Wall clock time and date at job start Tue Mar 31 2020 23:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32159 * 120.53973 * 2 1 4 4 C 1.31853 * 120.97085 * 180.02562 * 3 2 1 5 5 N 1.31890 * 122.09389 * 0.02562 * 4 3 2 6 6 C 1.32129 * 120.96618 * 359.97438 * 5 4 3 7 7 C 1.39930 * 120.53560 * 180.28614 * 2 1 3 8 8 C 1.47830 * 120.94312 * 0.02562 * 7 2 1 9 9 O 1.21561 * 120.00028 * 6.31591 * 8 7 2 10 10 N 1.34775 * 120.00473 * 186.32322 * 8 7 2 11 11 C 1.46497 * 120.00337 * 179.97438 * 10 8 7 12 12 C 1.50708 * 109.47244 * 179.97438 * 11 10 8 13 13 C 1.38230 * 119.99825 * 269.72838 * 12 11 10 14 14 C 1.38238 * 119.99978 * 179.76739 * 13 12 11 15 15 C 1.38234 * 119.99627 * 0.50021 * 14 13 12 16 16 C 1.50707 * 120.00040 * 179.72674 * 15 14 13 17 17 H 1.09000 * 109.46614 * 200.02756 * 16 15 14 18 18 C 1.52993 * 109.46786 * 80.02400 * 16 15 14 19 19 N 1.46495 * 109.46671 * 320.02405 * 16 15 14 20 20 C 1.36939 * 119.99706 * 204.99709 * 19 16 15 21 21 H 1.08000 * 120.00299 * 0.02562 * 20 19 16 22 22 C 1.38820 * 120.00218 * 180.02562 * 20 19 16 23 23 N 1.31624 * 119.99484 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00133 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47120 * 60.00239 * 24 22 20 26 26 H 1.48495 * 109.47147 * 180.02562 * 24 22 20 27 27 H 1.48508 * 109.47000 * 300.00019 * 24 22 20 28 28 C 1.38235 * 120.00298 * 359.75275 * 15 14 13 29 29 C 1.38234 * 119.99916 * 89.99600 * 12 11 10 30 30 H 1.08997 * 109.47238 * 96.31767 * 1 2 3 31 31 H 1.09004 * 109.47167 * 216.31770 * 1 2 3 32 32 H 1.08993 * 109.46980 * 336.31428 * 1 2 3 33 33 H 1.07999 * 118.95301 * 180.02562 * 4 3 2 34 34 H 1.08003 * 120.53970 * 180.02562 * 6 5 4 35 35 H 0.97007 * 119.99745 * 359.97438 * 10 8 7 36 36 H 1.08996 * 109.47012 * 299.99396 * 11 10 8 37 37 H 1.09001 * 109.47347 * 59.99325 * 11 10 8 38 38 H 1.07998 * 120.00396 * 359.97438 * 13 12 11 39 39 H 1.08000 * 120.00043 * 180.23014 * 14 13 12 40 40 H 1.08999 * 109.47493 * 60.00317 * 18 16 15 41 41 H 1.09003 * 109.46800 * 180.02562 * 18 16 15 42 42 H 1.08997 * 109.47344 * 299.99549 * 18 16 15 43 43 H 0.96998 * 120.00838 * 25.00470 * 19 16 15 44 44 H 0.96999 * 119.99685 * 179.97438 * 23 22 20 45 45 H 1.07997 * 120.00494 * 179.97438 * 28 15 14 46 46 H 1.08003 * 119.99971 * 0.02562 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1786 1.1383 0.0000 4 6 3.4971 1.1482 -0.0005 5 7 4.2062 0.0361 -0.0015 6 6 3.6165 -1.1462 -0.0016 7 6 2.2180 -1.2052 -0.0060 8 6 1.5121 -2.5041 -0.0131 9 8 0.3026 -2.5379 -0.1295 10 7 2.2095 -3.6508 0.1098 11 6 1.5099 -4.9379 0.1033 12 6 2.5109 -6.0546 0.2536 13 6 3.0810 -6.6272 -0.8679 14 6 4.0028 -7.6481 -0.7299 15 6 4.3465 -8.1034 0.5293 16 6 5.3467 -9.2206 0.6796 17 1 5.2340 -9.6794 1.6618 18 6 6.7630 -8.6594 0.5382 19 7 5.1142 -10.2271 -0.3592 20 6 5.5067 -11.5233 -0.1566 21 1 5.9872 -11.8037 0.7690 22 6 5.2869 -12.4770 -1.1411 23 7 4.7016 -12.1352 -2.2694 24 14 5.8216 -14.2453 -0.8645 25 1 5.1246 -14.7926 0.3271 26 1 5.4765 -15.0592 -2.0576 27 1 7.2894 -14.2898 -0.6433 28 6 3.7724 -7.5343 1.6506 29 6 2.8546 -6.5098 1.5128 30 1 -0.3633 -0.1131 -1.0214 31 1 -0.3634 -0.8281 0.6087 32 1 -0.3633 0.9410 0.4128 33 1 4.0128 2.0971 -0.0001 34 1 4.2039 -2.0525 -0.0020 35 1 3.1748 -3.6239 0.2024 36 1 0.8017 -4.9706 0.9312 37 1 0.9737 -5.0554 -0.8384 38 1 2.8090 -6.2747 -1.8518 39 1 4.4511 -8.0930 -1.6060 40 1 6.9360 -7.9105 1.3110 41 1 7.4865 -9.4676 0.6464 42 1 6.8757 -8.2007 -0.4441 43 1 4.6824 -9.9755 -1.1905 44 1 4.5484 -12.8015 -2.9575 45 1 4.0406 -7.8902 2.6343 46 1 2.4055 -6.0656 2.3888 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672933505.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:54 Heat of formation + Delta-G solvation = 48.188215 kcal Electronic energy + Delta-G solvation = -27633.909261 eV Core-core repulsion = 23716.805177 eV Total energy + Delta-G solvation = -3917.104085 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.75850 -39.93085 -39.16043 -36.18060 -35.14650 -34.44387 -33.23269 -32.33933 -30.80485 -30.48540 -29.05374 -28.31964 -26.44151 -25.25664 -23.93895 -23.34429 -22.65663 -21.76476 -21.29554 -19.80016 -18.43781 -18.23315 -17.47381 -17.26434 -16.18788 -16.00235 -15.78124 -15.40040 -15.00248 -14.74674 -14.57295 -14.34552 -14.11908 -13.56761 -13.45866 -13.45101 -13.33680 -13.16790 -13.07775 -12.71084 -12.55720 -12.34674 -12.07528 -11.98091 -11.60970 -11.28097 -11.07140 -10.97446 -10.85995 -10.67842 -10.36615 -10.17022 -10.12200 -10.05732 -9.79943 -9.72063 -9.41090 -9.01571 -8.71907 -8.40631 -7.04424 -5.82515 -3.11530 -0.05122 0.51554 1.36509 1.61048 2.41896 2.80227 3.29398 3.40561 3.45140 3.46042 3.52654 3.55713 3.84335 3.97408 4.22257 4.39147 4.54516 4.61977 4.78565 4.90052 5.00440 5.13823 5.22972 5.29294 5.32240 5.39016 5.49613 5.51446 5.61047 5.65822 5.71524 5.89162 5.89263 5.96089 6.04604 6.17985 6.24710 6.28975 6.38948 6.44265 6.55683 6.64198 6.69697 6.89580 7.05478 7.09872 7.20238 7.50141 7.64240 7.73923 8.35733 9.47058 10.02122 10.37187 11.39971 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.024198 B = 0.001864 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.836012 B =15017.118458 C =15483.750853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.236 3.764 3 N -0.526 5.526 4 C 0.319 3.681 5 N -0.527 5.527 6 C 0.188 3.812 7 C -0.247 4.247 8 C 0.567 3.433 9 O -0.526 6.526 10 N -0.716 5.716 11 C 0.168 3.832 12 C -0.134 4.134 13 C -0.098 4.098 14 C -0.106 4.106 15 C -0.051 4.051 16 C 0.203 3.797 17 H 0.056 0.944 18 C -0.159 4.159 19 N -0.721 5.721 20 C -0.241 4.241 21 H 0.071 0.929 22 C -0.012 4.012 23 N -0.932 5.932 24 Si 0.908 3.092 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 C -0.121 4.121 29 C -0.101 4.101 30 H 0.092 0.908 31 H 0.107 0.893 32 H 0.076 0.924 33 H 0.202 0.798 34 H 0.172 0.828 35 H 0.401 0.599 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.119 0.881 39 H 0.129 0.871 40 H 0.038 0.962 41 H 0.057 0.943 42 H 0.048 0.952 43 H 0.385 0.615 44 H 0.256 0.744 45 H 0.121 0.879 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.629 25.054 6.189 26.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.090 3.910 3 N -0.241 5.241 4 C 0.032 3.968 5 N -0.241 5.241 6 C 0.021 3.979 7 C -0.255 4.255 8 C 0.353 3.647 9 O -0.404 6.404 10 N -0.367 5.367 11 C 0.046 3.954 12 C -0.135 4.135 13 C -0.116 4.116 14 C -0.124 4.124 15 C -0.052 4.052 16 C 0.093 3.907 17 H 0.074 0.926 18 C -0.220 4.220 19 N -0.363 5.363 20 C -0.372 4.372 21 H 0.089 0.911 22 C -0.208 4.208 23 N -0.580 5.580 24 Si 0.739 3.261 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.212 1.212 28 C -0.140 4.140 29 C -0.120 4.120 30 H 0.110 0.890 31 H 0.125 0.875 32 H 0.095 0.905 33 H 0.219 0.781 34 H 0.189 0.811 35 H 0.236 0.764 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.137 0.863 39 H 0.147 0.853 40 H 0.057 0.943 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.220 0.780 44 H 0.066 0.934 45 H 0.139 0.861 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.990 25.702 6.145 26.893 hybrid contribution 0.435 -1.793 -0.214 1.857 sum -4.555 23.909 5.932 25.052 Atomic orbital electron populations 1.21106 0.86444 1.04536 1.04867 1.22041 0.98262 0.86462 0.84278 1.68448 1.10296 1.29718 1.15629 1.25279 0.86764 0.97346 0.87372 1.68480 1.41478 0.98942 1.15190 1.23525 0.90816 0.96843 0.86725 1.21629 0.96274 0.96248 1.11306 1.17743 0.86903 0.83065 0.76991 1.90766 1.13279 1.86956 1.49371 1.46066 1.11146 1.05600 1.73907 1.20210 0.92939 0.79126 1.03132 1.19613 1.00683 0.99296 0.93916 1.21026 0.96442 0.96421 0.97749 1.21103 0.97423 0.95960 0.97918 1.20558 0.96107 0.95626 0.92914 1.19259 0.90321 0.86904 0.94185 0.92600 1.22423 0.99235 1.00072 1.00243 1.42511 1.71950 1.05105 1.16772 1.19192 1.32096 0.85178 1.00774 0.91111 1.24752 1.01377 0.98223 0.96480 1.69647 1.47867 1.33612 1.06873 0.86253 0.78250 0.84712 0.76870 1.21235 1.21674 1.21233 1.21026 0.97511 0.96944 0.98522 1.20929 0.97718 0.97104 0.96231 0.88962 0.87510 0.90498 0.78110 0.81082 0.76358 0.90429 0.90331 0.86270 0.85320 0.94328 0.92357 0.93321 0.77991 0.93380 0.86074 0.86446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 8.97 36.01 0.32 -0.59 16 2 C 0.24 2.19 6.87 -81.82 -0.56 1.63 16 3 N -0.53 -4.81 10.36 -10.48 -0.11 -4.92 16 4 C 0.32 2.47 12.27 -92.02 -1.13 1.34 16 5 N -0.53 -4.52 10.42 -14.24 -0.15 -4.66 16 6 C 0.19 1.45 10.80 -16.77 -0.18 1.27 16 7 C -0.25 -2.18 5.91 -104.69 -0.62 -2.80 16 8 C 0.57 5.52 7.72 -12.34 -0.10 5.42 16 9 O -0.53 -6.39 13.55 5.31 0.07 -6.32 16 10 N -0.72 -5.99 5.50 -62.43 -0.34 -6.33 16 11 C 0.17 1.62 5.80 -5.19 -0.03 1.59 16 12 C -0.13 -1.51 5.25 -104.62 -0.55 -2.06 16 13 C -0.10 -1.25 9.70 -39.58 -0.38 -1.64 16 14 C -0.11 -1.66 9.06 -39.58 -0.36 -2.02 16 15 C -0.05 -0.83 4.95 -104.62 -0.52 -1.34 16 16 C 0.20 3.86 3.09 -69.09 -0.21 3.65 16 17 H 0.06 1.08 7.94 -51.93 -0.41 0.66 16 18 C -0.16 -2.74 9.47 37.15 0.35 -2.39 16 19 N -0.72 -17.39 5.07 -54.55 -0.28 -17.67 16 20 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16 21 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 22 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 23 N -0.93 -27.53 13.06 55.49 0.72 -26.80 16 24 Si 0.91 21.98 29.55 -169.99 -5.02 16.95 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 27 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 28 C -0.12 -1.65 9.67 -39.58 -0.38 -2.04 16 29 C -0.10 -1.17 9.70 -39.58 -0.38 -1.55 16 30 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.11 0.96 5.99 -51.93 -0.31 0.65 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.20 0.84 8.06 -52.49 -0.42 0.42 16 34 H 0.17 0.86 6.58 -52.48 -0.35 0.51 16 35 H 0.40 2.64 6.64 -40.82 -0.27 2.37 16 36 H 0.08 0.75 8.09 -51.93 -0.42 0.33 16 37 H 0.08 0.79 8.08 -51.93 -0.42 0.37 16 38 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 39 H 0.13 2.20 6.92 -52.49 -0.36 1.84 16 40 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.38 9.78 6.06 -40.82 -0.25 9.53 16 44 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 45 H 0.12 1.48 8.04 -52.49 -0.42 1.05 16 46 H 0.12 1.11 8.06 -52.48 -0.42 0.68 16 LS Contribution 388.86 15.07 5.86 5.86 Total: -1.00 -32.26 388.86 -10.36 -42.62 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -6.14 Total: 9.89 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: -4.98 Total: -8.62 kcal Atomic # 7 Polarization: -60.23 SS G_CDS: -0.15 Total: -60.38 kcal Atomic # 8 Polarization: -6.39 SS G_CDS: 0.07 Total: -6.32 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.26 -10.36 -42.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672933505.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.806 kcal (2) G-P(sol) polarization free energy of solvation -32.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds