Wall clock time and date at job start Tue Mar 31 2020 23:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38040 * 126.29433 * 2 1 4 4 C 1.47436 * 126.41203 * 359.94471 * 3 2 1 5 5 O 1.21604 * 119.99640 * 359.97438 * 4 3 2 6 6 N 1.34773 * 119.99866 * 180.02562 * 4 3 2 7 7 C 1.46506 * 119.99969 * 180.02562 * 6 4 3 8 8 H 1.08998 * 110.72827 * 31.31175 * 7 6 4 9 9 C 1.54348 * 110.81865 * 267.69559 * 7 6 4 10 10 C 1.51370 * 105.16530 * 215.42716 * 9 7 6 11 11 C 1.38498 * 130.38357 * 197.17088 * 10 9 7 12 12 C 1.38108 * 120.20928 * 180.02562 * 11 10 9 13 13 C 1.38249 * 119.93861 * 359.97235 * 12 11 10 14 14 C 1.38100 * 119.93132 * 0.02562 * 13 12 11 15 15 C 1.38222 * 109.76283 * 17.19385 * 10 9 7 16 16 C 1.51364 * 109.75378 * 359.97438 * 15 10 9 17 17 H 1.09000 * 110.30230 * 101.75239 * 16 15 10 18 18 N 1.46908 * 110.38400 * 223.85409 * 16 15 10 19 19 C 1.41283 * 107.17381 * 180.20843 * 3 2 1 20 20 N 1.30452 * 108.02383 * 359.61721 * 19 3 2 21 21 N 1.34263 * 126.29113 * 179.97438 * 2 1 3 22 22 C 1.46500 * 125.75529 * 0.03357 * 21 2 1 23 23 C 1.50707 * 109.46873 * 90.00066 * 22 21 2 24 24 H 1.07999 * 119.99505 * 0.02562 * 23 22 21 25 25 C 1.37875 * 119.99778 * 180.02562 * 23 22 21 26 26 N 1.31516 * 119.99548 * 180.02562 * 25 23 22 27 27 Si 1.86794 * 120.00249 * 359.97438 * 25 23 22 28 28 H 1.48504 * 109.47433 * 90.00192 * 27 25 23 29 29 H 1.48500 * 109.47345 * 210.00403 * 27 25 23 30 30 H 1.48499 * 109.47269 * 330.00031 * 27 25 23 31 31 H 1.08991 * 109.47124 * 90.02263 * 1 2 3 32 32 H 1.09004 * 109.46635 * 210.02639 * 1 2 3 33 33 H 1.08997 * 109.46865 * 330.01789 * 1 2 3 34 34 H 0.97005 * 120.00161 * 359.72177 * 6 4 3 35 35 H 1.08998 * 110.30221 * 334.34469 * 9 7 6 36 36 H 1.08993 * 110.30362 * 96.50473 * 9 7 6 37 37 H 1.07992 * 119.89598 * 0.03044 * 11 10 9 38 38 H 1.08006 * 120.03000 * 179.97438 * 12 11 10 39 39 H 1.08001 * 120.03148 * 180.02562 * 13 12 11 40 40 H 1.08008 * 119.88849 * 180.02562 * 14 13 12 41 41 H 1.00897 * 111.00147 * 295.79895 * 18 16 15 42 42 H 1.00902 * 110.99574 * 59.75299 * 18 16 15 43 43 H 1.08000 * 125.98997 * 179.73721 * 19 3 2 44 44 H 1.08995 * 109.47587 * 210.00247 * 22 21 2 45 45 H 1.09001 * 109.47133 * 330.00529 * 22 21 2 46 46 H 0.97003 * 119.99286 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3242 1.1126 0.0000 4 6 1.8859 2.5203 -0.0011 5 8 0.6996 2.7877 -0.0027 6 7 2.8000 3.5106 -0.0015 7 6 2.3645 4.9095 -0.0021 8 1 1.4182 5.0191 0.5276 9 6 2.2568 5.4499 -1.4438 10 6 2.6902 6.8977 -1.3574 11 6 2.5012 7.9453 -2.2434 12 6 2.9939 9.2015 -1.9493 13 6 3.6775 9.4152 -0.7668 14 6 3.8667 8.3717 0.1179 15 6 3.3741 7.1111 -0.1754 16 6 3.4466 5.8214 0.6137 17 1 4.4310 5.3663 0.5049 18 7 3.1558 6.0721 2.0317 19 6 3.6590 0.6498 -0.0049 20 7 3.6341 -0.6545 0.0006 21 7 2.3017 -1.0822 0.0005 22 6 1.8502 -2.4759 0.0004 23 6 1.6960 -2.9538 -1.4205 24 1 1.9132 -2.2863 -2.2413 25 6 1.2778 -4.2432 -1.6725 26 7 1.1438 -4.6605 -2.9125 27 14 0.9029 -5.3979 -0.2529 28 1 -0.5282 -5.2719 0.1231 29 1 1.1853 -6.7965 -0.6644 30 1 1.7536 -5.0433 0.9115 31 1 -0.3633 -0.0004 -1.0276 32 1 -0.3633 -0.8898 0.5143 33 1 -0.3633 0.8901 0.5135 34 1 3.7463 3.2973 0.0030 35 1 2.9213 4.8952 -2.1063 36 1 1.2278 5.3835 -1.7968 37 1 1.9669 7.7793 -3.1671 38 1 2.8453 10.0163 -2.6426 39 1 4.0630 10.3970 -0.5351 40 1 4.4005 8.5395 1.0417 41 1 3.8577 6.6676 2.4450 42 1 2.2339 6.4655 2.1477 43 1 4.5449 1.2676 -0.0102 44 1 2.5845 -3.0958 0.5147 45 1 0.8912 -2.5471 0.5137 46 1 0.8499 -5.5677 -3.0898 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001579526763.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:19 Heat of formation + Delta-G solvation = 61.615474 kcal Electronic energy + Delta-G solvation = -28352.364794 eV Core-core repulsion = 24435.842959 eV Total energy + Delta-G solvation = -3916.521835 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.98354 -40.62616 -38.72214 -36.60041 -34.01515 -33.69538 -32.85452 -32.10293 -31.25870 -30.68679 -28.77998 -27.55034 -26.67327 -25.91313 -23.44810 -22.71363 -21.87226 -21.27324 -20.93995 -19.85532 -18.97780 -17.23455 -17.17643 -17.06727 -16.44599 -15.80099 -15.50305 -15.30471 -14.98606 -14.88730 -14.40099 -14.23747 -14.07065 -13.84909 -13.70989 -13.37248 -13.10571 -12.99596 -12.77549 -12.64326 -12.53994 -12.25718 -12.06819 -11.99708 -11.80909 -11.58963 -11.27836 -11.22660 -11.20733 -10.83515 -10.39781 -10.22234 -9.79045 -9.46084 -9.32412 -9.14117 -8.96787 -8.84460 -8.81119 -8.63524 -7.95110 -6.32472 -4.36996 0.97126 1.03390 2.14185 2.74664 3.03388 3.12012 3.18885 3.21703 3.38876 3.45450 3.82206 4.05702 4.10830 4.16233 4.48673 4.64604 4.65897 4.73578 4.88842 4.92954 4.97676 5.08956 5.16129 5.20175 5.30816 5.35710 5.50318 5.50981 5.65761 5.72100 5.79299 5.83668 5.93809 6.05808 6.06191 6.15126 6.25030 6.27399 6.45369 6.49257 6.61082 6.62498 6.63445 6.73977 7.03625 7.05621 7.19084 7.57508 7.72654 8.20559 8.29451 8.59538 8.70801 9.21514 10.79736 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026917 B = 0.002102 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.968256 B =13317.494115 C =13628.291752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.169 3.831 3 C -0.328 4.328 4 C 0.608 3.392 5 O -0.554 6.554 6 N -0.720 5.720 7 C 0.164 3.836 8 H 0.106 0.894 9 C -0.100 4.100 10 C -0.079 4.079 11 C -0.108 4.108 12 C -0.115 4.115 13 C -0.124 4.124 14 C -0.101 4.101 15 C -0.139 4.139 16 C 0.126 3.874 17 H 0.100 0.900 18 N -0.832 5.832 19 C 0.062 3.938 20 N -0.293 5.293 21 N -0.314 5.314 22 C 0.224 3.776 23 C -0.544 4.544 24 H 0.082 0.918 25 C 0.081 3.919 26 N -0.883 5.883 27 Si 0.873 3.127 28 H -0.270 1.270 29 H -0.279 1.279 30 H -0.263 1.263 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.399 0.601 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.117 0.883 41 H 0.342 0.658 42 H 0.345 0.655 43 H 0.177 0.823 44 H 0.055 0.945 45 H 0.048 0.952 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.295 26.278 6.674 27.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.032 3.968 3 C -0.344 4.344 4 C 0.399 3.601 5 O -0.433 6.433 6 N -0.371 5.371 7 C 0.057 3.943 8 H 0.124 0.876 9 C -0.139 4.139 10 C -0.080 4.080 11 C -0.126 4.126 12 C -0.133 4.133 13 C -0.142 4.142 14 C -0.120 4.120 15 C -0.142 4.142 16 C 0.014 3.986 17 H 0.118 0.882 18 N -0.360 5.360 19 C -0.125 4.125 20 N -0.112 5.112 21 N -0.090 5.090 22 C 0.106 3.894 23 C -0.582 4.582 24 H 0.100 0.900 25 C -0.124 4.124 26 N -0.519 5.519 27 Si 0.698 3.302 28 H -0.195 1.195 29 H -0.204 1.204 30 H -0.188 1.188 31 H 0.105 0.895 32 H 0.088 0.912 33 H 0.114 0.886 34 H 0.234 0.766 35 H 0.108 0.892 36 H 0.103 0.897 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.135 0.865 41 H 0.155 0.845 42 H 0.158 0.842 43 H 0.194 0.806 44 H 0.073 0.927 45 H 0.066 0.934 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.161 24.200 6.687 25.449 hybrid contribution -0.047 1.005 0.059 1.008 sum 4.113 25.205 6.747 26.414 Atomic orbital electron populations 1.20594 0.86731 1.03677 1.04196 1.21468 0.94947 0.86416 0.93972 1.19637 0.93075 0.92488 1.29174 1.17257 0.84991 0.83805 0.74065 1.90692 1.16674 1.84378 1.51547 1.45561 1.09751 1.04462 1.77353 1.21384 0.98087 0.80589 0.94216 0.87627 1.21587 1.03103 0.90954 0.98270 1.20557 0.97490 0.95403 0.94590 1.20713 1.00361 0.92159 0.99362 1.21082 0.98173 0.96826 0.97198 1.21025 0.99832 0.98778 0.94599 1.20533 0.99955 0.91798 0.99681 1.21407 0.99575 0.95739 0.97444 1.21213 0.99774 0.90832 0.86783 0.88204 1.58879 1.07872 1.55863 1.13344 1.23739 0.96421 0.92519 0.99870 1.77147 0.98065 1.12413 1.23624 1.48889 1.02767 1.07508 1.49857 1.20151 0.95720 0.73366 1.00202 1.21087 1.47959 0.99191 0.90003 0.90040 1.24795 0.94320 0.97422 0.95879 1.69868 1.45194 1.18220 1.18654 0.86901 0.79521 0.81024 0.82710 1.19506 1.20380 1.18776 0.89503 0.91158 0.88631 0.76642 0.89187 0.89675 0.86007 0.85842 0.85927 0.86511 0.84479 0.84223 0.80593 0.92728 0.93423 0.91991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.65 9.57 36.01 0.34 -1.31 16 2 C 0.17 3.36 7.01 -81.60 -0.57 2.79 16 3 C -0.33 -5.85 6.13 -105.07 -0.64 -6.49 16 4 C 0.61 9.74 7.81 -12.52 -0.10 9.64 16 5 O -0.55 -10.19 14.48 5.27 0.08 -10.11 16 6 N -0.72 -8.49 5.13 -53.51 -0.27 -8.77 16 7 C 0.16 1.71 3.12 -66.52 -0.21 1.51 16 8 H 0.11 1.30 7.37 -51.93 -0.38 0.92 16 9 C -0.10 -1.01 6.49 -26.85 -0.17 -1.18 16 10 C -0.08 -0.74 6.14 -104.20 -0.64 -1.38 16 11 C -0.11 -0.92 10.04 -39.53 -0.40 -1.32 16 12 C -0.11 -0.85 10.05 -39.62 -0.40 -1.25 16 13 C -0.12 -0.88 10.05 -39.63 -0.40 -1.28 16 14 C -0.10 -0.75 9.96 -39.54 -0.39 -1.14 16 15 C -0.14 -1.18 5.77 -104.21 -0.60 -1.78 16 16 C 0.13 1.05 3.71 -67.84 -0.25 0.79 16 17 H 0.10 0.79 7.80 -51.93 -0.41 0.38 16 18 N -0.83 -6.34 9.28 -4.77 -0.04 -6.39 16 19 C 0.06 1.05 11.50 -16.98 -0.20 0.85 16 20 N -0.29 -6.16 12.50 30.86 0.39 -5.77 16 21 N -0.31 -6.91 3.56 -57.77 -0.21 -7.11 16 22 C 0.22 5.23 5.04 -5.19 -0.03 5.20 16 23 C -0.54 -14.90 9.94 -34.44 -0.34 -15.24 16 24 H 0.08 2.52 8.06 -52.49 -0.42 2.10 16 25 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 26 N -0.88 -25.84 13.96 55.43 0.77 -25.06 16 27 Si 0.87 19.78 27.47 -169.99 -4.67 15.11 16 28 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 29 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 30 H -0.26 -5.69 6.54 56.52 0.37 -5.32 16 31 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 32 H 0.07 1.16 7.05 -51.93 -0.37 0.79 16 33 H 0.10 1.60 6.50 -51.93 -0.34 1.26 16 34 H 0.40 3.84 7.38 -40.82 -0.30 3.54 16 35 H 0.09 0.90 8.08 -51.93 -0.42 0.48 16 36 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 38 H 0.12 0.66 8.06 -52.48 -0.42 0.24 16 39 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 40 H 0.12 0.64 8.06 -52.48 -0.42 0.22 16 41 H 0.34 1.99 9.03 -39.29 -0.35 1.63 16 42 H 0.34 2.56 8.88 -39.29 -0.35 2.21 16 43 H 0.18 2.11 7.50 -52.49 -0.39 1.72 16 44 H 0.05 1.28 7.20 -51.93 -0.37 0.90 16 45 H 0.05 1.02 6.44 -51.93 -0.33 0.69 16 46 H 0.27 7.32 8.31 -40.82 -0.34 6.99 16 LS Contribution 383.03 15.07 5.77 5.77 Total: -1.00 -32.78 383.03 -9.42 -42.20 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -6.14 Total: 9.60 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: -5.09 Total: -9.47 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: 0.63 Total: -53.10 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.08 Total: -10.11 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -4.67 Total: 15.11 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.78 -9.42 -42.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579526763.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.817 kcal (2) G-P(sol) polarization free energy of solvation -32.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds