Wall clock time and date at job start Tue Mar 31 2020 23:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.45912 * 2 1 4 4 C 1.36937 * 119.99876 * 60.00465 * 3 2 1 5 5 H 1.07995 * 120.00003 * 359.97438 * 4 3 2 6 6 C 1.38808 * 119.99701 * 179.97438 * 4 3 2 7 7 N 1.31622 * 120.00085 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 119.99964 * 179.97438 * 6 4 3 9 9 H 1.48506 * 109.47355 * 180.02562 * 8 6 4 10 10 H 1.48503 * 109.47257 * 300.00230 * 8 6 4 11 11 H 1.48500 * 109.47175 * 59.99954 * 8 6 4 12 12 C 1.53040 * 109.45995 * 119.97360 * 2 1 3 13 13 C 1.53165 * 109.32386 * 181.38627 * 12 2 1 14 14 N 1.46928 * 108.77078 * 305.35255 * 13 12 2 15 15 C 1.34770 * 120.63176 * 233.59287 * 14 13 12 16 16 O 1.21550 * 120.00011 * 172.28869 * 15 14 13 17 17 C 1.47922 * 120.00067 * 352.29044 * 15 14 13 18 18 C 1.38941 * 119.84440 * 170.47685 * 17 15 14 19 19 C 1.40655 * 117.38346 * 179.74810 * 18 17 15 20 20 C 1.40258 * 122.03452 * 180.28150 * 19 18 17 21 21 C 1.36263 * 119.47529 * 180.22853 * 20 19 18 22 22 C 1.39329 * 120.87132 * 0.02562 * 21 20 19 23 23 C 1.36229 * 121.15897 * 359.97438 * 22 21 20 24 24 C 1.40334 * 119.67797 * 359.97438 * 23 22 21 25 25 N 1.33824 * 121.62047 * 180.02562 * 24 23 22 26 26 N 1.28439 * 121.68652 * 179.97438 * 25 24 23 27 27 C 1.46922 * 118.73473 * 53.61041 * 14 13 12 28 28 C 1.53042 * 109.46077 * 240.02882 * 2 1 3 29 29 H 1.09004 * 109.47170 * 59.99711 * 1 2 3 30 30 H 1.08993 * 109.47141 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47217 * 300.00032 * 1 2 3 32 32 H 0.97005 * 119.99704 * 239.99776 * 3 2 1 33 33 H 0.97000 * 120.00421 * 359.97438 * 7 6 4 34 34 H 1.09003 * 109.49326 * 301.31947 * 12 2 1 35 35 H 1.08992 * 109.49650 * 61.42135 * 12 2 1 36 36 H 1.09007 * 109.58681 * 185.57046 * 13 12 2 37 37 H 1.08999 * 109.59285 * 65.14500 * 13 12 2 38 38 H 1.07998 * 121.30726 * 359.97438 * 18 17 15 39 39 H 1.08005 * 120.26167 * 0.20731 * 20 19 18 40 40 H 1.08000 * 119.56887 * 180.02562 * 21 20 19 41 41 H 1.08001 * 119.42184 * 179.97438 * 22 21 20 42 42 H 1.08002 * 120.16074 * 180.02562 * 23 22 21 43 43 H 1.09007 * 109.58611 * 186.60455 * 27 14 13 44 44 H 1.09004 * 109.58665 * 66.18391 * 27 14 13 45 45 H 1.09002 * 109.49482 * 298.58267 * 28 2 1 46 46 H 1.08997 * 109.49697 * 58.64197 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0180 1.3814 0.0000 4 6 1.6871 2.2244 1.0271 5 1 1.0660 1.8712 1.8369 6 6 2.1500 3.5331 1.0273 7 7 2.9074 3.9634 0.0406 8 14 1.6980 4.6834 2.4280 9 1 2.3124 6.0148 2.1930 10 1 0.2213 4.8251 2.4953 11 1 2.2005 4.1249 3.7089 12 6 2.0398 -0.7209 1.2500 13 6 3.5711 -0.6889 1.2644 14 7 4.0676 -1.2493 0.0003 15 6 4.9616 -2.2578 0.0004 16 8 5.2590 -2.8065 -1.0427 17 6 5.5808 -2.6971 1.2699 18 6 6.3455 -3.8568 1.3013 19 6 6.9144 -4.2234 2.5343 20 6 7.7080 -5.3712 2.6756 21 6 8.2295 -5.6797 3.8960 22 6 7.9842 -4.8707 5.0036 23 6 7.2181 -3.7489 4.9012 24 6 6.6639 -3.3968 3.6609 25 7 5.9060 -2.3034 3.5161 26 7 5.3986 -1.9797 2.3815 27 6 3.5713 -0.6890 -1.2640 28 6 2.0399 -0.7209 -1.2500 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.5757 1.6987 -0.7275 33 1 3.1424 3.3660 -0.6866 34 1 1.6574 -0.2207 2.1398 35 1 1.6976 -1.7556 1.2382 36 1 3.9412 -1.2849 2.0987 37 1 3.9142 0.3405 1.3676 38 1 6.5000 -4.4513 0.4130 39 1 7.9038 -6.0057 1.8238 40 1 8.8411 -6.5630 4.0064 41 1 8.4090 -5.1375 5.9600 42 1 7.0387 -3.1332 5.7701 43 1 3.9416 -1.2850 -2.0982 44 1 3.9145 0.3405 -1.3671 45 1 1.6975 -1.7557 -1.2383 46 1 1.6569 -0.2211 -2.1398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649462258.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:42 Heat of formation + Delta-G solvation = 60.238111 kcal Electronic energy + Delta-G solvation = -29733.316976 eV Core-core repulsion = 25816.735414 eV Total energy + Delta-G solvation = -3916.581562 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.65887 -41.24896 -39.45500 -38.79170 -36.30467 -34.89313 -34.45830 -33.06270 -32.02601 -31.46441 -30.57134 -29.25221 -26.57901 -26.36785 -25.63636 -24.27994 -24.13150 -23.45914 -21.83491 -20.34904 -19.82217 -19.34597 -18.87028 -17.87456 -17.42030 -17.02352 -16.87737 -16.67215 -15.95188 -15.75798 -15.70976 -15.46627 -15.39695 -15.16129 -15.02882 -14.57221 -14.44966 -14.21056 -14.02432 -13.44216 -13.29593 -13.09253 -13.03414 -12.82845 -12.71107 -12.61159 -12.37042 -12.18502 -12.14109 -11.94473 -11.88219 -11.77831 -11.50517 -11.11230 -10.95992 -10.92907 -10.58671 -10.31238 -9.79526 -9.45609 -8.97978 -8.25342 -5.18039 -1.19410 -0.80525 0.62094 1.16267 1.59394 1.69133 1.74866 1.84053 1.98170 2.61101 2.76504 2.78326 3.13586 3.18868 3.38419 3.51357 3.63180 3.68699 3.69605 3.87275 3.98180 4.07971 4.11574 4.15613 4.26740 4.38308 4.40684 4.48712 4.54982 4.58739 4.65859 4.77974 4.85658 4.90552 4.92794 4.98480 5.03233 5.08156 5.12468 5.22167 5.25258 5.31145 5.38368 5.49261 5.58919 5.69639 5.75327 6.24014 6.61679 6.78450 7.21259 7.32133 8.12137 8.24419 9.26563 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013774 B = 0.003209 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.367243 B = 8723.123179 C = 9953.384443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.192 3.808 3 N -0.734 5.734 4 C -0.298 4.298 5 H 0.066 0.934 6 C -0.109 4.109 7 N -0.984 5.984 8 Si 1.118 2.882 9 H -0.299 1.299 10 H -0.280 1.280 11 H -0.282 1.282 12 C -0.127 4.127 13 C 0.099 3.901 14 N -0.579 5.579 15 C 0.572 3.428 16 O -0.564 6.564 17 C -0.032 4.032 18 C -0.022 4.022 19 C -0.082 4.082 20 C -0.099 4.099 21 C -0.081 4.081 22 C -0.069 4.069 23 C -0.102 4.102 24 C 0.054 3.946 25 N -0.234 5.234 26 N -0.210 5.210 27 C 0.116 3.884 28 C -0.119 4.119 29 H 0.042 0.958 30 H 0.067 0.933 31 H 0.039 0.961 32 H 0.357 0.643 33 H 0.242 0.758 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.137 0.863 37 H 0.043 0.957 38 H 0.184 0.816 39 H 0.169 0.831 40 H 0.179 0.821 41 H 0.177 0.823 42 H 0.153 0.847 43 H 0.095 0.905 44 H 0.052 0.948 45 H 0.086 0.914 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.179 -25.933 8.461 29.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.102 3.898 3 N -0.377 5.377 4 C -0.429 4.429 5 H 0.084 0.916 6 C -0.300 4.300 7 N -0.633 5.633 8 Si 0.945 3.055 9 H -0.226 1.226 10 H -0.207 1.207 11 H -0.208 1.208 12 C -0.167 4.167 13 C -0.024 4.024 14 N -0.308 5.308 15 C 0.359 3.641 16 O -0.444 6.444 17 C -0.165 4.165 18 C -0.051 4.051 19 C -0.090 4.090 20 C -0.117 4.117 21 C -0.100 4.100 22 C -0.089 4.089 23 C -0.123 4.123 24 C -0.074 4.074 25 N -0.088 5.088 26 N -0.067 5.067 27 C -0.006 4.006 28 C -0.158 4.158 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.058 0.942 32 H 0.190 0.810 33 H 0.052 0.948 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.153 0.847 37 H 0.062 0.938 38 H 0.201 0.799 39 H 0.187 0.813 40 H 0.196 0.804 41 H 0.194 0.806 42 H 0.170 0.830 43 H 0.113 0.887 44 H 0.071 0.929 45 H 0.104 0.896 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 9.663 -23.463 9.301 27.026 hybrid contribution 0.276 -1.546 -1.729 2.336 sum 9.939 -25.009 7.573 27.957 Atomic orbital electron populations 1.22099 0.96358 1.00671 1.00916 1.19807 0.92872 0.83849 0.93279 1.42651 1.61106 1.08202 1.25713 1.20143 1.27017 0.94361 1.01419 0.91625 1.26833 0.99794 0.98259 1.05078 1.70985 1.41805 1.38081 1.12455 0.82730 0.75856 0.74169 0.72786 1.22560 1.20651 1.20843 1.22229 0.95045 0.99588 0.99808 1.22631 0.94372 0.99446 0.85940 1.48013 1.40781 1.33127 1.08875 1.17801 0.79305 0.79836 0.87190 1.90719 1.64377 1.56707 1.32586 1.22407 1.02408 0.97114 0.94547 1.22768 0.89739 0.93289 0.99337 1.19106 0.99318 0.98197 0.92393 1.21433 0.95320 0.94053 1.00896 1.21702 0.97013 1.00173 0.91148 1.21654 0.94046 0.91829 1.01378 1.21105 0.97470 0.98904 0.94819 1.20918 0.97007 0.92828 0.96663 1.73853 1.06266 1.13623 1.15105 1.73159 1.13409 1.24674 0.95429 1.21599 0.95078 0.98080 0.85854 1.22024 0.93904 1.01467 0.98378 0.93850 0.91371 0.94227 0.81009 0.94795 0.92183 0.91432 0.84671 0.93836 0.79923 0.81325 0.80367 0.80558 0.82957 0.88677 0.92931 0.89586 0.90069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.10 8.44 71.98 0.61 -4.50 16 2 C 0.19 7.45 0.74 3.63 0.00 7.45 16 3 N -0.73 -35.85 4.13 -303.22 -1.25 -37.10 16 4 C -0.30 -16.31 8.68 84.03 0.73 -15.58 16 5 H 0.07 3.54 6.70 -2.91 -0.02 3.52 16 6 C -0.11 -6.37 5.50 84.86 0.47 -5.91 16 7 N -0.98 -62.57 13.70 21.65 0.30 -62.27 16 8 Si 1.12 53.62 29.92 68.60 2.05 55.68 16 9 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 C -0.13 -4.76 4.70 30.66 0.14 -4.61 16 13 C 0.10 3.90 5.63 86.35 0.49 4.39 16 14 N -0.58 -21.44 2.97 -822.27 -2.44 -23.89 16 15 C 0.57 20.37 7.65 86.81 0.66 21.04 16 16 O -0.56 -21.02 15.82 -3.87 -0.06 -21.09 16 17 C -0.03 -1.00 6.65 41.62 0.28 -0.73 16 18 C -0.02 -0.51 9.51 23.03 0.22 -0.29 16 19 C -0.08 -1.61 5.75 -21.28 -0.12 -1.73 16 20 C -0.10 -1.00 9.81 22.30 0.22 -0.79 16 21 C -0.08 -0.44 9.96 22.07 0.22 -0.22 16 22 C -0.07 -0.48 9.94 22.06 0.22 -0.26 16 23 C -0.10 -1.54 10.00 22.31 0.22 -1.31 16 24 C 0.05 1.25 6.69 40.27 0.27 1.52 16 25 N -0.23 -7.27 11.55 -51.93 -0.60 -7.87 16 26 N -0.21 -7.21 7.28 -48.75 -0.35 -7.56 16 27 C 0.12 4.17 6.17 86.36 0.53 4.70 16 28 C -0.12 -3.98 4.96 30.67 0.15 -3.83 16 29 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.04 1.55 7.27 -2.39 -0.02 1.53 16 32 H 0.36 18.64 5.29 -92.70 -0.49 18.15 16 33 H 0.24 15.33 6.77 -92.71 -0.63 14.71 16 34 H 0.06 2.44 7.31 -2.39 -0.02 2.42 16 35 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.14 5.18 4.00 -110.71 -0.44 4.73 16 37 H 0.04 2.08 7.74 -2.39 -0.02 2.06 16 38 H 0.18 3.45 7.72 -2.91 -0.02 3.43 16 39 H 0.17 0.74 8.06 -2.91 -0.02 0.72 16 40 H 0.18 -0.42 8.06 -2.91 -0.02 -0.45 16 41 H 0.18 -0.07 8.06 -2.91 -0.02 -0.09 16 42 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 43 H 0.09 3.21 7.00 -2.38 -0.02 3.19 16 44 H 0.05 2.12 6.94 -2.38 -0.02 2.10 16 45 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 46 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -77.09 367.13 3.19 -73.91 By element: Atomic # 1 Polarization: 30.62 SS G_CDS: 0.24 Total: 30.86 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: 5.31 Total: -0.66 kcal Atomic # 7 Polarization: -134.35 SS G_CDS: -4.35 Total: -138.70 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -0.06 Total: -21.09 kcal Atomic # 14 Polarization: 53.62 SS G_CDS: 2.05 Total: 55.68 kcal Total: -77.09 3.19 -73.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649462258.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.147 kcal (2) G-P(sol) polarization free energy of solvation -77.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds