Wall clock time and date at job start Tue Mar 31 2020 23:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34261 * 119.37533 * 2 1 4 4 C 1.47344 * 118.57514 * 179.97438 * 3 2 1 5 5 N 1.31743 * 121.17227 * 180.27196 * 4 3 2 6 6 N 1.40099 * 119.99783 * 179.71453 * 5 4 3 7 7 C 1.34777 * 120.00040 * 180.02562 * 6 5 4 8 8 O 1.21684 * 120.00183 * 180.02562 * 7 6 5 9 9 N 1.34775 * 120.00089 * 0.02562 * 7 6 5 10 10 C 1.46498 * 120.00077 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.47174 * 35.00944 * 10 9 7 12 12 C 1.53004 * 109.47017 * 155.00148 * 10 9 7 13 13 C 1.50706 * 109.47166 * 295.00524 * 12 10 9 14 14 H 1.07998 * 119.99936 * 359.97438 * 13 12 10 15 15 C 1.37877 * 119.99832 * 179.97438 * 13 12 10 16 16 N 1.31511 * 120.00248 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99745 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47324 * 59.99802 * 17 15 13 19 19 H 1.48501 * 109.47219 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47056 * 299.99826 * 17 15 13 21 21 C 1.50701 * 109.47503 * 275.00028 * 10 9 7 22 22 C 1.38231 * 119.99829 * 319.72840 * 21 10 9 23 23 C 1.38237 * 119.99976 * 179.78602 * 22 21 10 24 24 C 1.38243 * 119.99687 * 0.44102 * 23 22 21 25 25 C 1.38232 * 119.99734 * 359.81312 * 24 23 22 26 26 C 1.38230 * 119.99789 * 139.99913 * 21 10 9 27 27 C 1.47346 * 117.65061 * 0.02562 * 4 3 2 28 28 C 1.34257 * 118.57365 * 359.97438 * 27 4 3 29 29 N 1.36706 * 119.38046 * 180.02562 * 2 1 3 30 30 H 0.97009 * 118.64458 * 359.97318 * 29 2 1 31 31 H 1.08994 * 109.47308 * 269.99741 * 1 2 3 32 32 H 1.08999 * 109.47095 * 29.99908 * 1 2 3 33 33 H 1.09007 * 109.46839 * 149.99881 * 1 2 3 34 34 H 1.08007 * 120.70921 * 0.02562 * 3 2 1 35 35 H 0.97004 * 119.99910 * 0.02562 * 6 5 4 36 36 H 0.97003 * 119.99851 * 0.02562 * 9 7 6 37 37 H 1.09009 * 109.47192 * 55.00035 * 12 10 9 38 38 H 1.08997 * 109.47250 * 175.00599 * 12 10 9 39 39 H 0.97000 * 119.99765 * 179.97438 * 16 15 13 40 40 H 1.07997 * 119.99999 * 0.02562 * 22 21 10 41 41 H 1.07998 * 120.00527 * 180.27946 * 23 22 21 42 42 H 1.08000 * 119.99584 * 179.83382 * 24 23 22 43 43 H 1.07999 * 119.99713 * 180.02562 * 25 24 23 44 44 H 1.07998 * 120.00259 * 359.97438 * 26 21 10 45 45 H 1.08000 * 120.71369 * 180.02562 * 27 4 3 46 46 H 1.07993 * 119.37736 * 180.02562 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1656 1.1700 0.0000 4 6 3.6389 1.1494 0.0006 5 7 4.3365 2.2670 0.0060 6 7 5.7366 2.2187 0.0124 7 6 6.4503 3.3620 0.0184 8 8 7.6664 3.3200 0.0236 9 7 5.8171 4.5517 0.0188 10 6 6.5929 5.7944 0.0259 11 1 7.5021 5.6585 -0.5598 12 6 5.7568 6.9210 -0.5845 13 6 5.4960 6.6220 -2.0384 14 1 5.8878 5.7190 -2.4827 15 6 4.7572 7.5013 -2.8013 16 7 4.2797 8.6007 -2.2602 17 14 4.4346 7.1310 -4.6036 18 1 3.6974 5.8473 -4.7210 19 1 3.6230 8.2244 -5.1961 20 1 5.7275 7.0273 -5.3268 21 6 6.9573 6.1511 1.4440 22 6 6.0353 5.9773 2.4591 23 6 6.3710 6.3003 3.7606 24 6 7.6258 6.8057 4.0455 25 6 8.5460 6.9843 3.0296 26 6 8.2117 6.6572 1.7288 27 6 4.3044 -0.1652 0.0005 28 6 3.5425 -1.2706 0.0005 29 7 2.1777 -1.1912 -0.0005 30 1 1.6640 -2.0141 -0.0005 31 1 -0.3633 0.0000 1.0276 32 1 -0.3633 0.8900 -0.5138 33 1 -0.3633 -0.8900 -0.5139 34 1 1.6269 2.1061 0.0004 35 1 6.1924 1.3624 0.0126 36 1 4.8476 4.5851 0.0150 37 1 4.8078 6.9980 -0.0536 38 1 6.2985 7.8629 -0.4989 39 1 3.7603 9.2195 -2.7971 40 1 5.0539 5.5856 2.2360 41 1 5.6522 6.1603 4.5544 42 1 7.8872 7.0605 5.0620 43 1 9.5264 7.3787 3.2523 44 1 8.9307 6.7967 0.9351 45 1 5.3819 -0.2380 0.0014 46 1 4.0167 -2.2409 0.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001564398842.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:14 Heat of formation + Delta-G solvation = 36.538871 kcal Electronic energy + Delta-G solvation = -28544.401638 eV Core-core repulsion = 24626.792400 eV Total energy + Delta-G solvation = -3917.609238 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.21650 -40.80596 -39.83834 -37.34811 -36.73099 -34.69933 -33.92170 -33.67510 -32.07417 -31.65071 -30.52032 -29.84979 -28.23801 -26.66706 -23.87495 -23.77627 -23.44290 -22.94339 -22.06762 -21.01625 -19.46087 -19.05440 -18.78660 -18.48334 -17.59374 -16.93586 -16.69659 -16.45265 -16.34229 -15.90553 -15.85060 -15.43475 -15.39654 -14.89925 -14.49563 -14.38954 -14.19405 -14.15746 -13.79099 -13.65655 -13.60516 -13.43292 -13.12189 -13.03116 -12.90893 -12.69149 -12.64330 -12.46448 -12.15484 -11.88418 -11.59559 -11.44950 -11.34725 -10.88028 -10.61440 -10.58822 -10.31505 -9.88670 -9.75294 -9.52180 -8.19868 -7.98354 -6.29576 0.49253 0.51463 0.55710 0.62422 1.36256 1.39205 1.47561 1.74154 2.16004 2.19876 2.39782 2.74657 2.76502 3.01407 3.14015 3.63751 3.88950 3.99857 4.03281 4.12184 4.20557 4.31762 4.39577 4.43345 4.50898 4.64952 4.72592 4.78207 4.79182 4.81079 4.89227 5.12581 5.19420 5.20891 5.28123 5.29643 5.36599 5.40806 5.42612 5.61021 5.62347 5.64772 5.77308 5.92293 6.00531 6.14526 6.16513 6.21146 6.49791 6.66783 6.80413 7.35972 7.40185 7.79617 8.91114 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007158 B = 0.003795 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3910.838901 B = 7376.049516 C = 9890.569943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.172 3.828 3 C -0.225 4.225 4 C 0.179 3.821 5 N -0.362 5.362 6 N -0.580 5.580 7 C 0.723 3.277 8 O -0.640 6.640 9 N -0.695 5.695 10 C 0.212 3.788 11 H 0.056 0.944 12 C 0.042 3.958 13 C -0.530 4.530 14 H 0.045 0.955 15 C 0.013 3.987 16 N -0.924 5.924 17 Si 0.958 3.042 18 H -0.273 1.273 19 H -0.275 1.275 20 H -0.274 1.274 21 C -0.098 4.098 22 C -0.122 4.122 23 C -0.125 4.125 24 C -0.127 4.127 25 C -0.121 4.121 26 C -0.132 4.132 27 C -0.303 4.303 28 C 0.173 3.827 29 N -0.603 5.603 30 H 0.435 0.565 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.137 0.863 35 H 0.393 0.607 36 H 0.407 0.593 37 H 0.007 0.993 38 H 0.010 0.990 39 H 0.265 0.735 40 H 0.108 0.892 41 H 0.145 0.855 42 H 0.156 0.844 43 H 0.149 0.851 44 H 0.115 0.885 45 H 0.131 0.869 46 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.192 -23.510 10.326 27.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.063 3.937 3 C -0.253 4.253 4 C 0.002 3.998 5 N -0.178 5.178 6 N -0.326 5.326 7 C 0.423 3.577 8 O -0.521 6.521 9 N -0.347 5.347 10 C 0.106 3.894 11 H 0.075 0.925 12 C 0.004 3.996 13 C -0.568 4.568 14 H 0.063 0.937 15 C -0.186 4.186 16 N -0.564 5.564 17 Si 0.783 3.217 18 H -0.198 1.198 19 H -0.200 1.200 20 H -0.199 1.199 21 C -0.100 4.100 22 C -0.140 4.140 23 C -0.143 4.143 24 C -0.145 4.145 25 C -0.139 4.139 26 C -0.150 4.150 27 C -0.333 4.333 28 C 0.045 3.955 29 N -0.214 5.214 30 H 0.274 0.726 31 H 0.119 0.881 32 H 0.107 0.893 33 H 0.120 0.880 34 H 0.155 0.845 35 H 0.235 0.765 36 H 0.243 0.757 37 H 0.025 0.975 38 H 0.028 0.972 39 H 0.074 0.926 40 H 0.126 0.874 41 H 0.163 0.837 42 H 0.173 0.827 43 H 0.167 0.833 44 H 0.133 0.867 45 H 0.149 0.851 46 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -8.354 -22.096 10.273 25.760 hybrid contribution 0.000 -0.989 -1.315 1.646 sum -8.354 -23.085 8.958 26.133 Atomic orbital electron populations 1.21094 0.85302 1.05821 1.05248 1.20353 0.95718 0.84668 0.92983 1.21063 0.89022 0.98560 1.16637 1.22403 0.94789 0.89801 0.92780 1.75481 0.88492 1.25168 1.28699 1.45685 1.03040 1.06558 1.77278 1.15634 0.83907 0.80908 0.77273 1.90878 1.12678 1.86518 1.62075 1.44873 1.10343 1.03141 1.76328 1.19700 0.94373 0.83778 0.91533 0.92537 1.19099 0.93886 0.91899 0.94694 1.21309 1.33375 1.06187 0.95941 0.93706 1.25759 0.95315 0.94720 1.02816 1.70063 1.36498 1.11832 1.38003 0.85623 0.78310 0.77921 0.79879 1.19813 1.19966 1.19918 1.20486 0.95021 0.98708 0.95740 1.21000 0.98813 1.00664 0.93559 1.21410 0.97913 0.99182 0.95789 1.21475 0.93260 0.99412 1.00328 1.21409 1.00860 0.99779 0.91853 1.21188 0.95665 1.00021 0.98161 1.21996 1.00332 0.91713 1.19214 1.21973 0.82402 1.00539 0.90612 1.41490 1.05515 1.08545 1.65863 0.72578 0.88148 0.89335 0.87976 0.84494 0.76519 0.75726 0.97475 0.97181 0.92591 0.87400 0.83732 0.82673 0.83340 0.86672 0.85105 0.77510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.45 10.05 71.24 0.72 0.26 16 2 C 0.17 1.97 6.82 40.89 0.28 2.25 16 3 C -0.23 -4.95 9.86 23.76 0.23 -4.72 16 4 C 0.18 5.15 7.09 43.95 0.31 5.46 16 5 N -0.36 -13.61 10.47 -44.51 -0.47 -14.07 16 6 N -0.58 -23.18 6.19 -184.66 -1.14 -24.32 16 7 C 0.72 34.52 8.64 179.05 1.55 36.07 16 8 O -0.64 -33.91 16.85 -4.30 -0.07 -33.98 16 9 N -0.70 -33.59 4.00 -461.31 -1.85 -35.44 16 10 C 0.21 10.72 2.11 44.25 0.09 10.81 16 11 H 0.06 3.11 7.44 -2.39 -0.02 3.09 16 12 C 0.04 2.36 4.49 29.85 0.13 2.50 16 13 C -0.53 -32.12 8.84 25.60 0.23 -31.89 16 14 H 0.04 2.77 7.74 -2.91 -0.02 2.75 16 15 C 0.01 0.75 5.46 84.66 0.46 1.21 16 16 N -0.92 -57.18 13.29 21.45 0.28 -56.89 16 17 Si 0.96 46.89 29.54 68.60 2.03 48.91 16 18 H -0.27 -13.08 7.11 99.48 0.71 -12.38 16 19 H -0.27 -12.78 7.11 99.48 0.71 -12.08 16 20 H -0.27 -13.18 7.11 99.48 0.71 -12.48 16 21 C -0.10 -4.39 4.91 -19.87 -0.10 -4.49 16 22 C -0.12 -4.92 9.32 22.27 0.21 -4.71 16 23 C -0.13 -4.05 10.05 22.27 0.22 -3.83 16 24 C -0.13 -3.69 10.05 22.27 0.22 -3.47 16 25 C -0.12 -3.89 10.05 22.27 0.22 -3.66 16 26 C -0.13 -5.31 9.67 22.27 0.22 -5.09 16 27 C -0.30 -6.14 9.63 23.76 0.23 -5.91 16 28 C 0.17 1.56 11.15 83.02 0.93 2.49 16 29 N -0.60 -3.58 5.28 -183.07 -0.97 -4.55 16 30 H 0.44 -1.24 8.74 -92.70 -0.81 -2.05 16 31 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 32 H 0.09 0.50 8.06 -2.39 -0.02 0.49 16 33 H 0.10 -0.15 8.13 -2.38 -0.02 -0.17 16 34 H 0.14 3.20 8.06 -2.91 -0.02 3.17 16 35 H 0.39 13.75 6.66 -213.32 -1.42 12.33 16 36 H 0.41 19.73 7.64 -92.71 -0.71 19.02 16 37 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 38 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 40 H 0.11 4.42 7.73 -2.91 -0.02 4.39 16 41 H 0.14 3.70 8.06 -2.91 -0.02 3.67 16 42 H 0.16 3.21 8.06 -2.91 -0.02 3.18 16 43 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16 44 H 0.12 4.57 8.04 -2.91 -0.02 4.55 16 45 H 0.13 2.68 6.38 -2.91 -0.02 2.66 16 46 H 0.21 -0.15 8.06 -2.91 -0.02 -0.18 16 Total: -1.00 -89.72 394.69 2.06 -87.66 By element: Atomic # 1 Polarization: 41.32 SS G_CDS: -1.91 Total: 39.41 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: 6.15 Total: -6.73 kcal Atomic # 7 Polarization: -131.14 SS G_CDS: -4.14 Total: -135.27 kcal Atomic # 8 Polarization: -33.91 SS G_CDS: -0.07 Total: -33.98 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.91 kcal Total: -89.72 2.06 -87.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001564398842.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.200 kcal (2) G-P(sol) polarization free energy of solvation -89.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds