Wall clock time and date at job start Tue Mar 31 2020 23:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 110.65536 * 2 1 4 4 N 1.46506 * 109.47231 * 56.80929 * 3 2 1 5 5 C 1.36931 * 120.00011 * 179.97438 * 4 3 2 6 6 H 1.08007 * 120.00100 * 0.02562 * 5 4 3 7 7 C 1.38809 * 120.00302 * 180.02562 * 5 4 3 8 8 N 1.31620 * 119.99563 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00541 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47131 * 89.99634 * 9 7 5 11 11 H 1.48496 * 109.47150 * 209.99965 * 9 7 5 12 12 H 1.48506 * 109.46626 * 329.99880 * 9 7 5 13 13 C 1.54609 * 110.73770 * 236.80711 * 2 1 3 14 14 C 1.54003 * 105.04651 * 263.32875 * 13 2 1 15 15 N 1.47482 * 107.08439 * 1.31003 * 14 13 2 16 16 C 1.34776 * 127.03627 * 154.51185 * 15 14 13 17 17 O 1.21548 * 120.00107 * 185.99752 * 16 15 14 18 18 C 1.47862 * 119.99774 * 5.99824 * 16 15 14 19 19 C 1.40629 * 120.26067 * 196.13264 * 18 16 15 20 20 N 1.30855 * 121.66274 * 179.97438 * 19 18 16 21 21 C 1.33596 * 121.57873 * 359.97438 * 20 19 18 22 22 C 1.40638 * 121.62312 * 180.27870 * 21 20 19 23 23 N 1.31160 * 120.03534 * 180.26407 * 22 21 20 24 24 C 1.32492 * 122.89001 * 359.42078 * 23 22 21 25 25 C 1.36316 * 121.70911 * 0.32006 * 24 23 22 26 26 C 1.40595 * 118.65694 * 359.97438 * 25 24 23 27 27 C 1.38990 * 120.26132 * 16.11745 * 18 16 15 28 28 C 1.48122 * 105.93182 * 334.77938 * 15 14 13 29 29 H 1.08997 * 109.47158 * 183.19491 * 1 2 3 30 30 H 1.09004 * 109.46860 * 303.19294 * 1 2 3 31 31 H 1.09002 * 109.47129 * 63.19050 * 1 2 3 32 32 H 1.09004 * 109.46829 * 176.80519 * 3 2 1 33 33 H 1.08989 * 109.47237 * 296.80774 * 3 2 1 34 34 H 0.97005 * 119.99652 * 359.97438 * 4 3 2 35 35 H 0.97006 * 119.99810 * 180.02562 * 8 7 5 36 36 H 1.09006 * 110.32679 * 144.44202 * 13 2 1 37 37 H 1.09000 * 110.41801 * 22.27262 * 13 2 1 38 38 H 1.08996 * 109.91499 * 241.94530 * 14 13 2 39 39 H 1.08998 * 110.06921 * 120.75833 * 14 13 2 40 40 H 1.08005 * 119.17357 * 359.97438 * 19 18 16 41 41 H 1.07998 * 119.98524 * 359.96118 * 22 21 20 42 42 H 1.08001 * 119.14681 * 180.30304 * 24 23 22 43 43 H 1.08005 * 120.67134 * 179.97438 * 25 24 23 44 44 H 1.07998 * 121.11312 * 359.97438 * 27 18 16 45 45 H 1.08994 * 110.66114 * 157.50999 * 28 15 14 46 46 H 1.09004 * 110.65686 * 280.62450 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0698 1.4317 0.0000 4 7 1.5345 2.1554 1.1559 5 6 1.8816 3.4633 1.3656 6 1 2.5497 3.9615 0.6786 7 6 1.3750 4.1488 2.4610 8 7 0.5612 3.5415 3.2985 9 14 1.8479 5.9332 2.7467 10 1 0.8766 6.8194 2.0564 11 1 1.8332 6.2221 4.2032 12 1 3.2100 6.1766 2.2075 13 6 2.0775 -0.7916 -1.2100 14 6 2.3807 -2.1989 -0.6630 15 7 1.9938 -2.2032 0.7602 16 6 1.6326 -3.2703 1.5000 17 8 1.2324 -3.1141 2.6370 18 6 1.7231 -4.6309 0.9284 19 6 1.0480 -5.7026 1.5394 20 7 1.1087 -6.9174 1.0568 21 6 1.8154 -7.1994 -0.0414 22 6 1.8766 -8.5035 -0.5642 23 7 2.5843 -8.7464 -1.6415 24 6 3.2545 -7.8049 -2.2894 25 6 3.2564 -6.5083 -1.8686 26 6 2.5243 -6.1724 -0.7162 27 6 2.4759 -4.8608 -0.2171 28 6 2.0772 -0.7939 1.2084 29 1 -0.3633 -1.0260 0.0573 30 1 -0.3633 0.5626 0.8600 31 1 -0.3633 0.4635 -0.9172 32 1 3.1581 1.4096 0.0573 33 1 1.7643 1.9351 -0.9171 34 1 0.9342 1.7080 1.7727 35 1 0.2068 4.0207 4.0639 36 1 2.9893 -0.3268 -1.5854 37 1 1.3281 -0.8455 -1.9997 38 1 3.4450 -2.4133 -0.7591 39 1 1.8013 -2.9446 -1.2074 40 1 0.4646 -5.5185 2.4295 41 1 1.3447 -9.3065 -0.0756 42 1 3.8140 -8.0716 -3.1738 43 1 3.8090 -5.7543 -2.4094 44 1 3.0044 -4.0571 -0.7081 45 1 1.4538 -0.6326 2.0878 46 1 3.1112 -0.5158 1.4123 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484104306.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:02 Heat of formation + Delta-G solvation = 39.300691 kcal Electronic energy + Delta-G solvation = -28836.274211 eV Core-core repulsion = 24918.784734 eV Total energy + Delta-G solvation = -3917.489477 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.47193 -41.30809 -39.55921 -38.66168 -36.62296 -35.19248 -34.20624 -32.82221 -32.10160 -31.46533 -30.51935 -28.09639 -27.45694 -26.51433 -25.51148 -24.85305 -23.96485 -23.25724 -21.42831 -20.23123 -19.80023 -19.14929 -18.66072 -18.15472 -17.50087 -17.13582 -16.78646 -16.51750 -16.13519 -15.94155 -15.62269 -15.46480 -15.23648 -15.15644 -14.88891 -14.60067 -14.49511 -14.29584 -13.89321 -13.72044 -13.57289 -13.44518 -13.36823 -13.01592 -12.84580 -12.78096 -12.53952 -12.14894 -12.07351 -11.94292 -11.70611 -11.51635 -11.41679 -11.34962 -10.99103 -10.91690 -10.53298 -10.49856 -9.81034 -9.54175 -8.95771 -7.92530 -5.20675 -1.08633 -0.64193 0.62288 1.36442 1.47745 1.49342 1.57679 1.68964 2.10023 2.57463 2.91954 2.94876 3.13164 3.25900 3.40540 3.44405 3.48467 3.53349 3.61698 3.66304 3.86777 3.91354 4.17279 4.21393 4.23095 4.28220 4.30808 4.37015 4.47987 4.56697 4.63516 4.69787 4.78315 4.81547 4.83621 4.91947 4.97023 5.02997 5.06831 5.14109 5.19567 5.29050 5.36539 5.46902 5.49892 5.53321 6.29307 6.35390 6.52525 6.85726 6.89714 7.35878 8.14170 8.34466 9.31147 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026971 B = 0.002231 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.900599 B =12549.708027 C =13216.520011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.073 4.073 3 C 0.166 3.834 4 N -0.746 5.746 5 C -0.238 4.238 6 H 0.080 0.920 7 C -0.081 4.081 8 N -0.972 5.972 9 Si 0.972 3.028 10 H -0.288 1.288 11 H -0.301 1.301 12 H -0.266 1.266 13 C -0.114 4.114 14 C 0.084 3.916 15 N -0.608 5.608 16 C 0.573 3.427 17 O -0.577 6.577 18 C -0.174 4.174 19 C 0.172 3.828 20 N -0.474 5.474 21 C 0.062 3.938 22 C 0.149 3.851 23 N -0.482 5.482 24 C 0.064 3.936 25 C -0.118 4.118 26 C -0.098 4.098 27 C -0.012 4.012 28 C 0.123 3.877 29 H 0.052 0.948 30 H 0.028 0.972 31 H 0.067 0.933 32 H 0.032 0.968 33 H 0.032 0.968 34 H 0.373 0.627 35 H 0.249 0.751 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.110 0.890 39 H 0.102 0.898 40 H 0.169 0.831 41 H 0.182 0.818 42 H 0.192 0.808 43 H 0.187 0.813 44 H 0.197 0.803 45 H 0.046 0.954 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.685 -22.859 -17.757 29.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.074 4.074 3 C 0.040 3.960 4 N -0.389 5.389 5 C -0.369 4.369 6 H 0.098 0.902 7 C -0.272 4.272 8 N -0.624 5.624 9 Si 0.801 3.199 10 H -0.215 1.215 11 H -0.228 1.228 12 H -0.191 1.191 13 C -0.152 4.152 14 C -0.037 4.037 15 N -0.340 5.340 16 C 0.363 3.637 17 O -0.458 6.458 18 C -0.181 4.181 19 C -0.002 4.002 20 N -0.183 5.183 21 C -0.061 4.061 22 C -0.023 4.023 23 N -0.191 5.191 24 C -0.078 4.078 25 C -0.138 4.138 26 C -0.105 4.105 27 C -0.038 4.038 28 C 0.000 4.000 29 H 0.071 0.929 30 H 0.047 0.953 31 H 0.086 0.914 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.205 0.795 35 H 0.057 0.943 36 H 0.123 0.877 37 H 0.117 0.883 38 H 0.128 0.872 39 H 0.120 0.880 40 H 0.186 0.814 41 H 0.199 0.801 42 H 0.209 0.791 43 H 0.205 0.795 44 H 0.214 0.786 45 H 0.065 0.935 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.285 -24.296 -17.287 30.695 hybrid contribution -0.209 2.615 1.436 2.991 sum 7.076 -21.681 -15.851 27.774 Atomic orbital electron populations 1.21623 0.94323 1.00489 1.01606 1.21669 0.95798 0.94402 0.95553 1.20843 0.95959 0.89424 0.89797 1.42678 1.56879 1.10436 1.28901 1.19653 1.21772 0.89130 1.06392 0.90187 1.25574 1.00965 1.02452 0.98253 1.69838 1.38140 1.37721 1.16674 0.85157 0.78194 0.80334 0.76190 1.21546 1.22781 1.19100 1.22632 1.03589 0.92836 0.96148 1.22917 1.02228 0.99387 0.79203 1.48724 1.65506 1.06661 1.13082 1.17982 0.77110 0.83962 0.84651 1.90820 1.48292 1.86288 1.20404 1.20835 1.04058 0.93986 0.99189 1.23161 0.93310 0.86214 0.97522 1.67989 1.17833 1.21139 1.11304 1.20412 0.95940 0.96609 0.93177 1.23307 0.94287 0.93562 0.91188 1.67508 1.06410 1.37930 1.07245 1.22926 0.96272 0.88857 0.99784 1.22403 0.97663 0.99464 0.94225 1.19180 0.99379 0.93907 0.98037 1.23032 0.92422 0.96998 0.91340 1.22352 1.00931 0.79168 0.97528 0.92924 0.95307 0.91357 0.95030 0.95014 0.79462 0.94265 0.87727 0.88273 0.87219 0.87995 0.81391 0.80091 0.79104 0.79539 0.78621 0.93482 0.90366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.76 8.31 71.98 0.60 -3.16 16 2 C -0.07 -2.00 0.64 -51.09 -0.03 -2.03 16 3 C 0.17 5.84 5.10 86.38 0.44 6.28 16 4 N -0.75 -36.39 5.15 -343.45 -1.77 -38.16 16 5 C -0.24 -12.92 9.99 84.03 0.84 -12.08 16 6 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 7 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 8 N -0.97 -60.54 13.06 21.65 0.28 -60.26 16 9 Si 0.97 46.11 29.55 68.60 2.03 48.14 16 10 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 11 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 12 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 13 C -0.11 -1.73 6.09 31.48 0.19 -1.54 16 14 C 0.08 1.06 5.00 86.53 0.43 1.49 16 15 N -0.61 -14.56 3.21 -813.47 -2.61 -17.17 16 16 C 0.57 16.13 7.77 86.79 0.67 16.80 16 17 O -0.58 -22.05 16.65 -3.87 -0.06 -22.12 16 18 C -0.17 -3.73 5.82 -19.97 -0.12 -3.84 16 19 C 0.17 4.00 10.72 85.42 0.92 4.92 16 20 N -0.47 -10.69 10.33 -187.60 -1.94 -12.62 16 21 C 0.06 1.18 6.62 40.36 0.27 1.45 16 22 C 0.15 2.49 11.25 85.38 0.96 3.45 16 23 N -0.48 -7.51 10.28 -195.39 -2.01 -9.52 16 24 C 0.06 0.62 11.08 84.14 0.93 1.56 16 25 C -0.12 -0.93 9.88 22.40 0.22 -0.71 16 26 C -0.10 -1.41 5.75 -21.27 -0.12 -1.53 16 27 C -0.01 -0.17 8.10 22.98 0.19 0.02 16 28 C 0.12 3.79 5.68 86.61 0.49 4.28 16 29 H 0.05 1.49 8.08 -2.39 -0.02 1.47 16 30 H 0.03 1.11 6.69 -2.39 -0.02 1.10 16 31 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.03 1.07 8.10 -2.39 -0.02 1.05 16 33 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.37 20.01 6.21 -92.70 -0.58 19.43 16 35 H 0.25 15.12 8.31 -92.70 -0.77 14.35 16 36 H 0.10 1.23 7.85 -2.38 -0.02 1.21 16 37 H 0.10 1.20 7.86 -2.39 -0.02 1.18 16 38 H 0.11 0.68 7.18 -2.39 -0.02 0.66 16 39 H 0.10 0.85 6.33 -2.39 -0.02 0.83 16 40 H 0.17 3.98 7.72 -2.91 -0.02 3.96 16 41 H 0.18 2.47 8.06 -2.91 -0.02 2.44 16 42 H 0.19 0.57 8.06 -2.91 -0.02 0.55 16 43 H 0.19 -0.11 8.06 -2.91 -0.02 -0.13 16 44 H 0.20 1.30 4.06 -2.91 -0.01 1.29 16 45 H 0.05 1.89 7.71 -2.39 -0.02 1.87 16 46 H 0.08 2.40 8.01 -2.38 -0.02 2.38 16 Total: -1.00 -79.29 375.26 1.71 -77.57 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: 0.45 Total: 22.94 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: 7.35 Total: 11.19 kcal Atomic # 7 Polarization: -129.69 SS G_CDS: -8.04 Total: -137.73 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -0.06 Total: -22.12 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -79.29 1.71 -77.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484104306.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.875 kcal (2) G-P(sol) polarization free energy of solvation -79.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds