Wall clock time and date at job start Tue Mar 31 2020 23:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46507 * 109.45781 * 2 1 4 4 C 1.36936 * 119.99909 * 299.97231 * 3 2 1 5 5 H 1.07992 * 120.00525 * 0.02562 * 4 3 2 6 6 C 1.38818 * 119.99531 * 180.02562 * 4 3 2 7 7 N 1.31619 * 119.99620 * 180.02562 * 6 4 3 8 8 Si 1.86797 * 120.00021 * 359.97438 * 6 4 3 9 9 H 1.48496 * 109.46942 * 90.00763 * 8 6 4 10 10 H 1.48502 * 109.46955 * 210.00068 * 8 6 4 11 11 H 1.48497 * 109.47538 * 330.00322 * 8 6 4 12 12 C 1.53035 * 109.46429 * 119.97338 * 2 1 3 13 13 C 1.53192 * 109.31589 * 181.38515 * 12 2 1 14 14 N 1.46921 * 108.77325 * 305.36483 * 13 12 2 15 15 C 1.34778 * 120.63322 * 233.58186 * 14 13 12 16 16 O 1.21559 * 119.99633 * 5.85750 * 15 14 13 17 17 C 1.47858 * 120.00258 * 185.85710 * 15 14 13 18 18 C 1.40620 * 119.75213 * 221.88473 * 17 15 14 19 19 C 1.35741 * 120.83298 * 179.97438 * 18 17 15 20 20 C 1.40707 * 120.08189 * 359.97438 * 19 18 17 21 21 N 1.33789 * 120.85826 * 179.97438 * 20 19 18 22 22 C 1.31326 * 119.76392 * 180.02562 * 21 20 19 23 23 C 1.39758 * 120.71116 * 0.04321 * 22 21 20 24 24 N 1.31277 * 120.67366 * 359.97438 * 23 22 21 25 25 C 1.33821 * 119.73354 * 359.97438 * 24 23 22 26 26 C 1.38414 * 119.75796 * 42.14050 * 17 15 14 27 27 C 1.46932 * 118.73848 * 53.86349 * 14 13 12 28 28 C 1.53042 * 109.45757 * 240.04538 * 2 1 3 29 29 H 1.08996 * 109.47095 * 300.02399 * 1 2 3 30 30 H 1.08999 * 109.47503 * 60.02513 * 1 2 3 31 31 H 1.09001 * 109.47234 * 180.02562 * 1 2 3 32 32 H 0.97003 * 119.99615 * 119.97521 * 3 2 1 33 33 H 0.96998 * 119.99598 * 179.97438 * 7 6 4 34 34 H 1.09000 * 109.49472 * 61.43397 * 12 2 1 35 35 H 1.09005 * 109.52504 * 301.35546 * 12 2 1 36 36 H 1.08999 * 109.58654 * 185.57752 * 13 12 2 37 37 H 1.08996 * 109.69990 * 65.22232 * 13 12 2 38 38 H 1.07991 * 119.58753 * 359.96970 * 18 17 15 39 39 H 1.07994 * 119.95629 * 179.97438 * 19 18 17 40 40 H 1.08007 * 119.64841 * 180.02562 * 22 21 20 41 41 H 1.07998 * 119.66466 * 179.97438 * 23 22 21 42 42 H 1.08001 * 120.24882 * 0.02562 * 26 17 15 43 43 H 1.09002 * 109.58432 * 65.92215 * 27 14 13 44 44 H 1.09002 * 109.58194 * 186.34987 * 27 14 13 45 45 H 1.08996 * 109.49918 * 298.56026 * 28 2 1 46 46 H 1.08994 * 109.49967 * 58.62989 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0180 1.3814 0.0000 4 6 1.6875 2.2243 -1.0273 5 1 1.0667 1.8710 -1.8373 6 6 2.1504 3.5330 -1.0275 7 7 1.8322 4.3434 -2.0147 8 14 3.2235 4.1444 0.3739 9 1 4.6514 3.9019 0.0460 10 1 3.0008 5.5995 0.5695 11 1 2.8715 3.4178 1.6203 12 6 2.0399 -0.7209 1.2499 13 6 3.5714 -0.6887 1.2641 14 7 4.0678 -1.2488 -0.0003 15 6 4.9621 -2.2571 -0.0005 16 8 5.2853 -2.7831 1.0467 17 6 5.5501 -2.7236 -1.2744 18 6 5.7087 -4.1013 -1.5067 19 6 6.2454 -4.5538 -2.6685 20 6 6.6513 -3.6418 -3.6602 21 7 7.1827 -4.0706 -4.8107 22 6 7.5546 -3.2005 -5.7213 23 6 7.4024 -1.8286 -5.5020 24 7 6.8841 -1.3830 -4.3812 25 6 6.4965 -2.2500 -3.4383 26 6 5.9453 -1.8007 -2.2273 27 6 3.5756 -0.6845 -1.2645 28 6 2.0398 -0.7205 -1.2503 29 1 -0.3633 0.5142 0.8897 30 1 -0.3634 0.5134 -0.8902 31 1 -0.3634 -1.0277 0.0005 32 1 2.5753 1.6988 0.7277 33 1 2.1554 5.2579 -2.0146 34 1 1.6979 -1.7557 1.2380 35 1 1.6573 -0.2215 2.1401 36 1 3.9418 -1.2847 2.0981 37 1 3.9164 0.3400 1.3685 38 1 5.3996 -4.8085 -0.7513 39 1 6.3611 -5.6150 -2.8318 40 1 7.9829 -3.5487 -6.6497 41 1 7.7144 -1.1279 -6.2623 42 1 5.8259 -0.7432 -2.0429 43 1 3.9188 0.3453 -1.3631 44 1 3.9487 -1.2779 -2.0992 45 1 1.6978 -1.7554 -1.2387 46 1 1.6567 -0.2207 -2.1399 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484929164.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:48 Heat of formation + Delta-G solvation = 39.919038 kcal Electronic energy + Delta-G solvation = -29940.618755 eV Core-core repulsion = 26023.156092 eV Total energy + Delta-G solvation = -3917.462663 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.56795 -41.48555 -39.54363 -38.10955 -36.27180 -35.83611 -34.27560 -32.75294 -31.92004 -31.61474 -31.37535 -29.23384 -26.86485 -25.80761 -25.43333 -24.56891 -24.05177 -23.35885 -21.71293 -20.09849 -19.78601 -19.52009 -18.91704 -18.13304 -17.68832 -17.00084 -16.52940 -16.41634 -16.16267 -15.88080 -15.73500 -15.41686 -15.19320 -15.11366 -14.99616 -14.70741 -14.37170 -14.33443 -13.68215 -13.63475 -13.54535 -12.98223 -12.93938 -12.89603 -12.81589 -12.74417 -12.72954 -12.66757 -12.57989 -12.18676 -12.02420 -11.83670 -11.65450 -11.19130 -11.12484 -10.87962 -10.17776 -10.10567 -9.78583 -9.67975 -9.20838 -7.94433 -5.25528 -1.03038 -0.63056 0.69802 1.25958 1.38364 1.39330 1.46591 1.76193 1.97201 2.52109 2.86574 2.93743 3.06534 3.15379 3.32373 3.37778 3.54404 3.70052 3.84072 3.86466 3.92305 3.95929 4.10338 4.13974 4.19140 4.34417 4.41519 4.53378 4.56637 4.59956 4.65928 4.73921 4.82673 4.85881 4.94521 4.98924 5.02544 5.07432 5.11668 5.15692 5.24914 5.26643 5.48893 5.53655 5.58961 5.89150 6.19046 6.25406 6.30241 6.65239 6.91089 7.16314 7.92850 8.10778 9.27201 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011722 B = 0.003770 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.033078 B = 7424.370920 C = 8668.269604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.194 3.806 3 N -0.743 5.743 4 C -0.200 4.200 5 H 0.065 0.935 6 C -0.060 4.060 7 N -0.985 5.985 8 Si 0.935 3.065 9 H -0.287 1.287 10 H -0.304 1.304 11 H -0.252 1.252 12 C -0.122 4.122 13 C 0.113 3.887 14 N -0.591 5.591 15 C 0.560 3.440 16 O -0.565 6.565 17 C -0.109 4.109 18 C -0.057 4.057 19 C -0.079 4.079 20 C 0.075 3.925 21 N -0.447 5.447 22 C 0.098 3.902 23 C 0.083 3.917 24 N -0.455 5.455 25 C 0.051 3.949 26 C -0.051 4.051 27 C 0.116 3.884 28 C -0.128 4.128 29 H 0.049 0.951 30 H 0.033 0.967 31 H 0.070 0.930 32 H 0.362 0.638 33 H 0.253 0.747 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.060 0.940 38 H 0.158 0.842 39 H 0.170 0.830 40 H 0.224 0.776 41 H 0.216 0.784 42 H 0.137 0.863 43 H 0.062 0.938 44 H 0.089 0.911 45 H 0.077 0.923 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.582 -19.792 -3.705 22.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.105 3.895 3 N -0.387 5.387 4 C -0.331 4.331 5 H 0.083 0.917 6 C -0.251 4.251 7 N -0.637 5.637 8 Si 0.765 3.235 9 H -0.214 1.214 10 H -0.232 1.232 11 H -0.177 1.177 12 C -0.160 4.160 13 C -0.009 4.009 14 N -0.322 5.322 15 C 0.349 3.651 16 O -0.446 6.446 17 C -0.114 4.114 18 C -0.078 4.078 19 C -0.098 4.098 20 C -0.047 4.047 21 N -0.161 5.161 22 C -0.078 4.078 23 C -0.093 4.093 24 N -0.170 5.170 25 C -0.071 4.071 26 C -0.071 4.071 27 C -0.007 4.007 28 C -0.168 4.168 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.089 0.911 32 H 0.196 0.804 33 H 0.062 0.938 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.114 0.886 37 H 0.078 0.922 38 H 0.176 0.824 39 H 0.188 0.812 40 H 0.241 0.759 41 H 0.232 0.768 42 H 0.155 0.845 43 H 0.080 0.920 44 H 0.107 0.893 45 H 0.095 0.905 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.517 -20.036 -3.052 22.391 hybrid contribution 0.486 1.603 0.452 1.735 sum 10.002 -18.434 -2.600 21.133 Atomic orbital electron populations 1.22107 0.96168 1.00954 1.01078 1.19814 0.92968 0.83183 0.93575 1.42929 1.61538 1.08918 1.25271 1.18875 1.23403 0.91408 0.99441 0.91710 1.25258 1.02990 0.96973 0.99926 1.69852 1.52376 1.06587 1.34839 0.85702 0.79276 0.77099 0.81453 1.21369 1.23182 1.17661 1.22071 0.93939 1.01856 0.98162 1.21646 0.94958 0.98484 0.85839 1.48076 1.41730 1.33864 1.08516 1.18426 0.78895 0.79211 0.88583 1.90747 1.62685 1.57607 1.33558 1.19919 1.02299 0.95295 0.93926 1.21034 0.95922 0.93243 0.97576 1.20929 0.97114 1.00854 0.90893 1.19868 0.98253 0.92006 0.94582 1.68809 1.08256 1.38446 1.00595 1.24976 0.93039 0.90446 0.99382 1.24915 0.92668 0.97199 0.94548 1.68728 1.08012 1.38052 1.02163 1.19463 1.01058 0.91216 0.95370 1.21351 0.94958 1.00309 0.90520 1.21989 0.95312 0.98671 0.84680 1.22285 0.94322 1.00374 0.99813 0.93234 0.94733 0.91142 0.80427 0.93845 0.89185 0.89410 0.88576 0.92188 0.82402 0.81242 0.75922 0.76800 0.84530 0.91990 0.89258 0.90453 0.92288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.63 8.44 71.98 0.61 -4.02 16 2 C 0.19 6.42 0.74 3.63 0.00 6.42 16 3 N -0.74 -31.10 3.93 -303.22 -1.19 -32.30 16 4 C -0.20 -10.43 9.16 84.04 0.77 -9.66 16 5 H 0.06 3.71 6.93 -2.91 -0.02 3.69 16 6 C -0.06 -3.41 5.50 84.86 0.47 -2.95 16 7 N -0.98 -61.49 13.97 21.65 0.30 -61.19 16 8 Si 0.94 44.58 27.73 68.60 1.90 46.48 16 9 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 10 H -0.30 -15.08 7.11 99.48 0.71 -14.37 16 11 H -0.25 -10.77 6.52 99.48 0.65 -10.12 16 12 C -0.12 -3.28 4.96 30.67 0.15 -3.13 16 13 C 0.11 3.27 6.16 86.36 0.53 3.80 16 14 N -0.59 -17.69 2.97 -821.43 -2.44 -20.13 16 15 C 0.56 16.88 7.28 86.79 0.63 17.51 16 16 O -0.57 -19.47 16.36 -3.90 -0.06 -19.53 16 17 C -0.11 -2.88 5.07 -20.11 -0.10 -2.98 16 18 C -0.06 -1.22 9.54 22.27 0.21 -1.01 16 19 C -0.08 -1.54 9.95 22.29 0.22 -1.31 16 20 C 0.08 1.73 6.59 40.32 0.27 2.00 16 21 N -0.45 -8.75 10.46 -187.89 -1.96 -10.72 16 22 C 0.10 1.26 11.21 85.14 0.95 2.21 16 23 C 0.08 1.28 11.22 85.14 0.95 2.23 16 24 N -0.46 -11.39 10.46 -188.11 -1.97 -13.35 16 25 C 0.05 1.34 6.58 40.25 0.27 1.60 16 26 C -0.05 -1.41 7.35 22.85 0.17 -1.24 16 27 C 0.12 3.64 4.69 86.51 0.41 4.05 16 28 C -0.13 -4.07 4.72 30.82 0.15 -3.92 16 29 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.03 1.28 7.27 -2.39 -0.02 1.26 16 31 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.36 15.02 4.33 -92.71 -0.40 14.62 16 33 H 0.25 15.31 8.31 -92.71 -0.77 14.53 16 34 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 36 H 0.10 2.68 7.00 -2.39 -0.02 2.67 16 37 H 0.06 1.87 6.95 -2.39 -0.02 1.86 16 38 H 0.16 2.83 8.06 -2.92 -0.02 2.81 16 39 H 0.17 2.36 8.06 -2.91 -0.02 2.34 16 40 H 0.22 0.56 8.06 -2.91 -0.02 0.53 16 41 H 0.22 1.40 8.06 -2.91 -0.02 1.38 16 42 H 0.14 4.06 6.73 -2.91 -0.02 4.04 16 43 H 0.06 2.33 7.73 -2.39 -0.02 2.31 16 44 H 0.09 2.60 4.83 -2.39 -0.01 2.58 16 45 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 46 H 0.06 2.15 7.31 -2.39 -0.02 2.14 16 Total: -1.00 -73.89 366.10 1.80 -72.09 By element: Atomic # 1 Polarization: 28.49 SS G_CDS: 0.56 Total: 29.05 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: 6.66 Total: 9.59 kcal Atomic # 7 Polarization: -130.43 SS G_CDS: -7.26 Total: -137.68 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.06 Total: -19.53 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.90 Total: 46.48 kcal Total: -73.89 1.80 -72.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484929164.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.013 kcal (2) G-P(sol) polarization free energy of solvation -73.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds