Wall clock time and date at job start Tue Mar 31 2020 23:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38805 * 120.42642 * 2 1 4 4 C 1.39490 * 118.26131 * 179.72040 * 3 2 1 5 5 C 1.48454 * 120.54718 * 179.97438 * 4 3 2 6 6 O 1.21477 * 120.00231 * 0.02562 * 5 4 3 7 7 N 1.34779 * 119.99939 * 180.02562 * 5 4 3 8 8 C 1.46502 * 120.00112 * 180.02562 * 7 5 4 9 9 C 1.50704 * 109.47092 * 179.97438 * 8 7 5 10 10 C 1.38232 * 119.99811 * 269.72510 * 9 8 7 11 11 C 1.38236 * 119.99481 * 179.74613 * 10 9 8 12 12 C 1.38231 * 120.00275 * 0.54963 * 11 10 9 13 13 C 1.50705 * 120.00112 * 179.72801 * 12 11 10 14 14 C 1.53008 * 109.46854 * 269.97392 * 13 12 11 15 15 N 1.46494 * 109.46878 * 179.97438 * 14 13 12 16 16 C 1.36939 * 119.99765 * 179.97438 * 15 14 13 17 17 H 1.08002 * 120.00086 * 0.02562 * 16 15 14 18 18 C 1.38810 * 119.99845 * 180.02562 * 16 15 14 19 19 N 1.31620 * 120.00107 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00045 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47199 * 89.99832 * 20 18 16 22 22 H 1.48493 * 109.47251 * 210.00170 * 20 18 16 23 23 H 1.48501 * 109.46884 * 330.00266 * 20 18 16 24 24 C 1.38233 * 119.99978 * 359.70018 * 12 11 10 25 25 C 1.38237 * 119.99737 * 89.99653 * 9 8 7 26 26 N 1.33102 * 118.90041 * 359.97438 * 4 3 2 27 27 C 1.31547 * 120.74276 * 359.97438 * 26 4 3 28 28 N 1.31912 * 121.91380 * 0.02562 * 27 26 4 29 29 H 1.08999 * 109.46862 * 90.00185 * 1 2 3 30 30 H 1.09001 * 109.47207 * 210.00166 * 1 2 3 31 31 H 1.08998 * 109.47502 * 330.00813 * 1 2 3 32 32 H 1.07999 * 120.86512 * 359.69607 * 3 2 1 33 33 H 0.96999 * 120.00145 * 359.97438 * 7 5 4 34 34 H 1.09000 * 109.46435 * 299.99386 * 8 7 5 35 35 H 1.09000 * 109.47286 * 59.99561 * 8 7 5 36 36 H 1.07994 * 120.00284 * 359.97438 * 10 9 8 37 37 H 1.08004 * 119.99706 * 180.27150 * 11 10 9 38 38 H 1.08989 * 109.47149 * 29.97139 * 13 12 11 39 39 H 1.08996 * 109.46958 * 149.97740 * 13 12 11 40 40 H 1.08994 * 109.46923 * 300.00301 * 14 13 12 41 41 H 1.09001 * 109.46939 * 59.99927 * 14 13 12 42 42 H 0.96996 * 120.00409 * 0.02562 * 15 14 13 43 43 H 0.97005 * 119.99622 * 179.97438 * 19 18 16 44 44 H 1.08006 * 120.00082 * 179.97438 * 24 12 11 45 45 H 1.07994 * 120.00201 * 0.02562 * 25 9 8 46 46 H 1.07992 * 119.04647 * 180.02562 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1969 0.0000 4 6 3.6039 1.1442 0.0060 5 6 4.4062 2.3933 0.0057 6 8 3.8493 3.4729 0.0007 7 7 5.7524 2.3295 0.0110 8 6 6.5442 3.5621 0.0113 9 6 8.0111 3.2169 0.0183 10 6 8.6801 3.0671 1.2187 11 6 10.0245 2.7453 1.2251 12 6 10.7024 2.5844 0.0312 13 6 12.1695 2.2396 0.0382 14 6 12.9960 3.5272 0.0382 15 7 14.4221 3.1921 0.0456 16 6 15.3599 4.1899 0.0464 17 1 15.0482 5.2239 0.0419 18 6 16.7112 3.8723 0.0529 19 7 17.0910 2.6121 0.0579 20 14 17.9906 5.2334 0.0547 21 1 18.3237 5.5979 1.4553 22 1 19.2160 4.7619 -0.6389 23 1 17.4490 6.4227 -0.6507 24 6 10.0346 2.7393 -1.1691 25 6 8.6889 3.0555 -1.1756 26 7 4.2027 -0.0445 0.0120 27 6 3.4954 -1.1537 0.0128 28 7 2.1764 -1.1397 0.0072 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5137 32 1 1.6912 2.1441 -0.0049 33 1 6.1971 1.4675 0.0154 34 1 6.3116 4.1434 -0.8810 35 1 6.3048 4.1476 0.8990 36 1 8.1517 3.1979 2.1514 37 1 10.5462 2.6240 2.1629 38 1 12.4019 1.6588 0.9307 39 1 12.4093 1.6539 -0.8492 40 1 12.7635 4.1081 -0.8543 41 1 12.7561 4.1130 0.9256 42 1 14.7020 2.2634 0.0493 43 1 18.0354 2.3903 0.0621 44 1 10.5644 2.6140 -2.1020 45 1 8.1673 3.1773 -2.1134 46 1 4.0096 -2.1034 0.0181 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567182041.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:37 Heat of formation + Delta-G solvation = 18.885211 kcal Electronic energy + Delta-G solvation = -26611.720061 eV Core-core repulsion = 22693.345303 eV Total energy + Delta-G solvation = -3918.374758 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.35222 -40.86944 -40.14414 -37.24970 -36.20094 -35.58516 -34.29133 -33.71689 -32.52559 -31.85606 -30.05384 -29.60828 -27.44038 -25.91840 -25.03182 -24.52519 -23.65506 -23.11532 -21.80977 -21.58263 -19.54085 -19.22651 -18.54799 -17.11082 -17.00632 -16.99148 -16.72841 -16.53408 -16.48474 -16.22706 -15.81720 -15.70498 -15.41155 -15.11717 -15.00405 -14.87745 -14.30677 -14.18045 -13.94264 -13.75565 -13.62136 -13.52221 -13.22204 -12.96312 -12.87325 -12.53522 -12.37656 -12.15730 -12.05862 -12.02845 -11.81666 -11.72079 -11.68468 -11.66831 -10.95748 -10.71992 -10.48642 -10.27400 -9.83051 -9.58181 -9.03436 -7.97193 -5.26994 -0.66548 -0.18433 0.23157 0.49711 1.46995 1.48886 1.55303 1.57542 1.87014 2.54632 2.68533 2.73239 2.90966 3.00447 3.36453 3.40156 3.58726 3.72914 3.80886 3.86237 3.90896 4.12904 4.16429 4.31471 4.37345 4.44829 4.47830 4.48076 4.55090 4.64579 4.72014 4.74059 4.76773 4.79418 5.00760 5.05206 5.10226 5.15586 5.24536 5.26447 5.31899 5.44456 5.48794 5.59512 5.70908 5.77431 6.05575 6.25161 6.28363 6.82777 6.93524 7.31381 8.05729 8.30210 9.26234 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.033482 B = 0.001462 C = 0.001423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.068147 B =19152.931910 C =19668.607572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.177 3.823 3 C -0.174 4.174 4 C 0.117 3.883 5 C 0.569 3.431 6 O -0.554 6.554 7 N -0.692 5.692 8 C 0.167 3.833 9 C -0.118 4.118 10 C -0.095 4.095 11 C -0.126 4.126 12 C -0.069 4.069 13 C -0.080 4.080 14 C 0.162 3.838 15 N -0.747 5.747 16 C -0.251 4.251 17 H 0.074 0.926 18 C -0.073 4.073 19 N -0.969 5.969 20 Si 0.975 3.025 21 H -0.285 1.285 22 H -0.293 1.293 23 H -0.270 1.270 24 C -0.126 4.126 25 C -0.095 4.095 26 N -0.513 5.513 27 C 0.296 3.704 28 N -0.522 5.522 29 H 0.102 0.898 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.169 0.831 33 H 0.418 0.582 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.140 0.860 37 H 0.128 0.872 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.018 0.982 41 H 0.018 0.982 42 H 0.375 0.625 43 H 0.252 0.748 44 H 0.128 0.872 45 H 0.140 0.860 46 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.597 -6.246 -0.188 37.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.029 3.971 3 C -0.197 4.197 4 C -0.029 4.029 5 C 0.353 3.647 6 O -0.431 6.431 7 N -0.343 5.343 8 C 0.045 3.955 9 C -0.119 4.119 10 C -0.113 4.113 11 C -0.144 4.144 12 C -0.070 4.070 13 C -0.117 4.117 14 C 0.036 3.964 15 N -0.390 5.390 16 C -0.383 4.383 17 H 0.092 0.908 18 C -0.266 4.266 19 N -0.619 5.619 20 Si 0.804 3.196 21 H -0.212 1.212 22 H -0.219 1.219 23 H -0.195 1.195 24 C -0.144 4.144 25 C -0.113 4.113 26 N -0.230 5.230 27 C 0.009 3.991 28 N -0.238 5.238 29 H 0.121 0.879 30 H 0.108 0.892 31 H 0.120 0.880 32 H 0.187 0.813 33 H 0.256 0.744 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.158 0.842 37 H 0.146 0.854 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.036 0.964 41 H 0.036 0.964 42 H 0.207 0.793 43 H 0.061 0.939 44 H 0.146 0.854 45 H 0.158 0.842 46 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -36.420 -6.093 -0.193 36.926 hybrid contribution 1.298 0.566 0.006 1.416 sum -35.122 -5.527 -0.187 35.554 Atomic orbital electron populations 1.20973 0.84690 1.05567 1.05210 1.22420 0.99559 0.87078 0.87998 1.22999 0.94135 1.02309 1.00215 1.21561 0.92656 0.92391 0.96291 1.17981 0.82665 0.87161 0.76905 1.90793 1.71852 1.29273 1.51229 1.45938 1.05002 1.11289 1.72035 1.20251 0.85614 0.85873 1.03789 1.19753 0.94825 1.03672 0.93612 1.21209 0.93930 0.97929 0.98228 1.21219 0.94925 1.00426 0.97821 1.19915 0.94714 0.98249 0.94145 1.20642 0.90769 0.97281 1.03028 1.20695 0.82960 0.95278 0.97510 1.42586 1.01055 1.05861 1.89524 1.19640 0.87712 0.89223 1.41704 0.90814 1.25589 0.99056 0.98536 1.03381 1.69818 1.15294 1.17534 1.59254 0.85120 0.78442 0.78524 0.77554 1.21233 1.21907 1.19477 1.21220 0.94972 1.00458 0.97743 1.21210 0.93853 0.97929 0.98304 1.68344 1.42300 0.98694 1.13701 1.25599 0.86659 0.97338 0.89531 1.68343 1.10849 1.30979 1.13580 0.87939 0.89166 0.87966 0.81321 0.74436 0.89854 0.89859 0.84193 0.85440 0.90959 0.90959 0.96448 0.96442 0.79310 0.93877 0.85440 0.84196 0.75313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.48 10.22 71.24 0.73 0.24 16 2 C 0.18 2.09 6.83 42.64 0.29 2.38 16 3 C -0.17 -2.41 9.41 22.71 0.21 -2.19 16 4 C 0.12 2.02 6.79 41.98 0.29 2.31 16 5 C 0.57 11.12 7.83 86.97 0.68 11.80 16 6 O -0.55 -13.54 16.43 -3.64 -0.06 -13.60 16 7 N -0.69 -11.53 5.54 -469.11 -2.60 -14.13 16 8 C 0.17 2.73 5.80 85.63 0.50 3.23 16 9 C -0.12 -2.16 5.25 -19.86 -0.10 -2.26 16 10 C -0.09 -1.84 9.70 22.27 0.22 -1.63 16 11 C -0.13 -2.99 9.70 22.27 0.22 -2.77 16 12 C -0.07 -1.86 5.13 -19.87 -0.10 -1.96 16 13 C -0.08 -2.57 5.46 29.85 0.16 -2.41 16 14 C 0.16 6.65 6.24 86.38 0.54 7.19 16 15 N -0.75 -38.95 5.60 -343.46 -1.92 -40.88 16 16 C -0.25 -14.36 9.99 84.03 0.84 -13.52 16 17 H 0.07 4.07 7.83 -2.91 -0.02 4.04 16 18 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 19 N -0.97 -59.68 13.06 21.65 0.28 -59.40 16 20 Si 0.98 46.42 29.55 68.60 2.03 48.45 16 21 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 22 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 23 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 24 C -0.13 -2.99 9.70 22.27 0.22 -2.77 16 25 C -0.09 -1.84 9.70 22.27 0.22 -1.63 16 26 N -0.51 -8.19 9.70 -189.18 -1.84 -10.02 16 27 C 0.30 3.85 12.28 180.92 2.22 6.07 16 28 N -0.52 -7.30 10.36 -188.11 -1.95 -9.25 16 29 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 30 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.10 0.12 8.10 -2.39 -0.02 0.11 16 32 H 0.17 1.94 7.74 -2.91 -0.02 1.92 16 33 H 0.42 6.47 7.85 -92.71 -0.73 5.75 16 34 H 0.08 1.35 8.09 -2.39 -0.02 1.33 16 35 H 0.08 1.35 8.08 -2.39 -0.02 1.33 16 36 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 37 H 0.13 2.90 8.06 -2.91 -0.02 2.88 16 38 H 0.07 2.33 8.08 -2.39 -0.02 2.31 16 39 H 0.07 2.33 8.09 -2.39 -0.02 2.31 16 40 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.37 20.51 7.67 -92.71 -0.71 19.80 16 43 H 0.25 15.01 8.31 -92.70 -0.77 14.24 16 44 H 0.13 2.90 8.06 -2.91 -0.02 2.88 16 45 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 46 H 0.23 1.41 8.06 -2.91 -0.02 1.39 16 Total: -1.00 -72.38 399.78 1.10 -71.28 By element: Atomic # 1 Polarization: 29.69 SS G_CDS: -0.43 Total: 29.27 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: 7.58 Total: -1.72 kcal Atomic # 7 Polarization: -125.65 SS G_CDS: -8.03 Total: -133.68 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: -0.06 Total: -13.60 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -72.38 1.10 -71.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567182041.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.163 kcal (2) G-P(sol) polarization free energy of solvation -72.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds