Wall clock time and date at job start Tue Mar 31 2020 23:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39872 * 125.89613 * 2 1 4 4 C 1.35314 * 107.91954 * 180.14407 * 3 2 1 5 5 C 1.50703 * 126.12759 * 179.90471 * 4 3 2 6 6 N 1.34949 * 107.74826 * 359.63758 * 4 3 2 7 7 C 1.46492 * 126.04227 * 180.20931 * 6 4 3 8 8 C 1.53001 * 109.47510 * 89.99746 * 7 6 4 9 9 N 1.46892 * 109.47455 * 180.02562 * 8 7 6 10 10 C 1.46899 * 111.00132 * 66.04607 * 9 8 7 11 11 C 1.46903 * 111.00198 * 190.00330 * 9 8 7 12 12 C 1.52995 * 109.47498 * 169.99988 * 11 9 8 13 13 N 1.46496 * 109.47320 * 179.97438 * 12 11 9 14 14 C 1.34773 * 120.00165 * 179.97438 * 13 12 11 15 15 O 1.21280 * 120.00052 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00205 * 180.02562 * 14 13 12 17 17 S 1.81001 * 109.47255 * 180.02562 * 16 14 13 18 18 C 1.76205 * 100.00156 * 179.97438 * 17 16 14 19 19 H 1.08003 * 119.99710 * 0.02562 * 18 17 16 20 20 C 1.38797 * 120.00126 * 179.97438 * 18 17 16 21 21 N 1.31626 * 119.99958 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 120.00062 * 0.02562 * 20 18 17 23 23 H 1.48494 * 109.47391 * 89.99259 * 22 20 18 24 24 H 1.48499 * 109.47205 * 209.99926 * 22 20 18 25 25 H 1.48506 * 109.46753 * 329.99533 * 22 20 18 26 26 N 1.30835 * 125.89924 * 179.73974 * 2 1 3 27 27 H 1.08996 * 109.47154 * 270.23207 * 1 2 3 28 28 H 1.09001 * 109.47360 * 30.23828 * 1 2 3 29 29 H 1.08999 * 109.46997 * 150.23794 * 1 2 3 30 30 H 1.08000 * 126.03890 * 0.02562 * 3 2 1 31 31 H 1.09002 * 109.47152 * 269.68517 * 5 4 3 32 32 H 1.09001 * 109.46980 * 149.68618 * 5 4 3 33 33 H 1.09004 * 109.47113 * 29.68598 * 5 4 3 34 34 H 1.09001 * 109.47504 * 210.00369 * 7 6 4 35 35 H 1.09010 * 109.47188 * 330.00050 * 7 6 4 36 36 H 1.09001 * 109.47246 * 300.00781 * 8 7 6 37 37 H 1.09010 * 109.46647 * 59.99972 * 8 7 6 38 38 H 1.08999 * 109.46774 * 60.00140 * 10 9 8 39 39 H 1.09007 * 109.47197 * 179.97438 * 10 9 8 40 40 H 1.08996 * 109.47323 * 299.99979 * 10 9 8 41 41 H 1.09006 * 109.46915 * 290.00017 * 11 9 8 42 42 H 1.09002 * 109.46986 * 49.99729 * 11 9 8 43 43 H 1.09006 * 109.47061 * 299.99940 * 12 11 9 44 44 H 1.09002 * 109.47213 * 59.99881 * 12 11 9 45 45 H 0.97002 * 119.99903 * 359.97438 * 13 12 11 46 46 H 1.09006 * 109.47282 * 299.99680 * 16 14 13 47 47 H 1.08997 * 109.47356 * 60.00265 * 16 14 13 48 48 H 0.96997 * 119.99998 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6142 0.7155 -0.0032 5 6 4.8350 1.5991 -0.0064 6 7 3.6088 -0.6340 0.0029 7 6 4.7899 -1.5006 0.0065 8 6 5.2017 -1.7958 1.4502 9 7 6.3864 -2.6643 1.4537 10 6 7.5518 -1.9673 0.8935 11 6 6.6705 -3.1616 2.8064 12 6 7.7450 -4.2485 2.7351 13 7 8.0288 -4.7440 4.0842 14 6 8.9484 -5.7121 4.2669 15 8 9.5414 -6.1728 3.3145 16 6 9.2399 -6.2223 5.6546 17 16 10.5112 -7.5079 5.5701 18 6 10.6517 -7.9121 7.2795 19 1 10.0406 -7.3994 8.0076 20 6 11.5471 -8.8899 7.6901 21 7 11.6524 -9.1914 8.9670 22 14 12.6036 -9.7772 6.4306 23 1 13.8785 -9.0386 6.2456 24 1 12.8932 -11.1530 6.9086 25 1 11.8786 -9.8452 5.1363 26 7 2.2742 -1.0598 0.0048 27 1 -0.3633 0.0042 1.0276 28 1 -0.3634 0.8878 -0.5175 29 1 -0.3633 -0.8921 -0.5101 30 1 1.9922 2.1598 0.0004 31 1 5.1300 1.8074 -1.0349 32 1 5.6508 1.0934 0.5102 33 1 4.6072 2.5354 0.5030 34 1 4.5563 -2.4354 -0.5031 35 1 5.6093 -1.0003 -0.5100 36 1 5.4354 -0.8610 1.9597 37 1 4.3824 -2.2961 1.9666 38 1 7.7665 -1.0808 1.4903 39 1 8.4150 -2.6328 0.9084 40 1 7.3388 -1.6709 -0.1336 41 1 7.0256 -2.3400 3.4285 42 1 5.7607 -3.5780 3.2390 43 1 7.3899 -5.0701 2.1130 44 1 8.6548 -3.8321 2.3025 45 1 7.5547 -4.3753 4.8459 46 1 9.5954 -5.4007 6.2766 47 1 8.3301 -6.6384 6.0873 48 1 12.2784 -9.8746 9.2540 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001492195519.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:40 Heat of formation + Delta-G solvation = 38.827292 kcal Electronic energy + Delta-G solvation = -25669.925050 eV Core-core repulsion = 21887.858997 eV Total energy + Delta-G solvation = -3782.066053 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.69246 -39.46332 -38.36844 -35.19450 -34.19259 -32.58919 -32.44760 -31.05758 -30.00670 -28.28945 -27.91987 -27.40861 -25.75969 -25.50638 -22.79726 -21.48532 -20.77990 -20.49726 -19.66727 -17.88764 -17.30934 -16.53296 -16.41791 -16.25308 -15.76296 -15.54033 -15.07660 -14.93314 -14.73358 -14.50262 -14.21194 -13.98536 -13.77394 -13.73307 -13.39555 -13.33700 -13.20786 -13.14397 -12.87354 -12.80408 -12.42900 -12.38017 -12.26416 -12.15286 -11.79100 -11.59159 -11.40321 -11.27176 -11.01385 -10.85176 -10.62017 -9.86826 -9.57843 -9.44709 -9.03927 -8.99404 -8.98136 -8.85456 -8.51264 -6.92897 -6.29743 -4.01674 1.44245 1.99362 2.39466 2.70810 2.95161 3.14103 3.32487 3.49526 3.51056 3.79454 4.00897 4.15529 4.28990 4.32565 4.44522 4.46315 4.55570 4.67087 4.72542 4.77903 4.89901 4.90824 4.93057 4.97878 5.09406 5.10659 5.15532 5.18059 5.23233 5.26788 5.29199 5.34156 5.46786 5.47995 5.52366 5.64147 5.75615 5.79483 5.81144 5.99427 6.30139 6.33939 6.40176 6.53234 6.65696 7.38912 7.55791 7.93261 8.40608 8.45873 9.16458 10.79484 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.030963 B = 0.001448 C = 0.001422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.088774 B =19336.520732 C =19687.029256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.072 3.928 3 C -0.274 4.274 4 C 0.084 3.916 5 C -0.094 4.094 6 N -0.368 5.368 7 C 0.135 3.865 8 C 0.043 3.957 9 N -0.534 5.534 10 C 0.011 3.989 11 C 0.047 3.953 12 C 0.124 3.876 13 N -0.738 5.738 14 C 0.532 3.468 15 O -0.518 6.518 16 C -0.124 4.124 17 S -0.141 6.141 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 N -0.293 5.293 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.145 0.855 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.041 0.959 37 H 0.086 0.914 38 H 0.031 0.969 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.044 0.956 42 H 0.084 0.916 43 H 0.076 0.924 44 H 0.067 0.933 45 H 0.399 0.601 46 H 0.097 0.903 47 H 0.098 0.902 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.763 25.179 -18.720 36.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.095 4.095 3 C -0.303 4.303 4 C -0.043 4.043 5 C -0.152 4.152 6 N -0.151 5.151 7 C 0.013 3.987 8 C -0.086 4.086 9 N -0.259 5.259 10 C -0.137 4.137 11 C -0.081 4.081 12 C 0.000 4.000 13 N -0.393 5.393 14 C 0.318 3.682 15 O -0.392 6.392 16 C -0.275 4.275 17 S 0.085 5.915 18 C -0.670 4.670 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 N -0.115 5.115 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.163 0.837 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.105 0.895 34 H 0.124 0.876 35 H 0.111 0.889 36 H 0.059 0.941 37 H 0.104 0.896 38 H 0.049 0.951 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.062 0.938 42 H 0.102 0.898 43 H 0.095 0.905 44 H 0.085 0.915 45 H 0.232 0.768 46 H 0.115 0.885 47 H 0.116 0.884 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.613 22.522 -20.477 35.168 hybrid contribution -0.157 1.840 1.801 2.579 sum -17.770 24.362 -18.676 35.469 Atomic orbital electron populations 1.20176 0.86689 1.03270 1.02983 1.22347 0.96981 0.90786 0.99360 1.21126 0.90974 0.99778 1.18463 1.21125 0.97358 0.84716 1.01100 1.20477 0.93013 0.98311 1.03427 1.48500 1.05312 1.03931 1.57345 1.21639 0.83656 0.95518 0.97846 1.22445 0.93911 0.96061 0.96189 1.61725 1.04246 1.37791 1.22098 1.22634 0.93561 0.97694 0.99816 1.22263 0.99669 0.97233 0.88967 1.21196 0.97576 0.96661 0.84566 1.45870 1.43153 1.41129 1.09140 1.20261 0.78435 0.78412 0.91135 1.90706 1.49021 1.56781 1.42700 1.23278 1.04779 1.03583 0.95835 1.84797 1.48733 1.44664 1.13317 1.22321 1.28304 1.26416 0.89945 0.89393 1.24708 0.95843 0.95450 0.95257 1.69936 1.36042 1.31424 1.14278 0.86735 0.82046 0.79715 0.83359 1.19210 1.19912 1.15909 1.77382 0.86194 1.22597 1.25364 0.90532 0.90485 0.90915 0.83696 0.90076 0.91245 0.89508 0.87587 0.88874 0.94121 0.89568 0.95090 0.90058 0.91046 0.93814 0.89806 0.90531 0.91485 0.76752 0.88504 0.88397 0.91933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.42 10.45 36.01 0.38 -0.04 16 2 C 0.07 0.65 7.22 -82.40 -0.59 0.05 16 3 C -0.27 -2.17 10.65 -40.01 -0.43 -2.60 16 4 C 0.08 0.63 6.93 -82.26 -0.57 0.06 16 5 C -0.09 -0.38 9.90 36.01 0.36 -0.02 16 6 N -0.37 -3.25 3.61 -57.14 -0.21 -3.46 16 7 C 0.14 0.92 5.99 -4.05 -0.02 0.89 16 8 C 0.04 0.30 5.28 -3.83 -0.02 0.28 16 9 N -0.53 -3.93 4.76 -242.92 -1.16 -5.09 16 10 C 0.01 0.07 9.13 60.06 0.55 0.61 16 11 C 0.05 0.37 5.07 -3.82 -0.02 0.35 16 12 C 0.12 1.34 5.60 -4.05 -0.02 1.32 16 13 N -0.74 -9.06 5.56 -60.30 -0.33 -9.39 16 14 C 0.53 9.33 7.85 -10.99 -0.09 9.24 16 15 O -0.52 -11.14 15.86 5.56 0.09 -11.05 16 16 C -0.12 -2.37 6.16 36.00 0.22 -2.15 16 17 S -0.14 -3.58 18.55 -107.50 -1.99 -5.58 16 18 C -0.52 -15.04 10.04 30.94 0.31 -14.73 16 19 H 0.09 2.63 8.03 -52.48 -0.42 2.21 16 20 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 21 N -0.88 -26.54 13.97 55.49 0.78 -25.76 16 22 Si 0.86 21.78 27.74 -169.99 -4.72 17.06 16 23 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 26 N -0.29 -3.20 12.58 33.67 0.42 -2.78 16 27 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.15 0.83 8.06 -52.49 -0.42 0.41 16 31 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.24 7.72 -51.93 -0.40 -0.16 16 33 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.09 0.45 6.07 -51.92 -0.32 0.14 16 36 H 0.04 0.27 8.12 -51.93 -0.42 -0.15 16 37 H 0.09 0.71 7.93 -51.92 -0.41 0.30 16 38 H 0.03 0.17 8.14 -51.93 -0.42 -0.25 16 39 H 0.08 0.57 6.30 -51.92 -0.33 0.25 16 40 H 0.07 0.34 6.47 -51.93 -0.34 0.00 16 41 H 0.04 0.31 8.12 -51.93 -0.42 -0.11 16 42 H 0.08 0.63 7.93 -51.93 -0.41 0.22 16 43 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.07 0.77 6.47 -51.93 -0.34 0.43 16 45 H 0.40 3.70 8.47 -40.82 -0.35 3.35 16 46 H 0.10 1.71 8.14 -51.91 -0.42 1.29 16 47 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 48 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 408.77 15.07 6.16 6.16 Total: -1.00 -36.29 408.77 -8.96 -45.25 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -7.96 Total: -1.34 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -0.05 Total: -4.02 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: -0.50 Total: -46.48 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.09 Total: -11.05 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.72 Total: 17.06 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -1.99 Total: -5.58 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -36.29 -8.96 -45.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492195519.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.077 kcal (2) G-P(sol) polarization free energy of solvation -36.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds