Wall clock time and date at job start Tue Mar 31 2020 23:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39872 * 125.89613 * 2 1 4 4 C 1.35314 * 107.91954 * 180.14407 * 3 2 1 5 5 C 1.50703 * 126.12759 * 179.90471 * 4 3 2 6 6 N 1.34949 * 107.74826 * 359.63758 * 4 3 2 7 7 C 1.46492 * 126.04227 * 180.20931 * 6 4 3 8 8 C 1.53001 * 109.47510 * 89.99746 * 7 6 4 9 9 N 1.46892 * 109.47455 * 180.02562 * 8 7 6 10 10 C 1.46899 * 111.00132 * 66.04607 * 9 8 7 11 11 C 1.46903 * 111.00198 * 190.00330 * 9 8 7 12 12 C 1.52995 * 109.47498 * 169.99988 * 11 9 8 13 13 N 1.46496 * 109.47320 * 179.97438 * 12 11 9 14 14 C 1.34773 * 120.00165 * 179.97438 * 13 12 11 15 15 O 1.21280 * 120.00052 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00205 * 180.02562 * 14 13 12 17 17 S 1.81001 * 109.47255 * 180.02562 * 16 14 13 18 18 C 1.76205 * 100.00156 * 179.97438 * 17 16 14 19 19 H 1.08003 * 119.99710 * 0.02562 * 18 17 16 20 20 C 1.38797 * 120.00126 * 179.97438 * 18 17 16 21 21 N 1.31626 * 119.99958 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 120.00062 * 0.02562 * 20 18 17 23 23 H 1.48494 * 109.47391 * 89.99259 * 22 20 18 24 24 H 1.48499 * 109.47205 * 209.99926 * 22 20 18 25 25 H 1.48506 * 109.46753 * 329.99533 * 22 20 18 26 26 N 1.30835 * 125.89924 * 179.73974 * 2 1 3 27 27 H 1.08996 * 109.47154 * 270.23207 * 1 2 3 28 28 H 1.09001 * 109.47360 * 30.23828 * 1 2 3 29 29 H 1.08999 * 109.46997 * 150.23794 * 1 2 3 30 30 H 1.08000 * 126.03890 * 0.02562 * 3 2 1 31 31 H 1.09002 * 109.47152 * 269.68517 * 5 4 3 32 32 H 1.09001 * 109.46980 * 149.68618 * 5 4 3 33 33 H 1.09004 * 109.47113 * 29.68598 * 5 4 3 34 34 H 1.09001 * 109.47504 * 210.00369 * 7 6 4 35 35 H 1.09010 * 109.47188 * 330.00050 * 7 6 4 36 36 H 1.09001 * 109.47246 * 300.00781 * 8 7 6 37 37 H 1.09010 * 109.46647 * 59.99972 * 8 7 6 38 38 H 1.08999 * 109.46774 * 60.00140 * 10 9 8 39 39 H 1.09007 * 109.47197 * 179.97438 * 10 9 8 40 40 H 1.08996 * 109.47323 * 299.99979 * 10 9 8 41 41 H 1.09006 * 109.46915 * 290.00017 * 11 9 8 42 42 H 1.09002 * 109.46986 * 49.99729 * 11 9 8 43 43 H 1.09006 * 109.47061 * 299.99940 * 12 11 9 44 44 H 1.09002 * 109.47213 * 59.99881 * 12 11 9 45 45 H 0.97002 * 119.99903 * 359.97438 * 13 12 11 46 46 H 1.09006 * 109.47282 * 299.99680 * 16 14 13 47 47 H 1.08997 * 109.47356 * 60.00265 * 16 14 13 48 48 H 0.96997 * 119.99998 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6142 0.7155 -0.0032 5 6 4.8350 1.5991 -0.0064 6 7 3.6088 -0.6340 0.0029 7 6 4.7899 -1.5006 0.0065 8 6 5.2017 -1.7958 1.4502 9 7 6.3864 -2.6643 1.4537 10 6 7.5518 -1.9673 0.8935 11 6 6.6705 -3.1616 2.8064 12 6 7.7450 -4.2485 2.7351 13 7 8.0288 -4.7440 4.0842 14 6 8.9484 -5.7121 4.2669 15 8 9.5414 -6.1728 3.3145 16 6 9.2399 -6.2223 5.6546 17 16 10.5112 -7.5079 5.5701 18 6 10.6517 -7.9121 7.2795 19 1 10.0406 -7.3994 8.0076 20 6 11.5471 -8.8899 7.6901 21 7 11.6524 -9.1914 8.9670 22 14 12.6036 -9.7772 6.4306 23 1 13.8785 -9.0386 6.2456 24 1 12.8932 -11.1530 6.9086 25 1 11.8786 -9.8452 5.1363 26 7 2.2742 -1.0598 0.0048 27 1 -0.3633 0.0042 1.0276 28 1 -0.3634 0.8878 -0.5175 29 1 -0.3633 -0.8921 -0.5101 30 1 1.9922 2.1598 0.0004 31 1 5.1300 1.8074 -1.0349 32 1 5.6508 1.0934 0.5102 33 1 4.6072 2.5354 0.5030 34 1 4.5563 -2.4354 -0.5031 35 1 5.6093 -1.0003 -0.5100 36 1 5.4354 -0.8610 1.9597 37 1 4.3824 -2.2961 1.9666 38 1 7.7665 -1.0808 1.4903 39 1 8.4150 -2.6328 0.9084 40 1 7.3388 -1.6709 -0.1336 41 1 7.0256 -2.3400 3.4285 42 1 5.7607 -3.5780 3.2390 43 1 7.3899 -5.0701 2.1130 44 1 8.6548 -3.8321 2.3025 45 1 7.5547 -4.3753 4.8459 46 1 9.5954 -5.4007 6.2766 47 1 8.3301 -6.6384 6.0873 48 1 12.2784 -9.8746 9.2540 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001492195519.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:39 Heat of formation + Delta-G solvation = 12.318024 kcal Electronic energy + Delta-G solvation = -25671.074578 eV Core-core repulsion = 21887.858997 eV Total energy + Delta-G solvation = -3783.215581 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.25490 -40.72924 -39.09236 -36.12696 -34.97402 -34.67528 -33.09850 -31.97049 -30.93909 -29.23170 -28.42120 -27.88103 -27.84749 -26.32951 -23.50091 -22.18954 -21.75581 -21.33443 -20.21415 -19.87887 -18.04714 -17.72385 -17.45131 -17.08094 -17.03939 -16.55030 -16.40563 -16.05674 -15.64249 -15.23650 -15.23098 -14.91388 -14.78679 -14.64912 -14.47716 -14.13056 -13.96838 -13.73980 -13.66162 -13.56763 -13.34876 -13.23443 -13.03905 -13.00166 -12.86709 -12.71036 -12.66878 -12.43945 -12.19248 -12.11002 -11.86893 -11.43381 -11.17396 -11.07042 -10.54223 -10.16676 -10.04498 -9.54258 -9.41602 -9.00208 -8.51938 -6.22943 0.87438 0.98123 1.31246 1.43342 1.48385 1.54291 1.56610 1.82119 2.13674 2.25108 2.68911 2.86475 2.99241 3.50099 3.70142 3.74803 3.76983 3.91251 3.95176 4.01116 4.15037 4.22580 4.23759 4.35335 4.46295 4.47163 4.49442 4.52996 4.64365 4.67584 4.70877 4.79142 4.81968 4.82277 4.89959 4.96822 5.03745 5.06251 5.09607 5.32524 5.33934 5.70241 5.75373 5.81843 5.89189 6.10917 6.15302 6.43018 6.79657 6.93347 7.16537 8.60420 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.030963 B = 0.001448 C = 0.001422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.088774 B =19336.520732 C =19687.029256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.059 3.941 3 C -0.292 4.292 4 C 0.083 3.917 5 C -0.092 4.092 6 N -0.376 5.376 7 C 0.136 3.864 8 C 0.055 3.945 9 N -0.544 5.544 10 C 0.010 3.990 11 C 0.057 3.943 12 C 0.128 3.872 13 N -0.712 5.712 14 C 0.536 3.464 15 O -0.562 6.562 16 C -0.111 4.111 17 S -0.176 6.176 18 C -0.530 4.530 19 H 0.063 0.937 20 C 0.047 3.953 21 N -0.917 5.917 22 Si 0.914 3.086 23 H -0.262 1.262 24 H -0.259 1.259 25 H -0.237 1.237 26 N -0.342 5.342 27 H 0.083 0.917 28 H 0.096 0.904 29 H 0.068 0.932 30 H 0.164 0.836 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.116 0.884 36 H 0.048 0.952 37 H 0.069 0.931 38 H 0.041 0.959 39 H 0.070 0.930 40 H 0.086 0.914 41 H 0.058 0.942 42 H 0.088 0.912 43 H 0.060 0.940 44 H 0.064 0.936 45 H 0.417 0.583 46 H 0.115 0.885 47 H 0.114 0.886 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.029 27.282 -19.764 38.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.107 4.107 3 C -0.321 4.321 4 C -0.044 4.044 5 C -0.150 4.150 6 N -0.159 5.159 7 C 0.015 3.985 8 C -0.074 4.074 9 N -0.269 5.269 10 C -0.138 4.138 11 C -0.072 4.072 12 C 0.003 3.997 13 N -0.366 5.366 14 C 0.321 3.679 15 O -0.441 6.441 16 C -0.262 4.262 17 S 0.050 5.950 18 C -0.678 4.678 19 H 0.081 0.919 20 C -0.159 4.159 21 N -0.555 5.555 22 Si 0.736 3.264 23 H -0.186 1.186 24 H -0.183 1.183 25 H -0.161 1.161 26 N -0.165 5.165 27 H 0.102 0.898 28 H 0.114 0.886 29 H 0.087 0.913 30 H 0.181 0.819 31 H 0.112 0.888 32 H 0.096 0.904 33 H 0.118 0.882 34 H 0.111 0.889 35 H 0.134 0.866 36 H 0.067 0.933 37 H 0.088 0.912 38 H 0.060 0.940 39 H 0.089 0.911 40 H 0.105 0.895 41 H 0.076 0.924 42 H 0.106 0.894 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.254 0.746 46 H 0.133 0.867 47 H 0.132 0.868 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -17.924 24.665 -21.502 37.309 hybrid contribution -0.198 1.333 2.118 2.510 sum -18.123 25.998 -19.384 37.149 Atomic orbital electron populations 1.20274 0.85061 1.03998 1.03665 1.22903 0.98305 0.90916 0.98538 1.21479 0.91208 1.00438 1.18961 1.21741 0.98617 0.84516 0.99562 1.20605 0.91656 0.98168 1.04562 1.48649 1.05024 1.04692 1.57563 1.21697 0.83763 0.95219 0.97845 1.22279 0.93037 0.95912 0.96147 1.61674 1.04904 1.38517 1.21816 1.22676 0.92582 0.97664 1.00865 1.22133 0.98727 0.96638 0.89679 1.21248 0.98440 0.96944 0.83020 1.45607 1.41173 1.39080 1.10783 1.19936 0.79082 0.79153 0.89683 1.90696 1.51118 1.58690 1.43547 1.23269 1.03172 1.02055 0.97722 1.84728 1.51860 1.47749 1.10656 1.22469 1.27735 1.26133 0.91429 0.91917 1.25550 0.97072 0.96255 0.96990 1.70013 1.37123 1.32385 1.15941 0.85871 0.80379 0.79254 0.80899 1.18627 1.18339 1.16142 1.77312 0.87518 1.24145 1.27478 0.89795 0.88559 0.91346 0.81874 0.88793 0.90382 0.88167 0.88889 0.86630 0.93347 0.91237 0.94031 0.91131 0.89547 0.92369 0.89354 0.92148 0.91777 0.74585 0.86650 0.86760 0.91364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.79 10.45 71.24 0.74 -0.04 16 2 C 0.06 1.05 7.22 43.10 0.31 1.36 16 3 C -0.29 -4.27 10.65 21.99 0.23 -4.04 16 4 C 0.08 1.12 6.93 41.41 0.29 1.40 16 5 C -0.09 -0.48 9.90 71.24 0.71 0.23 16 6 N -0.38 -6.34 3.61 -334.70 -1.21 -7.55 16 7 C 0.14 1.68 5.99 86.38 0.52 2.20 16 8 C 0.06 0.67 5.28 86.30 0.46 1.13 16 9 N -0.54 -7.01 4.76 -922.45 -4.39 -11.40 16 10 C 0.01 0.10 9.13 127.69 1.17 1.26 16 11 C 0.06 0.76 5.07 86.30 0.44 1.19 16 12 C 0.13 2.54 5.60 86.38 0.48 3.02 16 13 N -0.71 -15.94 5.56 -463.08 -2.57 -18.51 16 14 C 0.54 18.03 7.85 87.66 0.69 18.72 16 15 O -0.56 -23.88 15.86 -3.03 -0.05 -23.93 16 16 C -0.11 -4.10 6.16 71.24 0.44 -3.66 16 17 S -0.18 -8.88 18.55 -56.49 -1.05 -9.93 16 18 C -0.53 -30.78 10.04 67.95 0.68 -30.10 16 19 H 0.06 3.83 8.03 -2.91 -0.02 3.81 16 20 C 0.05 2.74 5.50 84.86 0.47 3.21 16 21 N -0.92 -55.72 13.97 21.65 0.30 -55.42 16 22 Si 0.91 44.95 27.74 68.60 1.90 46.85 16 23 H -0.26 -12.52 7.11 99.48 0.71 -11.82 16 24 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 25 H -0.24 -11.69 6.74 99.48 0.67 -11.02 16 26 N -0.34 -7.51 12.58 -47.38 -0.60 -8.11 16 27 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.10 0.63 8.14 -2.39 -0.02 0.62 16 29 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 31 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.08 0.29 7.72 -2.39 -0.02 0.27 16 33 H 0.10 0.28 8.14 -2.38 -0.02 0.26 16 34 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.12 0.85 6.07 -2.38 -0.01 0.84 16 36 H 0.05 0.52 8.12 -2.39 -0.02 0.50 16 37 H 0.07 1.09 7.93 -2.38 -0.02 1.07 16 38 H 0.04 0.34 8.14 -2.39 -0.02 0.32 16 39 H 0.07 0.88 6.30 -2.38 -0.02 0.86 16 40 H 0.09 0.59 6.47 -2.39 -0.02 0.57 16 41 H 0.06 0.64 8.12 -2.38 -0.02 0.62 16 42 H 0.09 1.13 7.93 -2.39 -0.02 1.11 16 43 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 44 H 0.06 1.37 6.47 -2.39 -0.02 1.35 16 45 H 0.42 6.47 8.47 -92.71 -0.79 5.68 16 46 H 0.12 3.85 8.14 -2.39 -0.02 3.83 16 47 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 48 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -79.81 408.77 0.09 -79.73 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 0.13 Total: 12.40 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: 7.62 Total: -4.13 kcal Atomic # 7 Polarization: -92.53 SS G_CDS: -8.47 Total: -100.99 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -0.05 Total: -23.93 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.90 Total: 46.85 kcal Atomic # 16 Polarization: -8.88 SS G_CDS: -1.05 Total: -9.93 kcal Total: -79.81 0.09 -79.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492195519.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.045 kcal (2) G-P(sol) polarization free energy of solvation -79.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds