Wall clock time and date at job start Tue Mar 31 2020 23:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46507 * 109.45781 * 2 1 4 4 C 1.36936 * 119.99909 * 299.97231 * 3 2 1 5 5 H 1.07992 * 120.00525 * 0.02562 * 4 3 2 6 6 C 1.38818 * 119.99531 * 180.02562 * 4 3 2 7 7 N 1.31619 * 119.99620 * 180.02562 * 6 4 3 8 8 Si 1.86797 * 120.00021 * 359.97438 * 6 4 3 9 9 H 1.48496 * 109.46942 * 90.00763 * 8 6 4 10 10 H 1.48502 * 109.46955 * 210.00068 * 8 6 4 11 11 H 1.48497 * 109.47538 * 330.00322 * 8 6 4 12 12 C 1.53035 * 109.46429 * 119.97338 * 2 1 3 13 13 C 1.53192 * 109.31589 * 181.38515 * 12 2 1 14 14 N 1.46921 * 108.77325 * 305.36483 * 13 12 2 15 15 C 1.34778 * 120.63322 * 233.58186 * 14 13 12 16 16 O 1.21559 * 119.99633 * 5.85750 * 15 14 13 17 17 C 1.47858 * 120.00258 * 185.85710 * 15 14 13 18 18 C 1.40620 * 119.75213 * 221.88473 * 17 15 14 19 19 C 1.35741 * 120.83298 * 179.97438 * 18 17 15 20 20 C 1.40707 * 120.08189 * 359.97438 * 19 18 17 21 21 N 1.33789 * 120.85826 * 179.97438 * 20 19 18 22 22 C 1.31326 * 119.76392 * 180.02562 * 21 20 19 23 23 C 1.39758 * 120.71116 * 0.04321 * 22 21 20 24 24 N 1.31277 * 120.67366 * 359.97438 * 23 22 21 25 25 C 1.33821 * 119.73354 * 359.97438 * 24 23 22 26 26 C 1.38414 * 119.75796 * 42.14050 * 17 15 14 27 27 C 1.46932 * 118.73848 * 53.86349 * 14 13 12 28 28 C 1.53042 * 109.45757 * 240.04538 * 2 1 3 29 29 H 1.08996 * 109.47095 * 300.02399 * 1 2 3 30 30 H 1.08999 * 109.47503 * 60.02513 * 1 2 3 31 31 H 1.09001 * 109.47234 * 180.02562 * 1 2 3 32 32 H 0.97003 * 119.99615 * 119.97521 * 3 2 1 33 33 H 0.96998 * 119.99598 * 179.97438 * 7 6 4 34 34 H 1.09000 * 109.49472 * 61.43397 * 12 2 1 35 35 H 1.09005 * 109.52504 * 301.35546 * 12 2 1 36 36 H 1.08999 * 109.58654 * 185.57752 * 13 12 2 37 37 H 1.08996 * 109.69990 * 65.22232 * 13 12 2 38 38 H 1.07991 * 119.58753 * 359.96970 * 18 17 15 39 39 H 1.07994 * 119.95629 * 179.97438 * 19 18 17 40 40 H 1.08007 * 119.64841 * 180.02562 * 22 21 20 41 41 H 1.07998 * 119.66466 * 179.97438 * 23 22 21 42 42 H 1.08001 * 120.24882 * 0.02562 * 26 17 15 43 43 H 1.09002 * 109.58432 * 65.92215 * 27 14 13 44 44 H 1.09002 * 109.58194 * 186.34987 * 27 14 13 45 45 H 1.08996 * 109.49918 * 298.56026 * 28 2 1 46 46 H 1.08994 * 109.49967 * 58.62989 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0180 1.3814 0.0000 4 6 1.6875 2.2243 -1.0273 5 1 1.0667 1.8710 -1.8373 6 6 2.1504 3.5330 -1.0275 7 7 1.8322 4.3434 -2.0147 8 14 3.2235 4.1444 0.3739 9 1 4.6514 3.9019 0.0460 10 1 3.0008 5.5995 0.5695 11 1 2.8715 3.4178 1.6203 12 6 2.0399 -0.7209 1.2499 13 6 3.5714 -0.6887 1.2641 14 7 4.0678 -1.2488 -0.0003 15 6 4.9621 -2.2571 -0.0005 16 8 5.2853 -2.7831 1.0467 17 6 5.5501 -2.7236 -1.2744 18 6 5.7087 -4.1013 -1.5067 19 6 6.2454 -4.5538 -2.6685 20 6 6.6513 -3.6418 -3.6602 21 7 7.1827 -4.0706 -4.8107 22 6 7.5546 -3.2005 -5.7213 23 6 7.4024 -1.8286 -5.5020 24 7 6.8841 -1.3830 -4.3812 25 6 6.4965 -2.2500 -3.4383 26 6 5.9453 -1.8007 -2.2273 27 6 3.5756 -0.6845 -1.2645 28 6 2.0398 -0.7205 -1.2503 29 1 -0.3633 0.5142 0.8897 30 1 -0.3634 0.5134 -0.8902 31 1 -0.3634 -1.0277 0.0005 32 1 2.5753 1.6988 0.7277 33 1 2.1554 5.2579 -2.0146 34 1 1.6979 -1.7557 1.2380 35 1 1.6573 -0.2215 2.1401 36 1 3.9418 -1.2847 2.0981 37 1 3.9164 0.3400 1.3685 38 1 5.3996 -4.8085 -0.7513 39 1 6.3611 -5.6150 -2.8318 40 1 7.9829 -3.5487 -6.6497 41 1 7.7144 -1.1279 -6.2623 42 1 5.8259 -0.7432 -2.0429 43 1 3.9188 0.3453 -1.3631 44 1 3.9487 -1.2779 -2.0992 45 1 1.6978 -1.7554 -1.2387 46 1 1.6567 -0.2207 -2.1399 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484929164.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:49 Heat of formation + Delta-G solvation = 61.708816 kcal Electronic energy + Delta-G solvation = -29939.673880 eV Core-core repulsion = 26023.156092 eV Total energy + Delta-G solvation = -3916.517787 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.70933 -40.30099 -38.24259 -37.11632 -35.14096 -34.67275 -32.48130 -31.57545 -31.07008 -30.34229 -29.74625 -27.93606 -25.94682 -24.83949 -23.72787 -23.33650 -22.78441 -22.36486 -20.55484 -18.93918 -18.55731 -17.87897 -17.68660 -17.21393 -16.61960 -15.87394 -15.42908 -15.15332 -14.97635 -14.56302 -14.53156 -14.30346 -14.10178 -13.86062 -13.69958 -13.40732 -13.05324 -12.68748 -12.58044 -12.34435 -12.09115 -12.03793 -12.00054 -11.91761 -11.79382 -11.44413 -11.31398 -11.03725 -10.90043 -10.88336 -10.44499 -10.22378 -9.91115 -9.82675 -9.52210 -9.38484 -9.24985 -9.01143 -8.77913 -8.42929 -7.31489 -5.80978 -3.16730 -0.17882 0.18845 1.57881 2.19593 2.86858 3.07415 3.32940 3.35432 3.42601 3.68906 3.75295 3.84368 3.96324 4.34694 4.51020 4.54636 4.64901 4.76897 4.92499 5.05189 5.06715 5.14139 5.18216 5.37153 5.41151 5.46782 5.52902 5.57935 5.60097 5.70807 5.83662 5.88476 5.89508 5.96231 6.00891 6.11022 6.24973 6.27691 6.31661 6.36995 6.50314 6.57756 6.66150 6.89247 6.96205 6.97325 7.42697 7.49154 7.94570 8.12605 8.38261 9.15945 9.88806 10.08535 11.37144 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011722 B = 0.003770 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.033078 B = 7424.370920 C = 8668.269604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.203 3.797 3 N -0.743 5.743 4 C -0.238 4.238 5 H 0.092 0.908 6 C 0.008 3.992 7 N -0.932 5.932 8 Si 0.876 3.124 9 H -0.285 1.285 10 H -0.292 1.292 11 H -0.278 1.278 12 C -0.132 4.132 13 C 0.115 3.885 14 N -0.592 5.592 15 C 0.556 3.444 16 O -0.542 6.542 17 C -0.101 4.101 18 C -0.054 4.054 19 C -0.090 4.090 20 C 0.090 3.910 21 N -0.429 5.429 22 C 0.082 3.918 23 C 0.074 3.926 24 N -0.413 5.413 25 C 0.072 3.928 26 C -0.041 4.041 27 C 0.104 3.896 28 C -0.133 4.133 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.038 0.962 32 H 0.360 0.640 33 H 0.259 0.741 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.071 0.929 38 H 0.144 0.856 39 H 0.145 0.855 40 H 0.176 0.824 41 H 0.177 0.823 42 H 0.153 0.847 43 H 0.092 0.908 44 H 0.076 0.924 45 H 0.052 0.948 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.554 -16.999 -3.650 19.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.113 3.887 3 N -0.387 5.387 4 C -0.368 4.368 5 H 0.110 0.890 6 C -0.188 4.188 7 N -0.580 5.580 8 Si 0.707 3.293 9 H -0.212 1.212 10 H -0.218 1.218 11 H -0.204 1.204 12 C -0.171 4.171 13 C -0.007 4.007 14 N -0.323 5.323 15 C 0.344 3.656 16 O -0.421 6.421 17 C -0.106 4.106 18 C -0.074 4.074 19 C -0.109 4.109 20 C -0.034 4.034 21 N -0.143 5.143 22 C -0.094 4.094 23 C -0.102 4.102 24 N -0.127 5.127 25 C -0.052 4.052 26 C -0.061 4.061 27 C -0.018 4.018 28 C -0.173 4.173 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.057 0.943 32 H 0.194 0.806 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.089 0.911 38 H 0.162 0.838 39 H 0.163 0.837 40 H 0.193 0.807 41 H 0.194 0.806 42 H 0.171 0.829 43 H 0.110 0.890 44 H 0.095 0.905 45 H 0.070 0.930 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.510 -17.176 -3.063 19.411 hybrid contribution 0.745 0.841 0.661 1.304 sum 9.255 -16.334 -2.402 18.927 Atomic orbital electron populations 1.22184 0.96874 0.99290 1.02542 1.19494 0.92531 0.85051 0.91660 1.42899 1.61584 1.07667 1.26504 1.18957 1.26504 0.91442 0.99878 0.89010 1.24621 1.00466 0.96313 0.97391 1.69685 1.49641 1.06409 1.32255 0.86684 0.81183 0.78328 0.83096 1.21162 1.21841 1.20384 1.22137 0.94562 1.01017 0.99381 1.21615 0.94508 0.98946 0.85620 1.48088 1.41601 1.33847 1.08757 1.18171 0.79513 0.79756 0.88166 1.90768 1.61983 1.56808 1.32533 1.20025 1.01430 0.94291 0.94845 1.20918 0.95581 0.94093 0.96828 1.20665 0.98618 0.99860 0.91770 1.19655 0.97837 0.92312 0.93587 1.68716 1.07422 1.37745 1.00454 1.24149 0.95412 0.91037 0.98762 1.24135 0.95064 0.95747 0.95273 1.68731 1.06120 1.37109 1.00698 1.19410 1.00112 0.90392 0.95245 1.21489 0.93791 1.01077 0.89714 1.22214 0.95738 1.00051 0.83789 1.22356 0.94132 0.99387 1.01400 0.93118 0.91971 0.94336 0.80599 0.93097 0.91273 0.90615 0.89330 0.91062 0.83823 0.83712 0.80679 0.80551 0.82906 0.88966 0.90539 0.92963 0.89967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 8.44 37.16 0.31 -2.20 16 2 C 0.20 3.49 0.74 -131.78 -0.10 3.39 16 3 N -0.74 -15.64 3.93 -47.19 -0.19 -15.82 16 4 C -0.24 -6.06 9.16 -15.06 -0.14 -6.19 16 5 H 0.09 2.52 6.93 -52.49 -0.36 2.16 16 6 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 7 N -0.93 -27.96 13.97 55.49 0.78 -27.18 16 8 Si 0.88 21.17 27.73 -169.99 -4.71 16.46 16 9 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 10 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 11 H -0.28 -6.31 6.52 56.52 0.37 -5.94 16 12 C -0.13 -1.95 4.96 -26.61 -0.13 -2.08 16 13 C 0.12 1.75 6.16 -3.71 -0.02 1.73 16 14 N -0.59 -9.03 2.97 -173.60 -0.51 -9.54 16 15 C 0.56 8.54 7.28 -12.32 -0.09 8.45 16 16 O -0.54 -9.57 16.36 5.31 0.09 -9.48 16 17 C -0.10 -1.34 5.07 -105.00 -0.53 -1.87 16 18 C -0.05 -0.60 9.54 -39.58 -0.38 -0.98 16 19 C -0.09 -0.95 9.95 -39.54 -0.39 -1.35 16 20 C 0.09 1.10 6.59 -84.73 -0.56 0.54 16 21 N -0.43 -4.76 10.46 -10.74 -0.11 -4.87 16 22 C 0.08 0.67 11.21 -17.20 -0.19 0.48 16 23 C 0.07 0.66 11.22 -17.22 -0.19 0.47 16 24 N -0.41 -5.28 10.46 -10.81 -0.11 -5.39 16 25 C 0.07 0.95 6.58 -84.82 -0.56 0.39 16 26 C -0.04 -0.55 7.35 -38.69 -0.28 -0.83 16 27 C 0.10 1.62 4.69 -3.48 -0.02 1.60 16 28 C -0.13 -2.14 4.72 -26.38 -0.12 -2.27 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.06 1.16 7.27 -51.93 -0.38 0.78 16 31 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.36 7.66 4.33 -40.82 -0.18 7.48 16 33 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.09 1.31 7.00 -51.93 -0.36 0.95 16 37 H 0.07 1.15 6.95 -51.93 -0.36 0.78 16 38 H 0.14 1.42 8.06 -52.49 -0.42 0.99 16 39 H 0.15 1.21 8.06 -52.49 -0.42 0.78 16 40 H 0.18 0.68 8.06 -52.48 -0.42 0.26 16 41 H 0.18 0.90 8.06 -52.49 -0.42 0.48 16 42 H 0.15 2.12 6.73 -52.49 -0.35 1.77 16 43 H 0.09 1.67 7.73 -51.93 -0.40 1.26 16 44 H 0.08 1.09 4.83 -51.93 -0.25 0.84 16 45 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.08 1.47 7.31 -51.93 -0.38 1.09 16 LS Contribution 366.10 15.07 5.52 5.52 Total: -1.00 -32.65 366.10 -8.76 -41.41 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -6.00 Total: 9.51 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: -3.49 Total: -0.61 kcal Atomic # 7 Polarization: -62.66 SS G_CDS: -0.15 Total: -62.81 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.09 Total: -9.48 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.71 Total: 16.46 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.65 -8.76 -41.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484929164.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.117 kcal (2) G-P(sol) polarization free energy of solvation -32.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds