Wall clock time and date at job start Tue Mar 31 2020 23:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30377 * 125.96708 * 2 1 4 4 N 1.39914 * 109.02612 * 180.28104 * 3 2 1 5 5 C 1.46497 * 125.74589 * 179.76024 * 4 3 2 6 6 C 1.34417 * 108.50982 * 359.73520 * 4 3 2 7 7 F 1.35102 * 126.34398 * 180.02562 * 6 4 3 8 8 C 1.38503 * 107.31506 * 0.02562 * 6 4 3 9 9 C 1.47163 * 126.45915 * 179.97438 * 8 6 4 10 10 O 1.21634 * 120.00353 * 90.01849 * 9 8 6 11 11 N 1.34787 * 119.99717 * 270.01906 * 9 8 6 12 12 C 1.46924 * 120.63033 * 359.72152 * 11 9 8 13 13 C 1.53187 * 108.77642 * 126.66473 * 12 11 9 14 14 C 1.53041 * 109.31211 * 54.63373 * 13 12 11 15 15 O 1.42909 * 109.44696 * 58.64948 * 14 13 12 16 16 C 1.52994 * 109.46090 * 178.61149 * 14 13 12 17 17 N 1.46501 * 109.47543 * 305.06920 * 16 14 13 18 18 C 1.36933 * 120.00446 * 179.97438 * 17 16 14 19 19 H 1.08005 * 119.99794 * 0.02562 * 18 17 16 20 20 C 1.38806 * 120.00384 * 180.02562 * 18 17 16 21 21 N 1.31624 * 119.99931 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 120.00152 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46858 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47338 * 119.99899 * 22 20 18 25 25 H 1.48505 * 109.46823 * 239.99609 * 22 20 18 26 26 C 1.53038 * 109.53768 * 298.63806 * 14 13 12 27 27 C 1.46926 * 120.62918 * 180.02562 * 11 9 8 28 28 H 1.08999 * 109.46987 * 270.14891 * 1 2 3 29 29 H 1.09001 * 109.46904 * 30.15363 * 1 2 3 30 30 H 1.09005 * 109.46923 * 150.14809 * 1 2 3 31 31 H 1.08999 * 109.46897 * 269.97126 * 5 4 3 32 32 H 1.08996 * 109.47635 * 29.97356 * 5 4 3 33 33 H 1.09002 * 109.47145 * 149.97512 * 5 4 3 34 34 H 1.09003 * 109.58516 * 246.45674 * 12 11 9 35 35 H 1.09002 * 109.58479 * 6.87832 * 12 11 9 36 36 H 1.08999 * 109.49975 * 294.68379 * 13 12 11 37 37 H 1.08998 * 109.50042 * 174.58459 * 13 12 11 38 38 H 0.96695 * 113.99877 * 59.93613 * 15 14 13 39 39 H 1.09004 * 109.46773 * 65.07016 * 16 14 13 40 40 H 1.09002 * 109.47279 * 185.06724 * 16 14 13 41 41 H 0.96997 * 119.99638 * 0.02562 * 17 16 14 42 42 H 0.97002 * 119.99935 * 180.02562 * 21 20 18 43 43 H 1.08999 * 109.49677 * 301.40907 * 26 14 13 44 44 H 1.09006 * 109.49905 * 181.31860 * 26 14 13 45 45 H 1.09002 * 109.58798 * 353.11768 * 27 11 9 46 46 H 1.08996 * 109.58371 * 113.54749 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2727 1.0552 0.0000 4 7 3.6111 0.6475 -0.0065 5 6 4.7762 1.5356 -0.0135 6 6 3.6479 -0.6961 -0.0046 7 9 4.7577 -1.4667 -0.0088 8 6 2.3375 -1.1444 0.0025 9 6 1.8931 -2.5473 0.0062 10 8 1.7144 -3.1259 1.0611 11 7 1.6842 -3.1912 -1.1593 12 6 1.8899 -2.5039 -2.4415 13 6 2.8416 -3.3405 -3.3023 14 6 2.2892 -4.7617 -3.4325 15 8 0.9875 -4.7142 -4.0205 16 6 3.2194 -5.5908 -4.3202 17 7 3.3999 -4.9127 -5.6062 18 6 4.1978 -5.4712 -6.5688 19 1 4.6937 -6.4120 -6.3801 20 6 4.3693 -4.8284 -7.7870 21 7 3.7646 -3.6822 -8.0172 22 14 5.4572 -5.5908 -9.1004 23 1 6.0170 -6.8710 -8.5976 24 1 4.6527 -5.8475 -10.3219 25 1 6.5672 -4.6594 -9.4255 26 6 2.1995 -5.4050 -2.0468 27 6 1.2400 -4.5916 -1.1718 28 1 -0.3633 0.0027 1.0277 29 1 -0.3633 0.8886 -0.5162 30 1 -0.3633 -0.8914 -0.5116 31 1 5.0602 1.7542 -1.0429 32 1 4.5283 2.4644 0.5001 33 1 5.6072 1.0487 0.4969 34 1 0.9344 -2.3938 -2.9545 35 1 2.3267 -1.5212 -2.2634 36 1 3.8240 -3.3738 -2.8312 37 1 2.9272 -2.8913 -4.2917 38 1 0.9685 -4.3177 -4.9022 39 1 4.1862 -5.7022 -3.8292 40 1 2.7810 -6.5748 -4.4868 41 1 2.9549 -4.0677 -5.7755 42 1 3.8841 -3.2332 -8.8687 43 1 3.1879 -5.4189 -1.5875 44 1 1.8280 -6.4253 -2.1426 45 1 1.2480 -4.9866 -0.1559 46 1 0.2317 -4.6514 -1.5815 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674106950.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:43 Heat of formation + Delta-G solvation = -31.007752 kcal Electronic energy + Delta-G solvation = -31003.203966 eV Core-core repulsion = 26651.896462 eV Total energy + Delta-G solvation = -4351.307504 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.52469 -41.69482 -40.01691 -38.31906 -35.44437 -34.48924 -34.04534 -32.06341 -31.36698 -30.51818 -30.28041 -29.66170 -26.97919 -26.13155 -24.06865 -23.30522 -22.72718 -21.56270 -20.89522 -20.19702 -19.19483 -17.95974 -17.53626 -17.26296 -16.78713 -16.34453 -16.05065 -15.73531 -15.00515 -14.95658 -14.82519 -14.43180 -14.33115 -14.09660 -13.87879 -13.72242 -13.66996 -13.33970 -13.18852 -12.97465 -12.86164 -12.69253 -12.54330 -12.42012 -12.24433 -11.88587 -11.53307 -11.16342 -11.08089 -11.05897 -10.98235 -10.87285 -10.31029 -10.13681 -9.98517 -9.70053 -9.62512 -9.44053 -8.97835 -8.91226 -8.54355 -7.03110 -5.86314 -3.15114 1.10800 1.63416 1.99849 2.45766 3.07820 3.38191 3.44715 3.46372 3.56231 4.02898 4.46416 4.50991 4.54237 4.64299 4.71414 4.80106 4.87578 4.94218 4.99579 5.04789 5.17723 5.22664 5.33968 5.43542 5.45376 5.49354 5.53734 5.60521 5.66119 5.84988 5.88328 5.99018 6.03856 6.05659 6.13364 6.36141 6.38457 6.40158 6.58487 6.68797 6.70155 7.08305 7.39807 7.63669 8.07241 8.13507 8.32638 9.43768 9.97528 10.31866 11.36551 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.013256 B = 0.003172 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.669539 B = 8826.503667 C = 9838.517507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.132 3.868 3 N -0.270 5.270 4 N -0.374 5.374 5 C 0.092 3.908 6 C 0.294 3.706 7 F -0.086 7.086 8 C -0.284 4.284 9 C 0.599 3.401 10 O -0.537 6.537 11 N -0.595 5.595 12 C 0.116 3.884 13 C -0.157 4.157 14 C 0.131 3.869 15 O -0.561 6.561 16 C 0.128 3.872 17 N -0.730 5.730 18 C -0.239 4.239 19 H 0.071 0.929 20 C -0.012 4.012 21 N -0.934 5.934 22 Si 0.907 3.093 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.292 1.292 26 C -0.117 4.117 27 C 0.119 3.881 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.382 0.618 39 H 0.025 0.975 40 H 0.030 0.970 41 H 0.381 0.619 42 H 0.255 0.745 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.090 0.910 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.765 9.667 17.193 20.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.035 4.035 3 N -0.093 5.093 4 N -0.158 5.158 5 C -0.048 4.048 6 C 0.146 3.854 7 F -0.065 7.065 8 C -0.300 4.300 9 C 0.385 3.615 10 O -0.414 6.414 11 N -0.327 5.327 12 C -0.006 4.006 13 C -0.195 4.195 14 C 0.090 3.910 15 O -0.368 6.368 16 C 0.000 4.000 17 N -0.376 5.376 18 C -0.370 4.370 19 H 0.089 0.911 20 C -0.208 4.208 21 N -0.583 5.583 22 Si 0.738 3.262 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.219 1.219 26 C -0.155 4.155 27 C -0.003 4.003 28 H 0.105 0.895 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.105 0.895 32 H 0.119 0.881 33 H 0.110 0.890 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.110 0.890 38 H 0.231 0.769 39 H 0.043 0.957 40 H 0.048 0.952 41 H 0.215 0.785 42 H 0.065 0.935 43 H 0.096 0.904 44 H 0.102 0.898 45 H 0.108 0.892 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.688 10.271 18.225 21.242 hybrid contribution 1.392 -0.735 -1.591 2.238 sum -2.296 9.536 16.633 19.310 Atomic orbital electron populations 1.20323 0.85148 1.04200 1.03968 1.22189 0.97210 0.87934 0.96182 1.77308 0.84121 1.21127 1.26739 1.48666 1.07321 1.02594 1.57252 1.22094 0.83553 0.94576 1.04618 1.17779 0.83392 0.81866 1.02328 1.91680 1.49626 1.71516 1.93727 1.19611 0.90384 0.95674 1.24354 1.17060 0.76938 0.84036 0.83488 1.90774 1.52155 1.67601 1.30909 1.48090 1.65916 1.12981 1.05722 1.21684 1.00364 0.95403 0.83178 1.22535 0.99070 0.96570 1.01335 1.21280 0.83544 0.93669 0.92536 1.86367 1.28649 1.85332 1.36420 1.21331 0.95990 0.95130 0.87548 1.42337 1.58076 1.25571 1.11612 1.19258 1.20618 1.03706 0.93466 0.91101 1.24720 1.00800 0.97244 0.98019 1.69643 1.47293 1.16940 1.24412 0.86111 0.79876 0.78262 0.81901 1.20546 1.21785 1.21870 1.21861 1.00501 0.99749 0.93436 1.21580 0.98177 0.79507 1.01052 0.89501 0.89775 0.89859 0.89524 0.88121 0.88995 0.90442 0.90609 0.90942 0.89004 0.76878 0.95672 0.95218 0.78461 0.93496 0.90442 0.89836 0.89213 0.90317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 10.28 36.00 0.37 -0.30 16 2 C 0.13 1.54 7.26 -82.01 -0.60 0.94 16 3 N -0.27 -3.20 12.49 33.91 0.42 -2.77 16 4 N -0.37 -4.06 3.98 -67.94 -0.27 -4.33 16 5 C 0.09 0.58 11.43 59.85 0.68 1.27 16 6 C 0.29 3.71 8.59 -16.32 -0.14 3.57 16 7 F -0.09 -1.10 17.31 2.25 0.04 -1.07 16 8 C -0.28 -3.79 3.87 -104.97 -0.41 -4.20 16 9 C 0.60 8.88 7.24 -12.63 -0.09 8.79 16 10 O -0.54 -9.47 16.52 5.25 0.09 -9.38 16 11 N -0.59 -8.09 2.97 -174.11 -0.52 -8.61 16 12 C 0.12 1.52 6.10 -3.71 -0.02 1.50 16 13 C -0.16 -2.36 4.88 -26.61 -0.13 -2.49 16 14 C 0.13 2.04 0.71 -90.58 -0.06 1.98 16 15 O -0.56 -8.88 11.70 -35.23 -0.41 -9.30 16 16 C 0.13 2.48 5.43 -4.04 -0.02 2.46 16 17 N -0.73 -17.25 5.07 -59.91 -0.30 -17.55 16 18 C -0.24 -6.47 9.99 -15.06 -0.15 -6.62 16 19 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 20 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 21 N -0.93 -26.95 13.06 55.49 0.72 -26.22 16 22 Si 0.91 21.90 29.55 -169.99 -5.02 16.87 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 C -0.12 -1.60 5.11 -26.59 -0.14 -1.74 16 27 C 0.12 1.57 6.19 -3.69 -0.02 1.55 16 28 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.71 8.01 -51.93 -0.42 0.30 16 31 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.97 7.81 -51.93 -0.41 0.56 16 35 H 0.08 0.97 6.25 -51.93 -0.32 0.64 16 36 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.09 1.55 6.53 -51.93 -0.34 1.21 16 38 H 0.38 6.05 8.19 45.56 0.37 6.42 16 39 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.38 9.12 5.55 -40.82 -0.23 8.90 16 42 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.09 1.20 7.01 -51.93 -0.36 0.84 16 46 H 0.08 1.02 7.81 -51.93 -0.41 0.62 16 LS Contribution 381.27 15.07 5.75 5.75 Total: -1.00 -33.06 381.27 -6.21 -39.28 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -5.88 Total: 11.06 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: -0.82 Total: 6.28 kcal Atomic # 7 Polarization: -59.55 SS G_CDS: 0.06 Total: -59.49 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -0.33 Total: -18.67 kcal Atomic # 9 Polarization: -1.10 SS G_CDS: 0.04 Total: -1.07 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.06 -6.21 -39.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674106950.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.270 kcal (2) G-P(sol) polarization free energy of solvation -33.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds