98702 0.95703 1.18940 0.98983 0.94306 0.97087 1.22768 0.94448 0.96308 0.93104 1.22617 1.02082 0.76898 0.98559 0.93749 0.90954 0.92615 0.96079 0.95816 0.77997 0.93432 0.89901 0.90270 0.91004 0.90578 0.80476 0.80838 0.82227 0.83748 0.81712 0.88781 0.90228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 8.31 37.16 0.31 -1.68 16 2 C -0.08 -1.13 0.64 -152.82 -0.10 -1.22 16 3 C 0.17 3.08 5.10 -4.04 -0.02 3.05 16 4 N -0.73 -17.50 5.15 -59.91 -0.31 -17.81 16 5 C -0.24 -6.55 9.99 -15.06 -0.15 -6.70 16 6 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 7 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 8 N -0.93 -27.85 13.06 55.49 0.72 -27.12 16 9 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 10 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 C -0.13 -1.24 6.09 -25.36 -0.15 -1.40 16 14 C 0.09 0.79 5.00 -2.98 -0.01 0.78 16 15 N -0.61 -7.70 3.21 -171.09 -0.55 -8.25 16 16 C 0.58 7.98 7.77 -12.32 -0.10 7.88 16 17 O -0.52 -9.23 16.65 5.32 0.09 -9.14 16 18 C -0.16 -1.74 5.82 -104.78 -0.61 -2.35 16 19 C 0.18 2.04 10.72 -17.07 -0.18 1.86 16 20 N -0.46 -5.08 10.33 -10.65 -0.11 -5.19 16 21 C 0.08 0.81 6.62 -84.81 -0.56 0.25 16 22 C 0.16 1.45 11.25 -16.93 -0.19 1.26 16 23 N -0.47 -4.22 10.28 -13.11 -0.13 -4.35 16 24 C 0.07 0.50 11.08 -17.96 -0.20 0.30 16 25 C -0.14 -0.88 9.88 -39.39 -0.39 -1.27 16 26 C -0.09 -0.76 5.75 -106.80 -0.61 -1.38 16 27 C -0.04 -0.35 8.10 -38.48 -0.31 -0.66 16 28 C 0.12 1.82 5.68 -2.31 -0.01 1.81 16 29 H 0.04 0.63 8.08 -51.93 -0.42 0.21 16 30 H 0.07 1.33 6.69 -51.93 -0.35 0.99 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.02 0.39 8.10 -51.93 -0.42 -0.04 16 33 H 0.02 0.44 8.14 -51.94 -0.42 0.02 16 34 H 0.39 9.81 6.21 -40.82 -0.25 9.55 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.08 0.73 7.85 -51.93 -0.41 0.33 16 37 H 0.08 0.70 7.86 -51.93 -0.41 0.29 16 38 H 0.07 0.47 7.18 -51.93 -0.37 0.10 16 39 H 0.08 0.55 6.33 -51.93 -0.33 0.22 16 40 H 0.18 1.85 7.72 -52.48 -0.40 1.44 16 41 H 0.17 1.19 8.06 -52.49 -0.42 0.76 16 42 H 0.16 0.65 8.06 -52.49 -0.42 0.23 16 43 H 0.14 0.50 8.06 -52.48 -0.42 0.08 16 44 H 0.17 1.05 4.06 -52.49 -0.21 0.83 16 45 H 0.09 1.73 7.71 -51.93 -0.40 1.33 16 46 H 0.08 1.22 8.01 -51.93 -0.42 0.80 16 LS Contribution 375.26 15.07 5.66 5.66 Total: -1.00 -33.62 375.26 -9.10 -42.73 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -6.05 Total: 6.30 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -3.39 Total: 0.09 kcal Atomic # 7 Polarization: -62.35 SS G_CDS: -0.38 Total: -62.73 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.09 Total: -9.14 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.62 -9.10 -42.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484104306.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.019 kcal (2) G-P(sol) polarization free energy of solvation -33.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds