Wall clock time and date at job start Tue Mar 31 2020 23:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34261 * 119.37533 * 2 1 4 4 C 1.47344 * 118.57514 * 179.97438 * 3 2 1 5 5 N 1.31743 * 121.17227 * 180.27196 * 4 3 2 6 6 N 1.40099 * 119.99783 * 179.71453 * 5 4 3 7 7 C 1.34777 * 120.00040 * 180.02562 * 6 5 4 8 8 O 1.21684 * 120.00183 * 180.02562 * 7 6 5 9 9 N 1.34775 * 120.00089 * 0.02562 * 7 6 5 10 10 C 1.46498 * 120.00077 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.47174 * 35.00944 * 10 9 7 12 12 C 1.53004 * 109.47017 * 155.00148 * 10 9 7 13 13 C 1.50706 * 109.47166 * 295.00524 * 12 10 9 14 14 H 1.07998 * 119.99936 * 359.97438 * 13 12 10 15 15 C 1.37877 * 119.99832 * 179.97438 * 13 12 10 16 16 N 1.31511 * 120.00248 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99745 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47324 * 59.99802 * 17 15 13 19 19 H 1.48501 * 109.47219 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47056 * 299.99826 * 17 15 13 21 21 C 1.50701 * 109.47503 * 275.00028 * 10 9 7 22 22 C 1.38231 * 119.99829 * 319.72840 * 21 10 9 23 23 C 1.38237 * 119.99976 * 179.78602 * 22 21 10 24 24 C 1.38243 * 119.99687 * 0.44102 * 23 22 21 25 25 C 1.38232 * 119.99734 * 359.81312 * 24 23 22 26 26 C 1.38230 * 119.99789 * 139.99913 * 21 10 9 27 27 C 1.47346 * 117.65061 * 0.02562 * 4 3 2 28 28 C 1.34257 * 118.57365 * 359.97438 * 27 4 3 29 29 N 1.36706 * 119.38046 * 180.02562 * 2 1 3 30 30 H 0.97009 * 118.64458 * 359.97318 * 29 2 1 31 31 H 1.08994 * 109.47308 * 269.99741 * 1 2 3 32 32 H 1.08999 * 109.47095 * 29.99908 * 1 2 3 33 33 H 1.09007 * 109.46839 * 149.99881 * 1 2 3 34 34 H 1.08007 * 120.70921 * 0.02562 * 3 2 1 35 35 H 0.97004 * 119.99910 * 0.02562 * 6 5 4 36 36 H 0.97003 * 119.99851 * 0.02562 * 9 7 6 37 37 H 1.09009 * 109.47192 * 55.00035 * 12 10 9 38 38 H 1.08997 * 109.47250 * 175.00599 * 12 10 9 39 39 H 0.97000 * 119.99765 * 179.97438 * 16 15 13 40 40 H 1.07997 * 119.99999 * 0.02562 * 22 21 10 41 41 H 1.07998 * 120.00527 * 180.27946 * 23 22 21 42 42 H 1.08000 * 119.99584 * 179.83382 * 24 23 22 43 43 H 1.07999 * 119.99713 * 180.02562 * 25 24 23 44 44 H 1.07998 * 120.00259 * 359.97438 * 26 21 10 45 45 H 1.08000 * 120.71369 * 180.02562 * 27 4 3 46 46 H 1.07993 * 119.37736 * 180.02562 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1656 1.1700 0.0000 4 6 3.6389 1.1494 0.0006 5 7 4.3365 2.2670 0.0060 6 7 5.7366 2.2187 0.0124 7 6 6.4503 3.3620 0.0184 8 8 7.6664 3.3200 0.0236 9 7 5.8171 4.5517 0.0188 10 6 6.5929 5.7944 0.0259 11 1 7.5021 5.6585 -0.5598 12 6 5.7568 6.9210 -0.5845 13 6 5.4960 6.6220 -2.0384 14 1 5.8878 5.7190 -2.4827 15 6 4.7572 7.5013 -2.8013 16 7 4.2797 8.6007 -2.2602 17 14 4.4346 7.1310 -4.6036 18 1 3.6974 5.8473 -4.7210 19 1 3.6230 8.2244 -5.1961 20 1 5.7275 7.0273 -5.3268 21 6 6.9573 6.1511 1.4440 22 6 6.0353 5.9773 2.4591 23 6 6.3710 6.3003 3.7606 24 6 7.6258 6.8057 4.0455 25 6 8.5460 6.9843 3.0296 26 6 8.2117 6.6572 1.7288 27 6 4.3044 -0.1652 0.0005 28 6 3.5425 -1.2706 0.0005 29 7 2.1777 -1.1912 -0.0005 30 1 1.6640 -2.0141 -0.0005 31 1 -0.3633 0.0000 1.0276 32 1 -0.3633 0.8900 -0.5138 33 1 -0.3633 -0.8900 -0.5139 34 1 1.6269 2.1061 0.0004 35 1 6.1924 1.3624 0.0126 36 1 4.8476 4.5851 0.0150 37 1 4.8078 6.9980 -0.0536 38 1 6.2985 7.8629 -0.4989 39 1 3.7603 9.2195 -2.7971 40 1 5.0539 5.5856 2.2360 41 1 5.6522 6.1603 4.5544 42 1 7.8872 7.0605 5.0620 43 1 9.5264 7.3787 3.2523 44 1 8.9307 6.7967 0.9351 45 1 5.3819 -0.2380 0.0014 46 1 4.0167 -2.2409 0.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001564398842.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:15 Heat of formation + Delta-G solvation = 61.426010 kcal Electronic energy + Delta-G solvation = -28543.322451 eV Core-core repulsion = 24626.792400 eV Total energy + Delta-G solvation = -3916.530051 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.15278 -39.50852 -38.40056 -36.15717 -34.96384 -33.29431 -32.67455 -32.35834 -30.61631 -30.25178 -29.01763 -28.52572 -27.52438 -24.73156 -23.09093 -22.16172 -21.92124 -21.78541 -20.64516 -19.41503 -18.70787 -17.76118 -17.48977 -16.55277 -16.00280 -15.96516 -15.23998 -15.02667 -14.90008 -14.75371 -14.43063 -14.32748 -13.95154 -13.75185 -13.19812 -13.12177 -13.07216 -12.88669 -12.67806 -12.62112 -12.36582 -11.98432 -11.95010 -11.93006 -11.39615 -11.00359 -10.79112 -10.59612 -10.51761 -10.31108 -9.90673 -9.68667 -9.64954 -9.61604 -9.38060 -9.15826 -8.39627 -8.32253 -8.17252 -8.03264 -6.96554 -5.95714 -3.97394 1.33444 1.38615 1.92580 1.95023 2.79654 3.07201 3.38600 3.39721 3.41680 3.46388 4.00910 4.13585 4.29851 4.41775 4.51900 4.59359 4.76684 4.93660 5.09926 5.19128 5.38820 5.40746 5.41638 5.43702 5.50175 5.53735 5.69875 5.78615 6.03023 6.06882 6.08587 6.16610 6.33326 6.37801 6.51203 6.59380 6.75222 6.88757 6.98403 6.99828 7.06546 7.15171 7.31396 7.41000 7.55541 7.65325 7.78777 8.01839 8.04077 8.41401 8.87841 9.07681 9.30510 9.66305 11.15099 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007158 B = 0.003795 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3910.838901 B = 7376.049516 C = 9890.569943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.132 3.868 3 C -0.169 4.169 4 C 0.168 3.832 5 N -0.284 5.284 6 N -0.588 5.588 7 C 0.727 3.273 8 O -0.601 6.601 9 N -0.696 5.696 10 C 0.197 3.803 11 H 0.085 0.915 12 C 0.025 3.975 13 C -0.514 4.514 14 H 0.057 0.943 15 C 0.060 3.940 16 N -0.894 5.894 17 Si 0.891 3.109 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.278 1.278 21 C -0.070 4.070 22 C -0.104 4.104 23 C -0.126 4.126 24 C -0.137 4.137 25 C -0.125 4.125 26 C -0.108 4.108 27 C -0.252 4.252 28 C 0.131 3.869 29 N -0.626 5.626 30 H 0.409 0.591 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.148 0.852 35 H 0.388 0.612 36 H 0.409 0.591 37 H 0.025 0.975 38 H 0.035 0.965 39 H 0.261 0.739 40 H 0.117 0.883 41 H 0.113 0.887 42 H 0.112 0.888 43 H 0.115 0.885 44 H 0.120 0.880 45 H 0.134 0.866 46 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.120 -20.105 9.189 23.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.025 3.975 3 C -0.197 4.197 4 C -0.014 4.014 5 N -0.097 5.097 6 N -0.335 5.335 7 C 0.427 3.573 8 O -0.479 6.479 9 N -0.349 5.349 10 C 0.092 3.908 11 H 0.103 0.897 12 C -0.012 4.012 13 C -0.552 4.552 14 H 0.075 0.925 15 C -0.141 4.141 16 N -0.534 5.534 17 Si 0.719 3.281 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.203 1.203 21 C -0.071 4.071 22 C -0.123 4.123 23 C -0.144 4.144 24 C -0.155 4.155 25 C -0.143 4.143 26 C -0.127 4.127 27 C -0.281 4.281 28 C 0.005 3.995 29 N -0.238 5.238 30 H 0.243 0.757 31 H 0.100 0.900 32 H 0.109 0.891 33 H 0.089 0.911 34 H 0.166 0.834 35 H 0.229 0.771 36 H 0.245 0.755 37 H 0.043 0.957 38 H 0.053 0.947 39 H 0.070 0.930 40 H 0.135 0.865 41 H 0.131 0.869 42 H 0.130 0.870 43 H 0.133 0.867 44 H 0.138 0.862 45 H 0.152 0.848 46 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -6.207 -18.598 9.133 21.629 hybrid contribution -0.347 -1.688 -1.039 2.012 sum -6.555 -20.286 8.094 22.803 Atomic orbital electron populations 1.20927 0.88435 1.04348 1.03697 1.19885 0.93960 0.85350 0.98286 1.21002 0.90107 0.97037 1.11526 1.21668 0.93528 0.88842 0.97344 1.75348 0.90086 1.23377 1.20939 1.46079 1.01797 1.07796 1.77822 1.15589 0.84204 0.80247 0.77246 1.90941 1.11192 1.85722 1.60006 1.45059 1.10759 1.03207 1.75842 1.20165 0.96338 0.84290 0.90038 0.89701 1.19384 0.94694 0.91682 0.95487 1.21108 1.33007 1.06426 0.94644 0.92507 1.24954 0.95800 0.95041 0.98286 1.69954 1.36081 1.11064 1.36258 0.86670 0.78269 0.77721 0.85421 1.20311 1.21385 1.20320 1.20625 0.93386 0.96268 0.96836 1.20937 0.99310 0.99654 0.92374 1.21029 0.96591 1.00371 0.96456 1.20967 0.94345 1.01582 0.98589 1.21016 0.99131 1.01004 0.93126 1.21016 0.96183 0.99025 0.96452 1.21945 0.99709 0.91935 1.14538 1.21288 0.82434 0.99673 0.96120 1.41172 1.05318 1.07802 1.69473 0.75722 0.89958 0.89101 0.91086 0.83433 0.77128 0.75475 0.95683 0.94729 0.92977 0.86493 0.86876 0.86974 0.86710 0.86194 0.84835 0.82742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.47 10.05 36.01 0.36 -0.11 16 2 C 0.13 0.96 6.82 -81.82 -0.56 0.40 16 3 C -0.17 -1.86 9.86 -37.28 -0.37 -2.22 16 4 C 0.17 2.30 7.09 -80.50 -0.57 1.73 16 5 N -0.28 -4.86 10.47 34.58 0.36 -4.49 16 6 N -0.59 -10.67 6.19 27.65 0.17 -10.50 16 7 C 0.73 15.77 8.64 -86.92 -0.75 15.02 16 8 O -0.60 -14.61 16.85 5.20 0.09 -14.52 16 9 N -0.70 -15.18 4.00 -59.79 -0.24 -15.42 16 10 C 0.20 4.51 2.11 -69.08 -0.15 4.36 16 11 H 0.08 2.09 7.44 -51.93 -0.39 1.70 16 12 C 0.02 0.65 4.49 -27.88 -0.13 0.52 16 13 C -0.51 -14.58 8.84 -34.44 -0.30 -14.88 16 14 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 15 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 16 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 17 Si 0.89 22.18 29.54 -169.99 -5.02 17.16 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 C -0.07 -1.45 4.91 -104.63 -0.51 -1.96 16 22 C -0.10 -2.00 9.32 -39.58 -0.37 -2.36 16 23 C -0.13 -2.10 10.05 -39.58 -0.40 -2.50 16 24 C -0.14 -2.15 10.05 -39.58 -0.40 -2.54 16 25 C -0.12 -2.06 10.05 -39.58 -0.40 -2.46 16 26 C -0.11 -2.07 9.67 -39.59 -0.38 -2.45 16 27 C -0.25 -2.64 9.63 -37.28 -0.36 -3.00 16 28 C 0.13 0.87 11.15 -16.78 -0.19 0.68 16 29 N -0.63 -3.42 5.28 -9.22 -0.05 -3.47 16 30 H 0.41 0.79 8.74 -40.82 -0.36 0.43 16 31 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.09 0.38 8.06 -51.93 -0.42 -0.04 16 33 H 0.07 0.16 8.13 -51.93 -0.42 -0.26 16 34 H 0.15 1.58 8.06 -52.48 -0.42 1.16 16 35 H 0.39 6.16 6.66 -182.59 -1.22 4.94 16 36 H 0.41 8.86 7.64 -40.82 -0.31 8.54 16 37 H 0.02 0.68 8.14 -51.92 -0.42 0.25 16 38 H 0.03 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.12 2.19 7.73 -52.49 -0.41 1.79 16 41 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 42 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 43 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 44 H 0.12 2.19 8.04 -52.49 -0.42 1.77 16 45 H 0.13 1.33 6.38 -52.49 -0.34 1.00 16 46 H 0.16 0.44 8.06 -52.49 -0.42 0.02 16 LS Contribution 394.69 15.07 5.95 5.95 Total: -1.00 -36.94 394.69 -10.76 -47.71 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: -7.20 Total: 13.69 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -5.56 Total: -10.14 kcal Atomic # 7 Polarization: -60.82 SS G_CDS: 0.98 Total: -59.84 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: 0.09 Total: -14.52 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.94 -10.76 -47.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001564398842.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.133 kcal (2) G-P(sol) polarization free energy of solvation -36.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds