Wall clock time and date at job start Tue Mar 31 2020 23:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38805 * 120.42642 * 2 1 4 4 C 1.39490 * 118.26131 * 179.72040 * 3 2 1 5 5 C 1.48454 * 120.54718 * 179.97438 * 4 3 2 6 6 O 1.21477 * 120.00231 * 0.02562 * 5 4 3 7 7 N 1.34779 * 119.99939 * 180.02562 * 5 4 3 8 8 C 1.46502 * 120.00112 * 180.02562 * 7 5 4 9 9 C 1.50704 * 109.47092 * 179.97438 * 8 7 5 10 10 C 1.38232 * 119.99811 * 269.72510 * 9 8 7 11 11 C 1.38236 * 119.99481 * 179.74613 * 10 9 8 12 12 C 1.38231 * 120.00275 * 0.54963 * 11 10 9 13 13 C 1.50705 * 120.00112 * 179.72801 * 12 11 10 14 14 C 1.53008 * 109.46854 * 269.97392 * 13 12 11 15 15 N 1.46494 * 109.46878 * 179.97438 * 14 13 12 16 16 C 1.36939 * 119.99765 * 179.97438 * 15 14 13 17 17 H 1.08002 * 120.00086 * 0.02562 * 16 15 14 18 18 C 1.38810 * 119.99845 * 180.02562 * 16 15 14 19 19 N 1.31620 * 120.00107 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00045 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47199 * 89.99832 * 20 18 16 22 22 H 1.48493 * 109.47251 * 210.00170 * 20 18 16 23 23 H 1.48501 * 109.46884 * 330.00266 * 20 18 16 24 24 C 1.38233 * 119.99978 * 359.70018 * 12 11 10 25 25 C 1.38237 * 119.99737 * 89.99653 * 9 8 7 26 26 N 1.33102 * 118.90041 * 359.97438 * 4 3 2 27 27 C 1.31547 * 120.74276 * 359.97438 * 26 4 3 28 28 N 1.31912 * 121.91380 * 0.02562 * 27 26 4 29 29 H 1.08999 * 109.46862 * 90.00185 * 1 2 3 30 30 H 1.09001 * 109.47207 * 210.00166 * 1 2 3 31 31 H 1.08998 * 109.47502 * 330.00813 * 1 2 3 32 32 H 1.07999 * 120.86512 * 359.69607 * 3 2 1 33 33 H 0.96999 * 120.00145 * 359.97438 * 7 5 4 34 34 H 1.09000 * 109.46435 * 299.99386 * 8 7 5 35 35 H 1.09000 * 109.47286 * 59.99561 * 8 7 5 36 36 H 1.07994 * 120.00284 * 359.97438 * 10 9 8 37 37 H 1.08004 * 119.99706 * 180.27150 * 11 10 9 38 38 H 1.08989 * 109.47149 * 29.97139 * 13 12 11 39 39 H 1.08996 * 109.46958 * 149.97740 * 13 12 11 40 40 H 1.08994 * 109.46923 * 300.00301 * 14 13 12 41 41 H 1.09001 * 109.46939 * 59.99927 * 14 13 12 42 42 H 0.96996 * 120.00409 * 0.02562 * 15 14 13 43 43 H 0.97005 * 119.99622 * 179.97438 * 19 18 16 44 44 H 1.08006 * 120.00082 * 179.97438 * 24 12 11 45 45 H 1.07994 * 120.00201 * 0.02562 * 25 9 8 46 46 H 1.07992 * 119.04647 * 180.02562 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1969 0.0000 4 6 3.6039 1.1442 0.0060 5 6 4.4062 2.3933 0.0057 6 8 3.8493 3.4729 0.0007 7 7 5.7524 2.3295 0.0110 8 6 6.5442 3.5621 0.0113 9 6 8.0111 3.2169 0.0183 10 6 8.6801 3.0671 1.2187 11 6 10.0245 2.7453 1.2251 12 6 10.7024 2.5844 0.0312 13 6 12.1695 2.2396 0.0382 14 6 12.9960 3.5272 0.0382 15 7 14.4221 3.1921 0.0456 16 6 15.3599 4.1899 0.0464 17 1 15.0482 5.2239 0.0419 18 6 16.7112 3.8723 0.0529 19 7 17.0910 2.6121 0.0579 20 14 17.9906 5.2334 0.0547 21 1 18.3237 5.5979 1.4553 22 1 19.2160 4.7619 -0.6389 23 1 17.4490 6.4227 -0.6507 24 6 10.0346 2.7393 -1.1691 25 6 8.6889 3.0555 -1.1756 26 7 4.2027 -0.0445 0.0120 27 6 3.4954 -1.1537 0.0128 28 7 2.1764 -1.1397 0.0072 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5137 32 1 1.6912 2.1441 -0.0049 33 1 6.1971 1.4675 0.0154 34 1 6.3116 4.1434 -0.8810 35 1 6.3048 4.1476 0.8990 36 1 8.1517 3.1979 2.1514 37 1 10.5462 2.6240 2.1629 38 1 12.4019 1.6588 0.9307 39 1 12.4093 1.6539 -0.8492 40 1 12.7635 4.1081 -0.8543 41 1 12.7561 4.1130 0.9256 42 1 14.7020 2.2634 0.0493 43 1 18.0354 2.3903 0.0621 44 1 10.5644 2.6140 -2.1020 45 1 8.1673 3.1773 -2.1134 46 1 4.0096 -2.1034 0.0181 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567182041.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:37 Heat of formation + Delta-G solvation = 39.557192 kcal Electronic energy + Delta-G solvation = -26610.823656 eV Core-core repulsion = 22693.345303 eV Total energy + Delta-G solvation = -3917.478354 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.78128 -40.05732 -39.26174 -35.93780 -35.19600 -34.72014 -33.21752 -32.75659 -30.95370 -30.91245 -29.27311 -28.64977 -26.34110 -24.87776 -24.16745 -23.34330 -22.74866 -21.60955 -21.11225 -20.49608 -18.88423 -17.96089 -17.17126 -16.28817 -16.25740 -16.22366 -16.01158 -15.68100 -15.45323 -15.00720 -14.95669 -14.64200 -14.17323 -13.76202 -13.71616 -13.57181 -13.54997 -13.36544 -13.28275 -12.99155 -12.77514 -12.56114 -12.35974 -11.52253 -11.24059 -11.22722 -11.12928 -11.11077 -10.89116 -10.87501 -10.70009 -10.60339 -10.19193 -10.07535 -9.89972 -9.72151 -9.51634 -8.94368 -8.86145 -8.58771 -6.93025 -5.76828 -3.05793 -0.05073 0.32444 1.15961 1.40219 2.26056 2.59507 3.26147 3.37076 3.42299 3.43871 3.48899 3.50725 3.74006 3.98110 4.29583 4.37276 4.44395 4.59423 4.72631 4.74586 4.91381 4.94511 4.96498 5.02950 5.09249 5.11093 5.29450 5.36348 5.48514 5.52327 5.59742 5.72607 5.76153 5.84507 5.90349 5.91009 6.07474 6.19135 6.26037 6.27622 6.44355 6.47261 6.60791 6.81067 6.92819 6.97888 7.02000 7.40543 7.64577 7.70142 8.42072 9.53204 10.10495 10.45421 11.46092 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.033482 B = 0.001462 C = 0.001423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.068147 B =19152.931910 C =19668.607572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.178 3.822 3 C -0.170 4.170 4 C 0.135 3.865 5 C 0.568 3.432 6 O -0.526 6.526 7 N -0.699 5.699 8 C 0.163 3.837 9 C -0.130 4.130 10 C -0.096 4.096 11 C -0.118 4.118 12 C -0.050 4.050 13 C -0.095 4.095 14 C 0.161 3.839 15 N -0.734 5.734 16 C -0.240 4.240 17 H 0.070 0.930 18 C -0.014 4.014 19 N -0.934 5.934 20 Si 0.908 3.092 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.282 1.282 24 C -0.118 4.118 25 C -0.097 4.097 26 N -0.501 5.501 27 C 0.301 3.699 28 N -0.509 5.509 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.161 0.839 33 H 0.415 0.585 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.121 0.879 37 H 0.125 0.875 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.020 0.980 41 H 0.020 0.980 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.125 0.875 45 H 0.120 0.880 46 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.623 -6.617 -0.160 35.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.030 3.970 3 C -0.193 4.193 4 C -0.012 4.012 5 C 0.351 3.649 6 O -0.401 6.401 7 N -0.350 5.350 8 C 0.041 3.959 9 C -0.130 4.130 10 C -0.115 4.115 11 C -0.136 4.136 12 C -0.051 4.051 13 C -0.133 4.133 14 C 0.033 3.967 15 N -0.378 5.378 16 C -0.371 4.371 17 H 0.088 0.912 18 C -0.210 4.210 19 N -0.583 5.583 20 Si 0.739 3.261 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.207 1.207 24 C -0.136 4.136 25 C -0.115 4.115 26 N -0.218 5.218 27 C 0.013 3.987 28 N -0.224 5.224 29 H 0.108 0.892 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.178 0.822 33 H 0.251 0.749 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.139 0.861 37 H 0.143 0.857 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.038 0.962 41 H 0.038 0.962 42 H 0.217 0.783 43 H 0.065 0.935 44 H 0.143 0.857 45 H 0.138 0.862 46 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -34.422 -6.470 -0.166 35.025 hybrid contribution 0.829 0.704 -0.002 1.088 sum -33.593 -5.766 -0.169 34.085 Atomic orbital electron populations 1.20847 0.87050 1.04561 1.04153 1.21890 0.98060 0.87690 0.89377 1.22832 0.94600 1.01490 1.00405 1.21622 0.92085 0.92583 0.94947 1.17806 0.82482 0.87053 0.77532 1.90814 1.71350 1.28210 1.49717 1.46000 1.05231 1.11155 1.72631 1.20277 0.86446 0.85806 1.03359 1.19643 0.94404 1.05042 0.93917 1.21006 0.94585 0.98800 0.97109 1.21122 0.94097 1.00222 0.98174 1.20095 0.96099 0.95933 0.92940 1.20880 0.89531 0.99623 1.03220 1.20585 0.84994 0.93026 0.98052 1.42369 0.99156 1.06729 1.89596 1.19241 0.86773 0.88443 1.42666 0.91168 1.24744 0.97011 0.96233 1.02997 1.69664 1.15207 1.15575 1.57822 0.86179 0.81381 0.81035 0.77547 1.21690 1.21728 1.20740 1.21123 0.94135 1.00253 0.98104 1.21007 0.94516 0.98804 0.97179 1.68347 1.41944 0.98561 1.12977 1.25026 0.86499 0.96762 0.90387 1.68248 1.10550 1.30504 1.13109 0.89214 0.89497 0.89652 0.82172 0.74862 0.90224 0.90231 0.86149 0.85658 0.90750 0.90752 0.96242 0.96247 0.78274 0.93510 0.85657 0.86151 0.77868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.36 10.22 36.01 0.37 0.01 16 2 C 0.18 1.18 6.83 -82.23 -0.56 0.62 16 3 C -0.17 -1.27 9.41 -38.91 -0.37 -1.64 16 4 C 0.13 1.22 6.79 -82.64 -0.56 0.65 16 5 C 0.57 5.80 7.83 -12.05 -0.09 5.71 16 6 O -0.53 -6.61 16.43 5.39 0.09 -6.52 16 7 N -0.70 -6.31 5.54 -62.23 -0.34 -6.65 16 8 C 0.16 1.49 5.80 -5.19 -0.03 1.46 16 9 C -0.13 -1.31 5.25 -104.62 -0.55 -1.86 16 10 C -0.10 -1.03 9.70 -39.58 -0.38 -1.41 16 11 C -0.12 -1.46 9.70 -39.58 -0.38 -1.84 16 12 C -0.05 -0.68 5.13 -104.62 -0.54 -1.22 16 13 C -0.09 -1.52 5.46 -27.88 -0.15 -1.67 16 14 C 0.16 3.27 6.24 -4.04 -0.03 3.25 16 15 N -0.73 -18.84 5.60 -59.91 -0.34 -19.18 16 16 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 17 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 18 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 19 N -0.93 -28.38 13.06 55.49 0.72 -27.66 16 20 Si 0.91 22.54 29.55 -169.99 -5.02 17.51 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 C -0.12 -1.46 9.70 -39.58 -0.38 -1.84 16 25 C -0.10 -1.03 9.70 -39.58 -0.38 -1.41 16 26 N -0.50 -4.25 9.70 -11.15 -0.11 -4.36 16 27 C 0.30 2.15 12.28 -92.26 -1.13 1.02 16 28 N -0.51 -3.91 10.36 -10.81 -0.11 -4.02 16 29 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.08 0.15 8.10 -51.93 -0.42 -0.27 16 32 H 0.16 1.00 7.74 -52.49 -0.41 0.60 16 33 H 0.41 3.50 7.85 -40.82 -0.32 3.18 16 34 H 0.08 0.72 8.09 -51.93 -0.42 0.30 16 35 H 0.08 0.72 8.08 -51.93 -0.42 0.30 16 36 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 37 H 0.13 1.47 8.06 -52.48 -0.42 1.04 16 38 H 0.07 1.18 8.08 -51.93 -0.42 0.76 16 39 H 0.07 1.18 8.09 -51.93 -0.42 0.76 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.38 10.24 7.67 -40.82 -0.31 9.93 16 43 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.13 1.47 8.06 -52.48 -0.42 1.04 16 45 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 46 H 0.20 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 399.78 15.07 6.02 6.02 Total: -1.00 -33.93 399.78 -11.00 -44.93 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -6.49 Total: 7.59 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -5.42 Total: -7.66 kcal Atomic # 7 Polarization: -61.69 SS G_CDS: -0.18 Total: -61.87 kcal Atomic # 8 Polarization: -6.61 SS G_CDS: 0.09 Total: -6.52 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.93 -11.00 -44.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567182041.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.483 kcal (2) G-P(sol) polarization free energy of solvation -33.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds