Wall clock time and date at job start Tue Mar 31 2020 23:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32159 * 120.53973 * 2 1 4 4 C 1.31853 * 120.97085 * 180.02562 * 3 2 1 5 5 N 1.31890 * 122.09389 * 0.02562 * 4 3 2 6 6 C 1.32129 * 120.96618 * 359.97438 * 5 4 3 7 7 C 1.39930 * 120.53560 * 180.28614 * 2 1 3 8 8 C 1.47830 * 120.94312 * 0.02562 * 7 2 1 9 9 O 1.21561 * 120.00028 * 6.31591 * 8 7 2 10 10 N 1.34775 * 120.00473 * 186.32322 * 8 7 2 11 11 C 1.46497 * 120.00337 * 179.97438 * 10 8 7 12 12 C 1.50708 * 109.47244 * 179.97438 * 11 10 8 13 13 C 1.38230 * 119.99825 * 269.72838 * 12 11 10 14 14 C 1.38238 * 119.99978 * 179.76739 * 13 12 11 15 15 C 1.38234 * 119.99627 * 0.50021 * 14 13 12 16 16 C 1.50707 * 120.00040 * 179.72674 * 15 14 13 17 17 H 1.09000 * 109.46614 * 200.02756 * 16 15 14 18 18 C 1.52993 * 109.46786 * 80.02400 * 16 15 14 19 19 N 1.46495 * 109.46671 * 320.02405 * 16 15 14 20 20 C 1.36939 * 119.99706 * 204.99709 * 19 16 15 21 21 H 1.08000 * 120.00299 * 0.02562 * 20 19 16 22 22 C 1.38820 * 120.00218 * 180.02562 * 20 19 16 23 23 N 1.31624 * 119.99484 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00133 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47120 * 60.00239 * 24 22 20 26 26 H 1.48495 * 109.47147 * 180.02562 * 24 22 20 27 27 H 1.48508 * 109.47000 * 300.00019 * 24 22 20 28 28 C 1.38235 * 120.00298 * 359.75275 * 15 14 13 29 29 C 1.38234 * 119.99916 * 89.99600 * 12 11 10 30 30 H 1.08997 * 109.47238 * 96.31767 * 1 2 3 31 31 H 1.09004 * 109.47167 * 216.31770 * 1 2 3 32 32 H 1.08993 * 109.46980 * 336.31428 * 1 2 3 33 33 H 1.07999 * 118.95301 * 180.02562 * 4 3 2 34 34 H 1.08003 * 120.53970 * 180.02562 * 6 5 4 35 35 H 0.97007 * 119.99745 * 359.97438 * 10 8 7 36 36 H 1.08996 * 109.47012 * 299.99396 * 11 10 8 37 37 H 1.09001 * 109.47347 * 59.99325 * 11 10 8 38 38 H 1.07998 * 120.00396 * 359.97438 * 13 12 11 39 39 H 1.08000 * 120.00043 * 180.23014 * 14 13 12 40 40 H 1.08999 * 109.47493 * 60.00317 * 18 16 15 41 41 H 1.09003 * 109.46800 * 180.02562 * 18 16 15 42 42 H 1.08997 * 109.47344 * 299.99549 * 18 16 15 43 43 H 0.96998 * 120.00838 * 25.00470 * 19 16 15 44 44 H 0.96999 * 119.99685 * 179.97438 * 23 22 20 45 45 H 1.07997 * 120.00494 * 179.97438 * 28 15 14 46 46 H 1.08003 * 119.99971 * 0.02562 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1786 1.1383 0.0000 4 6 3.4971 1.1482 -0.0005 5 7 4.2062 0.0361 -0.0015 6 6 3.6165 -1.1462 -0.0016 7 6 2.2180 -1.2052 -0.0060 8 6 1.5121 -2.5041 -0.0131 9 8 0.3026 -2.5379 -0.1295 10 7 2.2095 -3.6508 0.1098 11 6 1.5099 -4.9379 0.1033 12 6 2.5109 -6.0546 0.2536 13 6 3.0810 -6.6272 -0.8679 14 6 4.0028 -7.6481 -0.7299 15 6 4.3465 -8.1034 0.5293 16 6 5.3467 -9.2206 0.6796 17 1 5.2340 -9.6794 1.6618 18 6 6.7630 -8.6594 0.5382 19 7 5.1142 -10.2271 -0.3592 20 6 5.5067 -11.5233 -0.1566 21 1 5.9872 -11.8037 0.7690 22 6 5.2869 -12.4770 -1.1411 23 7 4.7016 -12.1352 -2.2694 24 14 5.8216 -14.2453 -0.8645 25 1 5.1246 -14.7926 0.3271 26 1 5.4765 -15.0592 -2.0576 27 1 7.2894 -14.2898 -0.6433 28 6 3.7724 -7.5343 1.6506 29 6 2.8546 -6.5098 1.5128 30 1 -0.3633 -0.1131 -1.0214 31 1 -0.3634 -0.8281 0.6087 32 1 -0.3633 0.9410 0.4128 33 1 4.0128 2.0971 -0.0001 34 1 4.2039 -2.0525 -0.0020 35 1 3.1748 -3.6239 0.2024 36 1 0.8017 -4.9706 0.9312 37 1 0.9737 -5.0554 -0.8384 38 1 2.8090 -6.2747 -1.8518 39 1 4.4511 -8.0930 -1.6060 40 1 6.9360 -7.9105 1.3110 41 1 7.4865 -9.4676 0.6464 42 1 6.8757 -8.2007 -0.4441 43 1 4.6824 -9.9755 -1.1905 44 1 4.5484 -12.8015 -2.9575 45 1 4.0406 -7.8902 2.6343 46 1 2.4055 -6.0656 2.3888 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672933505.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:54 Heat of formation + Delta-G solvation = 28.770011 kcal Electronic energy + Delta-G solvation = -27634.751298 eV Core-core repulsion = 23716.805177 eV Total energy + Delta-G solvation = -3917.946121 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.39322 -40.82274 -40.12372 -37.46836 -36.11341 -35.27353 -34.23216 -33.72067 -31.93607 -31.67180 -30.18817 -29.52897 -27.33622 -26.15176 -25.65723 -24.04251 -23.73819 -22.95279 -22.04020 -21.09359 -19.40147 -19.13242 -18.87176 -17.85647 -17.23405 -16.88933 -16.80224 -16.51502 -16.20091 -15.88928 -15.54002 -15.38681 -15.01585 -14.98125 -14.64835 -14.45951 -14.24674 -14.17224 -13.96379 -13.82490 -13.53239 -13.46233 -13.26041 -12.94778 -12.75477 -12.73133 -12.70173 -12.45486 -12.19514 -12.00344 -11.70417 -11.59068 -11.51894 -11.00857 -10.90979 -10.80130 -10.42375 -10.14383 -9.76943 -9.53541 -9.01849 -7.93871 -5.22039 -0.67297 -0.10838 0.31535 0.55367 1.47464 1.50019 1.55963 1.70915 2.03503 2.56385 2.66660 2.90972 2.96022 3.03625 3.25611 3.40455 3.58364 3.65472 3.80704 3.89416 4.01157 4.05713 4.18249 4.26478 4.37894 4.41292 4.55870 4.61710 4.67238 4.72546 4.78603 4.78830 4.82370 5.01224 5.02482 5.08840 5.13965 5.23947 5.24223 5.36240 5.43716 5.50700 5.57856 5.64797 5.77979 5.86310 6.11825 6.28510 6.37273 6.89916 7.03223 7.34636 8.09998 8.33469 9.29415 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.024198 B = 0.001864 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.836012 B =15017.118458 C =15483.750853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.224 3.776 3 N -0.541 5.541 4 C 0.318 3.682 5 N -0.541 5.541 6 C 0.193 3.807 7 C -0.256 4.256 8 C 0.571 3.429 9 O -0.553 6.553 10 N -0.705 5.705 11 C 0.174 3.826 12 C -0.117 4.117 13 C -0.097 4.097 14 C -0.124 4.124 15 C -0.073 4.073 16 C 0.198 3.802 17 H 0.053 0.947 18 C -0.148 4.148 19 N -0.735 5.735 20 C -0.239 4.239 21 H 0.077 0.923 22 C -0.077 4.077 23 N -0.970 5.970 24 Si 0.972 3.028 25 H -0.278 1.278 26 H -0.298 1.298 27 H -0.278 1.278 28 C -0.122 4.122 29 C -0.091 4.091 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.232 0.768 34 H 0.197 0.803 35 H 0.412 0.588 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.133 0.867 39 H 0.102 0.898 40 H 0.071 0.929 41 H 0.040 0.960 42 H 0.041 0.959 43 H 0.374 0.626 44 H 0.250 0.750 45 H 0.136 0.864 46 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.502 26.649 7.905 28.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.078 3.922 3 N -0.256 5.256 4 C 0.033 3.967 5 N -0.255 5.255 6 C 0.026 3.974 7 C -0.263 4.263 8 C 0.357 3.643 9 O -0.433 6.433 10 N -0.357 5.357 11 C 0.051 3.949 12 C -0.117 4.117 13 C -0.115 4.115 14 C -0.143 4.143 15 C -0.074 4.074 16 C 0.090 3.910 17 H 0.071 0.929 18 C -0.208 4.208 19 N -0.376 5.376 20 C -0.371 4.371 21 H 0.095 0.905 22 C -0.269 4.269 23 N -0.620 5.620 24 Si 0.801 3.199 25 H -0.205 1.205 26 H -0.224 1.224 27 H -0.204 1.204 28 C -0.141 4.141 29 C -0.109 4.109 30 H 0.109 0.891 31 H 0.115 0.885 32 H 0.104 0.896 33 H 0.248 0.752 34 H 0.214 0.786 35 H 0.249 0.751 36 H 0.103 0.897 37 H 0.094 0.906 38 H 0.151 0.849 39 H 0.120 0.880 40 H 0.090 0.910 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.208 0.792 44 H 0.059 0.941 45 H 0.154 0.846 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -4.823 27.327 7.913 28.856 hybrid contribution 0.389 -2.123 -0.685 2.265 sum -4.434 25.204 7.228 26.593 Atomic orbital electron populations 1.21044 0.86143 1.04600 1.04648 1.22256 0.98781 0.86914 0.84296 1.68503 1.11012 1.29676 1.16428 1.25927 0.86496 0.98399 0.85926 1.68573 1.41706 0.99390 1.15843 1.23923 0.90530 0.97603 0.85327 1.21547 0.96749 0.95578 1.12460 1.17820 0.86543 0.83476 0.76417 1.90761 1.14473 1.87318 1.50731 1.45891 1.11619 1.04821 1.73383 1.20113 0.92450 0.78904 1.03393 1.19729 0.99729 0.98912 0.93338 1.21140 0.95641 0.95570 0.99184 1.20971 0.98955 0.97406 0.96975 1.20322 0.96956 0.95997 0.94130 1.19433 0.92222 0.86984 0.92388 0.92863 1.22251 0.97407 1.00133 1.01021 1.42721 1.71842 1.05349 1.17706 1.19597 1.30487 0.86468 1.00504 0.90522 1.25542 1.02629 1.02145 0.96600 1.69809 1.50063 1.34390 1.07777 0.85236 0.78104 0.80113 0.76462 1.20462 1.22402 1.20409 1.21192 0.97466 0.97194 0.98211 1.21233 0.96451 0.95918 0.97344 0.89061 0.88451 0.89575 0.75161 0.78634 0.75122 0.89705 0.90610 0.84927 0.87969 0.91022 0.94052 0.94025 0.79230 0.94121 0.84568 0.83367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.68 8.97 71.24 0.64 -1.04 16 2 C 0.22 3.90 6.87 42.92 0.29 4.20 16 3 N -0.54 -9.13 10.36 -187.06 -1.94 -11.07 16 4 C 0.32 4.30 12.27 180.84 2.22 6.52 16 5 N -0.54 -8.11 10.42 -198.97 -2.07 -10.18 16 6 C 0.19 2.54 10.80 85.07 0.92 3.46 16 7 C -0.26 -4.09 5.91 -19.91 -0.12 -4.21 16 8 C 0.57 10.08 7.72 86.78 0.67 10.75 16 9 O -0.55 -12.79 13.55 -3.91 -0.05 -12.84 16 10 N -0.71 -9.92 5.50 -469.71 -2.59 -12.51 16 11 C 0.17 2.87 5.80 85.64 0.50 3.37 16 12 C -0.12 -2.30 5.25 -19.86 -0.10 -2.41 16 13 C -0.10 -2.36 9.70 22.27 0.22 -2.14 16 14 C -0.12 -3.93 9.06 22.27 0.20 -3.73 16 15 C -0.07 -2.33 4.95 -19.86 -0.10 -2.43 16 16 C 0.20 7.53 3.09 44.25 0.14 7.67 16 17 H 0.05 2.03 7.94 -2.39 -0.02 2.01 16 18 C -0.15 -5.03 9.47 71.98 0.68 -4.35 16 19 N -0.73 -36.33 5.07 -326.50 -1.66 -37.98 16 20 C -0.24 -13.05 9.93 84.03 0.83 -12.21 16 21 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 22 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 23 N -0.97 -59.00 13.06 21.65 0.28 -58.72 16 24 Si 0.97 45.81 29.55 68.60 2.03 47.84 16 25 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 26 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 27 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 28 C -0.12 -3.04 9.67 22.27 0.22 -2.83 16 29 C -0.09 -1.80 9.70 22.27 0.22 -1.58 16 30 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.10 1.72 5.99 -2.39 -0.01 1.71 16 32 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.23 1.36 8.06 -2.91 -0.02 1.34 16 34 H 0.20 1.37 6.58 -2.91 -0.02 1.35 16 35 H 0.41 4.12 6.64 -92.70 -0.62 3.50 16 36 H 0.08 1.36 8.09 -2.39 -0.02 1.34 16 37 H 0.08 1.36 8.08 -2.39 -0.02 1.34 16 38 H 0.13 2.82 8.06 -2.91 -0.02 2.79 16 39 H 0.10 3.72 6.92 -2.91 -0.02 3.70 16 40 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.37 19.86 6.06 -92.71 -0.56 19.29 16 44 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 45 H 0.14 2.93 8.04 -2.91 -0.02 2.91 16 46 H 0.15 2.08 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -70.74 388.86 1.74 -69.00 By element: Atomic # 1 Polarization: 31.50 SS G_CDS: -0.15 Total: 31.35 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: 7.89 Total: -4.89 kcal Atomic # 7 Polarization: -122.49 SS G_CDS: -7.97 Total: -130.46 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: -0.05 Total: -12.84 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -70.74 1.74 -69.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672933505.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.774 kcal (2) G-P(sol) polarization free energy of solvation -70.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds