Wall clock time and date at job start Tue Mar 31 2020 23:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.45912 * 2 1 4 4 C 1.36937 * 119.99876 * 60.00465 * 3 2 1 5 5 H 1.07995 * 120.00003 * 359.97438 * 4 3 2 6 6 C 1.38808 * 119.99701 * 179.97438 * 4 3 2 7 7 N 1.31622 * 120.00085 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 119.99964 * 179.97438 * 6 4 3 9 9 H 1.48506 * 109.47355 * 180.02562 * 8 6 4 10 10 H 1.48503 * 109.47257 * 300.00230 * 8 6 4 11 11 H 1.48500 * 109.47175 * 59.99954 * 8 6 4 12 12 C 1.53040 * 109.45995 * 119.97360 * 2 1 3 13 13 C 1.53165 * 109.32386 * 181.38627 * 12 2 1 14 14 N 1.46928 * 108.77078 * 305.35255 * 13 12 2 15 15 C 1.34770 * 120.63176 * 233.59287 * 14 13 12 16 16 O 1.21550 * 120.00011 * 172.28869 * 15 14 13 17 17 C 1.47922 * 120.00067 * 352.29044 * 15 14 13 18 18 C 1.38941 * 119.84440 * 170.47685 * 17 15 14 19 19 C 1.40655 * 117.38346 * 179.74810 * 18 17 15 20 20 C 1.40258 * 122.03452 * 180.28150 * 19 18 17 21 21 C 1.36263 * 119.47529 * 180.22853 * 20 19 18 22 22 C 1.39329 * 120.87132 * 0.02562 * 21 20 19 23 23 C 1.36229 * 121.15897 * 359.97438 * 22 21 20 24 24 C 1.40334 * 119.67797 * 359.97438 * 23 22 21 25 25 N 1.33824 * 121.62047 * 180.02562 * 24 23 22 26 26 N 1.28439 * 121.68652 * 179.97438 * 25 24 23 27 27 C 1.46922 * 118.73473 * 53.61041 * 14 13 12 28 28 C 1.53042 * 109.46077 * 240.02882 * 2 1 3 29 29 H 1.09004 * 109.47170 * 59.99711 * 1 2 3 30 30 H 1.08993 * 109.47141 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47217 * 300.00032 * 1 2 3 32 32 H 0.97005 * 119.99704 * 239.99776 * 3 2 1 33 33 H 0.97000 * 120.00421 * 359.97438 * 7 6 4 34 34 H 1.09003 * 109.49326 * 301.31947 * 12 2 1 35 35 H 1.08992 * 109.49650 * 61.42135 * 12 2 1 36 36 H 1.09007 * 109.58681 * 185.57046 * 13 12 2 37 37 H 1.08999 * 109.59285 * 65.14500 * 13 12 2 38 38 H 1.07998 * 121.30726 * 359.97438 * 18 17 15 39 39 H 1.08005 * 120.26167 * 0.20731 * 20 19 18 40 40 H 1.08000 * 119.56887 * 180.02562 * 21 20 19 41 41 H 1.08001 * 119.42184 * 179.97438 * 22 21 20 42 42 H 1.08002 * 120.16074 * 180.02562 * 23 22 21 43 43 H 1.09007 * 109.58611 * 186.60455 * 27 14 13 44 44 H 1.09004 * 109.58665 * 66.18391 * 27 14 13 45 45 H 1.09002 * 109.49482 * 298.58267 * 28 2 1 46 46 H 1.08997 * 109.49697 * 58.64197 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0180 1.3814 0.0000 4 6 1.6871 2.2244 1.0271 5 1 1.0660 1.8712 1.8369 6 6 2.1500 3.5331 1.0273 7 7 2.9074 3.9634 0.0406 8 14 1.6980 4.6834 2.4280 9 1 2.3124 6.0148 2.1930 10 1 0.2213 4.8251 2.4953 11 1 2.2005 4.1249 3.7089 12 6 2.0398 -0.7209 1.2500 13 6 3.5711 -0.6889 1.2644 14 7 4.0676 -1.2493 0.0003 15 6 4.9616 -2.2578 0.0004 16 8 5.2590 -2.8065 -1.0427 17 6 5.5808 -2.6971 1.2699 18 6 6.3455 -3.8568 1.3013 19 6 6.9144 -4.2234 2.5343 20 6 7.7080 -5.3712 2.6756 21 6 8.2295 -5.6797 3.8960 22 6 7.9842 -4.8707 5.0036 23 6 7.2181 -3.7489 4.9012 24 6 6.6639 -3.3968 3.6609 25 7 5.9060 -2.3034 3.5161 26 7 5.3986 -1.9797 2.3815 27 6 3.5713 -0.6890 -1.2640 28 6 2.0399 -0.7209 -1.2500 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.5757 1.6987 -0.7275 33 1 3.1424 3.3660 -0.6866 34 1 1.6574 -0.2207 2.1398 35 1 1.6976 -1.7556 1.2382 36 1 3.9412 -1.2849 2.0987 37 1 3.9142 0.3405 1.3676 38 1 6.5000 -4.4513 0.4130 39 1 7.9038 -6.0057 1.8238 40 1 8.8411 -6.5630 4.0064 41 1 8.4090 -5.1375 5.9600 42 1 7.0387 -3.1332 5.7701 43 1 3.9416 -1.2850 -2.0982 44 1 3.9145 0.3405 -1.3671 45 1 1.6975 -1.7557 -1.2383 46 1 1.6569 -0.2211 -2.1398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649462258.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:43 Heat of formation + Delta-G solvation = 81.032615 kcal Electronic energy + Delta-G solvation = -29732.415258 eV Core-core repulsion = 25816.735414 eV Total energy + Delta-G solvation = -3915.679844 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.71448 -39.95235 -38.18591 -37.76130 -34.67874 -33.99670 -32.69130 -32.02153 -30.97274 -30.41104 -28.69824 -27.76772 -25.69822 -25.31994 -23.69833 -22.92451 -22.75866 -22.62343 -20.55556 -19.01701 -18.91619 -18.02022 -17.03364 -16.81458 -16.30276 -15.83299 -15.74501 -15.10516 -15.04857 -14.68458 -14.44757 -14.25282 -13.95876 -13.66400 -13.57301 -13.47601 -13.09534 -12.89693 -12.66396 -12.50714 -12.41599 -12.03323 -11.55802 -11.37524 -11.26671 -11.18829 -11.04621 -10.74208 -10.68622 -10.53565 -10.32849 -9.94634 -9.92198 -9.84541 -9.78359 -9.22331 -9.02485 -8.85490 -8.76212 -8.24199 -6.95981 -6.01805 -3.01788 -0.39909 0.07158 1.34016 2.11200 2.99898 3.02428 3.56408 3.59644 3.60479 3.67350 3.76590 3.93653 4.15171 4.16271 4.35623 4.59975 4.61906 4.72614 4.72759 5.11803 5.21466 5.27618 5.30924 5.38924 5.39894 5.44453 5.60060 5.70181 5.73860 5.79706 5.84119 5.85906 5.89583 6.04793 6.08249 6.21902 6.23583 6.31062 6.36225 6.53136 6.63495 6.65168 6.73450 6.95783 7.03944 7.08163 7.64084 7.89129 8.11663 8.33307 8.82701 9.29215 10.15890 10.31488 11.46161 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013774 B = 0.003209 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.367243 B = 8723.123179 C = 9953.384443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.201 3.799 3 N -0.727 5.727 4 C -0.319 4.319 5 H 0.065 0.935 6 C -0.045 4.045 7 N -0.946 5.946 8 Si 1.075 2.925 9 H -0.287 1.287 10 H -0.297 1.297 11 H -0.295 1.295 12 C -0.133 4.133 13 C 0.086 3.914 14 N -0.573 5.573 15 C 0.570 3.430 16 O -0.548 6.548 17 C 0.000 4.000 18 C -0.032 4.032 19 C -0.074 4.074 20 C -0.095 4.095 21 C -0.098 4.098 22 C -0.095 4.095 23 C -0.077 4.077 24 C 0.071 3.929 25 N -0.204 5.204 26 N -0.174 5.174 27 C 0.114 3.886 28 C -0.130 4.130 29 H 0.048 0.952 30 H 0.035 0.965 31 H 0.057 0.943 32 H 0.366 0.634 33 H 0.254 0.746 34 H 0.076 0.924 35 H 0.043 0.957 36 H 0.126 0.874 37 H 0.089 0.911 38 H 0.166 0.834 39 H 0.140 0.860 40 H 0.135 0.865 41 H 0.138 0.862 42 H 0.147 0.853 43 H 0.085 0.915 44 H 0.076 0.924 45 H 0.064 0.936 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.029 -21.742 6.770 24.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.110 3.890 3 N -0.371 5.371 4 C -0.450 4.450 5 H 0.083 0.917 6 C -0.242 4.242 7 N -0.592 5.592 8 Si 0.906 3.094 9 H -0.213 1.213 10 H -0.225 1.225 11 H -0.223 1.223 12 C -0.173 4.173 13 C -0.036 4.036 14 N -0.302 5.302 15 C 0.355 3.645 16 O -0.427 6.427 17 C -0.132 4.132 18 C -0.062 4.062 19 C -0.082 4.082 20 C -0.114 4.114 21 C -0.117 4.117 22 C -0.116 4.116 23 C -0.098 4.098 24 C -0.057 4.057 25 N -0.059 5.059 26 N -0.031 5.031 27 C -0.008 4.008 28 C -0.168 4.168 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.200 0.800 33 H 0.065 0.935 34 H 0.095 0.905 35 H 0.062 0.938 36 H 0.142 0.858 37 H 0.107 0.893 38 H 0.183 0.817 39 H 0.158 0.842 40 H 0.153 0.847 41 H 0.155 0.845 42 H 0.164 0.836 43 H 0.104 0.896 44 H 0.095 0.905 45 H 0.082 0.918 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.545 -19.221 7.601 22.366 hybrid contribution 0.422 -2.539 -1.359 2.911 sum 8.967 -21.760 6.242 24.349 Atomic orbital electron populations 1.22195 0.97583 0.98901 1.02099 1.19494 0.92115 0.85762 0.91625 1.42494 1.61199 1.06653 1.26722 1.19902 1.29315 0.94337 1.01409 0.91745 1.25627 0.99133 0.95988 1.03487 1.70887 1.39053 1.37909 1.11352 0.83306 0.75239 0.76339 0.74494 1.21255 1.22511 1.22259 1.22309 0.95293 0.98642 1.01093 1.22865 0.94314 1.01703 0.84714 1.48031 1.40137 1.32670 1.09365 1.17513 0.80083 0.80482 0.86444 1.90754 1.64016 1.56163 1.31775 1.22672 0.99894 0.95178 0.95494 1.22541 0.91154 0.94548 0.97992 1.18828 0.98781 0.97042 0.93539 1.21035 0.96324 0.95244 0.98828 1.21121 0.98575 0.99648 0.92404 1.21107 0.97018 0.93994 0.99460 1.20861 0.96027 0.97091 0.95794 1.20469 0.97128 0.93327 0.94738 1.74012 1.04682 1.11578 1.15649 1.73472 1.11457 1.23459 0.94761 1.21664 0.94488 0.99212 0.85414 1.22100 0.94614 1.00629 0.99480 0.93328 0.94633 0.92439 0.80004 0.93525 0.90520 0.93793 0.85802 0.89325 0.81680 0.84209 0.84681 0.84464 0.83573 0.89648 0.90546 0.91759 0.90788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 8.44 37.16 0.31 -2.43 16 2 C 0.20 3.89 0.74 -131.77 -0.10 3.79 16 3 N -0.73 -17.09 4.13 -47.19 -0.19 -17.28 16 4 C -0.32 -8.47 8.68 -15.06 -0.13 -8.60 16 5 H 0.06 1.70 6.70 -52.49 -0.35 1.35 16 6 C -0.04 -1.27 5.50 -17.43 -0.10 -1.37 16 7 N -0.95 -28.82 13.70 55.49 0.76 -28.06 16 8 Si 1.07 25.90 29.92 -169.99 -5.09 20.82 16 9 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 10 H -0.30 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.30 -6.83 7.11 56.52 0.40 -6.43 16 12 C -0.13 -2.47 4.70 -26.63 -0.13 -2.59 16 13 C 0.09 1.61 5.63 -3.72 -0.02 1.59 16 14 N -0.57 -10.21 2.97 -173.87 -0.52 -10.72 16 15 C 0.57 9.87 7.65 -12.30 -0.09 9.77 16 16 O -0.55 -10.15 15.82 5.32 0.08 -10.06 16 17 C 0.00 0.00 6.65 -82.89 -0.55 -0.55 16 18 C -0.03 -0.39 9.51 -38.41 -0.37 -0.75 16 19 C -0.07 -0.79 5.75 -106.80 -0.61 -1.40 16 20 C -0.10 -0.69 9.81 -39.53 -0.39 -1.08 16 21 C -0.10 -0.55 9.96 -39.89 -0.40 -0.95 16 22 C -0.10 -0.57 9.94 -39.90 -0.40 -0.96 16 23 C -0.08 -0.66 10.00 -39.52 -0.40 -1.06 16 24 C 0.07 0.85 6.69 -84.79 -0.57 0.28 16 25 N -0.20 -3.05 11.55 32.23 0.37 -2.68 16 26 N -0.17 -2.83 7.28 33.24 0.24 -2.59 16 27 C 0.11 1.99 6.17 -3.72 -0.02 1.96 16 28 C -0.13 -2.19 4.96 -26.61 -0.13 -2.32 16 29 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 1.14 7.27 -51.93 -0.38 0.76 16 32 H 0.37 9.03 5.29 -40.82 -0.22 8.82 16 33 H 0.25 7.60 6.77 -40.82 -0.28 7.33 16 34 H 0.08 1.52 7.31 -51.93 -0.38 1.14 16 35 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.13 2.23 4.00 -135.67 -0.54 1.69 16 37 H 0.09 1.96 7.74 -51.93 -0.40 1.56 16 38 H 0.17 1.68 7.72 -52.49 -0.41 1.27 16 39 H 0.14 0.66 8.06 -52.48 -0.42 0.24 16 40 H 0.14 0.36 8.06 -52.49 -0.42 -0.06 16 41 H 0.14 0.42 8.06 -52.49 -0.42 -0.01 16 42 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 43 H 0.09 1.42 7.00 -51.93 -0.36 1.06 16 44 H 0.08 1.44 6.94 -51.93 -0.36 1.08 16 45 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 367.13 15.07 5.53 5.53 Total: -1.00 -33.01 367.13 -9.16 -42.17 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -6.28 Total: 9.54 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: -4.08 Total: -6.66 kcal Atomic # 7 Polarization: -62.00 SS G_CDS: 0.66 Total: -61.34 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.08 Total: -10.06 kcal Atomic # 14 Polarization: 25.90 SS G_CDS: -5.09 Total: 20.82 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.01 -9.16 -42.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649462258.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.201 kcal (2) G-P(sol) polarization free energy of solvation -33.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds