Wall clock time and date at job start Tue Mar 31 2020 23:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35322 * 126.12460 * 2 1 4 4 C 1.39868 * 107.91769 * 180.14536 * 3 2 1 5 5 C 1.50705 * 125.89740 * 179.86264 * 4 3 2 6 6 N 1.46896 * 109.46933 * 94.71813 * 5 4 3 7 7 C 1.46899 * 110.99850 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.47162 * 324.99626 * 7 6 5 9 9 C 1.52999 * 109.47248 * 85.00174 * 7 6 5 10 10 C 1.53006 * 109.47163 * 204.99665 * 7 6 5 11 11 H 1.09000 * 109.47050 * 300.00030 * 10 7 6 12 12 C 1.52999 * 109.46626 * 59.99729 * 10 7 6 13 13 N 1.46492 * 109.47363 * 179.97438 * 10 7 6 14 14 C 1.34780 * 120.00132 * 154.99846 * 13 10 7 15 15 O 1.21273 * 119.99697 * 0.02562 * 14 13 10 16 16 C 1.50697 * 119.99941 * 179.97438 * 14 13 10 17 17 S 1.81000 * 109.47133 * 180.02562 * 16 14 13 18 18 C 1.76200 * 100.00114 * 180.02562 * 17 16 14 19 19 H 1.08001 * 120.00187 * 359.97438 * 18 17 16 20 20 C 1.38803 * 119.99920 * 180.02562 * 18 17 16 21 21 N 1.31624 * 119.99983 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99817 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47069 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47062 * 120.00061 * 22 20 18 25 25 H 1.48502 * 109.46988 * 239.99832 * 22 20 18 26 26 N 1.30831 * 108.20526 * 359.60240 * 4 3 2 27 27 N 1.34943 * 126.12894 * 179.70517 * 2 1 3 28 28 C 1.46505 * 126.03887 * 0.02562 * 27 2 1 29 29 H 1.08996 * 109.47246 * 270.29366 * 1 2 3 30 30 H 1.09001 * 109.47209 * 30.29468 * 1 2 3 31 31 H 1.09005 * 109.46783 * 150.29412 * 1 2 3 32 32 H 1.07997 * 126.04149 * 0.02562 * 3 2 1 33 33 H 1.08995 * 109.47167 * 334.71534 * 5 4 3 34 34 H 1.09002 * 109.46814 * 214.71604 * 5 4 3 35 35 H 1.00897 * 111.00145 * 56.04125 * 6 5 4 36 36 H 1.09002 * 109.46716 * 299.99732 * 9 7 6 37 37 H 1.09000 * 109.47486 * 59.99650 * 9 7 6 38 38 H 1.09001 * 109.47362 * 180.02562 * 9 7 6 39 39 H 1.09002 * 109.46719 * 180.02562 * 12 10 7 40 40 H 1.08993 * 109.47839 * 299.99931 * 12 10 7 41 41 H 1.09000 * 109.47160 * 60.00369 * 12 10 7 42 42 H 0.97006 * 119.99963 * 335.00232 * 13 10 7 43 43 H 1.09000 * 109.47591 * 300.00338 * 16 14 13 44 44 H 1.09007 * 109.47167 * 60.00308 * 16 14 13 45 45 H 0.96995 * 119.99973 * 179.97438 * 21 20 18 46 46 H 1.08995 * 109.46965 * 270.02543 * 28 27 2 47 47 H 1.09003 * 109.46798 * 30.01994 * 28 27 2 48 48 H 1.08995 * 109.47193 * 150.01839 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 3.6334 0.6560 -0.0034 5 6 4.8543 1.5396 -0.0075 6 7 5.3215 1.7355 1.3713 7 6 6.5128 2.5944 1.4064 8 1 7.1271 2.3997 0.5274 9 6 6.0828 4.0627 1.4133 10 6 7.3211 2.2939 2.6703 11 1 6.7068 2.4886 3.5494 12 6 7.7510 0.8255 2.6635 13 7 8.5094 3.1499 2.7051 14 6 9.0904 3.4488 3.8839 15 8 8.6298 3.0087 4.9158 16 6 10.3131 4.3290 3.9195 17 16 10.8532 4.5423 5.6339 18 6 12.2543 5.5817 5.3862 19 1 12.5317 5.8852 4.3876 20 6 13.0021 6.0094 6.4746 21 7 12.6642 5.6391 7.6916 22 14 14.4870 7.1119 6.2120 23 1 14.6517 7.3834 4.7614 24 1 14.2862 8.3932 6.9353 25 1 15.7032 6.4360 6.7309 26 7 3.6334 -0.6523 0.0033 27 7 2.3026 -1.0899 0.0056 28 6 1.8540 -2.4846 0.0123 29 1 -0.3633 0.0053 1.0276 30 1 -0.3634 0.8873 -0.5184 31 1 -0.3633 -0.8927 -0.5093 32 1 1.9740 2.1211 0.0004 33 1 4.6026 2.5050 -0.4464 34 1 5.6422 1.0678 -0.5946 35 1 5.5000 0.8505 1.8218 36 1 5.5069 4.2768 0.5129 37 1 5.4685 4.2574 2.2924 38 1 6.9667 4.7000 1.4389 39 1 8.3265 0.6113 3.5641 40 1 6.8672 0.1882 2.6375 41 1 8.3653 0.6309 1.7844 42 1 8.8780 3.5018 1.8796 43 1 11.1124 3.8642 3.3423 44 1 10.0732 5.3018 3.4901 45 1 13.1870 5.9377 8.4521 46 1 1.7419 -2.8252 1.0415 47 1 0.8958 -2.5604 -0.5019 48 1 2.5903 -3.1055 -0.4980 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674633699.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:38 Heat of formation + Delta-G solvation = 34.682624 kcal Electronic energy + Delta-G solvation = -26184.531241 eV Core-core repulsion = 22402.285461 eV Total energy + Delta-G solvation = -3782.245780 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.58337 -39.59671 -37.69069 -35.00159 -33.50454 -32.40805 -32.36095 -31.16636 -30.04767 -28.58724 -27.49171 -27.30208 -25.46419 -24.99434 -23.38062 -20.79923 -20.54640 -20.28299 -19.61772 -17.85815 -17.10627 -16.52415 -16.42700 -16.01098 -15.58575 -14.97582 -14.78940 -14.66822 -14.62806 -14.39194 -13.93009 -13.83407 -13.66958 -13.40071 -13.18875 -13.10680 -12.99367 -12.79596 -12.67629 -12.53300 -12.43869 -12.26968 -11.99005 -11.74789 -11.59139 -11.34357 -11.05381 -10.99555 -10.88536 -10.75099 -10.63778 -9.78114 -9.51270 -9.33884 -9.05731 -8.88239 -8.78083 -8.66824 -8.19994 -6.47095 -6.19674 -3.89754 1.51045 2.13720 2.40729 3.05204 3.14931 3.23108 3.29623 3.34201 3.69433 4.05192 4.18200 4.22478 4.24055 4.48332 4.55143 4.60883 4.71494 4.88672 4.92305 4.95299 5.02474 5.06608 5.15600 5.17590 5.21086 5.33199 5.36482 5.46591 5.48055 5.55010 5.60962 5.68825 5.70814 5.77142 5.85814 5.92505 6.05003 6.17245 6.17892 6.23644 6.33873 6.63973 6.68360 6.79251 7.09345 7.42471 7.62034 7.76298 8.37588 8.67365 9.25835 10.87829 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.035368 B = 0.001597 C = 0.001577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.489036 B =17533.677195 C =17747.086844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.077 3.923 3 C -0.253 4.253 4 C 0.081 3.919 5 C 0.143 3.857 6 N -0.676 5.676 7 C 0.080 3.920 8 H 0.050 0.950 9 C -0.140 4.140 10 C 0.143 3.857 11 H 0.097 0.903 12 C -0.169 4.169 13 N -0.731 5.731 14 C 0.534 3.466 15 O -0.516 6.516 16 C -0.153 4.153 17 S -0.060 6.060 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.918 3.082 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 N -0.293 5.293 27 N -0.374 5.374 28 C 0.100 3.900 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.147 0.853 33 H 0.093 0.907 34 H 0.045 0.955 35 H 0.348 0.652 36 H 0.054 0.946 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.055 0.945 42 H 0.397 0.603 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.268 0.732 46 H 0.075 0.925 47 H 0.085 0.915 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.909 -12.434 -21.198 34.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.050 4.050 3 C -0.283 4.283 4 C -0.085 4.085 5 C 0.012 3.988 6 N -0.311 5.311 7 C -0.030 4.030 8 H 0.068 0.932 9 C -0.198 4.198 10 C 0.037 3.963 11 H 0.115 0.885 12 C -0.228 4.228 13 N -0.386 5.386 14 C 0.320 3.680 15 O -0.390 6.390 16 C -0.304 4.304 17 S 0.166 5.834 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 N -0.116 5.116 27 N -0.157 5.157 28 C -0.041 4.041 29 H 0.099 0.901 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.165 0.835 33 H 0.111 0.889 34 H 0.063 0.937 35 H 0.169 0.831 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.230 0.770 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.077 0.923 46 H 0.093 0.907 47 H 0.104 0.896 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -24.418 -13.868 -19.141 33.985 hybrid contribution 1.790 1.325 -2.084 3.050 sum -22.628 -12.544 -21.225 33.465 Atomic orbital electron populations 1.20447 0.87346 1.03703 1.03438 1.21100 0.94670 0.87333 1.01911 1.21101 0.91530 0.99039 1.16591 1.22079 0.95696 0.91211 0.99556 1.20246 0.91205 0.97057 0.90288 1.60522 1.33909 1.20595 1.16115 1.21739 0.89866 0.94712 0.96675 0.93225 1.21802 1.01532 0.93947 1.02506 1.20925 0.86757 0.89843 0.98783 0.88518 1.22263 1.01600 0.95875 1.03027 1.45979 1.30364 1.53002 1.09214 1.20275 0.84432 0.80299 0.82974 1.90701 1.63485 1.52166 1.32623 1.23532 0.97415 1.01054 1.08392 1.85405 1.35081 1.65350 0.97524 1.22918 1.14195 1.35258 0.95955 0.90891 1.24990 0.97883 0.96276 0.94441 1.70026 1.38934 1.43150 0.98176 0.86122 0.81250 0.79757 0.78393 1.19627 1.20574 1.20591 1.77311 0.96510 1.12512 1.25314 1.48388 1.03754 1.05964 1.57567 1.21832 1.00880 0.77964 1.03430 0.90098 0.89575 0.91308 0.83504 0.88908 0.93662 0.83074 0.92712 0.91591 0.92084 0.91135 0.91962 0.92638 0.76963 0.89300 0.89231 0.92257 0.90682 0.89623 0.89309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.37 10.12 36.01 0.36 0.00 16 2 C 0.08 0.62 6.93 -82.26 -0.57 0.05 16 3 C -0.25 -2.35 10.65 -40.01 -0.43 -2.77 16 4 C 0.08 0.84 6.73 -82.41 -0.55 0.28 16 5 C 0.14 1.27 6.04 -4.98 -0.03 1.24 16 6 N -0.68 -6.62 6.30 -107.99 -0.68 -7.30 16 7 C 0.08 0.77 2.28 -67.71 -0.15 0.61 16 8 H 0.05 0.43 7.80 -51.93 -0.41 0.02 16 9 C -0.14 -1.34 9.26 37.16 0.34 -0.99 16 10 C 0.14 1.74 2.29 -67.93 -0.16 1.59 16 11 H 0.10 1.44 7.58 -51.93 -0.39 1.05 16 12 C -0.17 -1.98 9.25 37.16 0.34 -1.64 16 13 N -0.73 -9.76 4.38 -53.81 -0.24 -10.00 16 14 C 0.53 9.97 7.81 -10.99 -0.09 9.89 16 15 O -0.52 -11.78 15.52 5.56 0.09 -11.69 16 16 C -0.15 -3.10 6.16 36.00 0.22 -2.88 16 17 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 18 C -0.53 -15.34 9.50 30.94 0.29 -15.05 16 19 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.33 13.22 55.49 0.73 -25.60 16 22 Si 0.92 21.54 29.55 -169.99 -5.02 16.51 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 N -0.29 -3.33 12.58 33.67 0.42 -2.91 16 27 N -0.37 -3.33 4.01 -63.88 -0.26 -3.58 16 28 C 0.10 0.47 11.27 59.85 0.67 1.15 16 29 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.17 7.08 -51.93 -0.37 -0.20 16 32 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.09 0.71 7.43 -51.93 -0.39 0.32 16 34 H 0.05 0.39 8.06 -51.93 -0.42 -0.03 16 35 H 0.35 3.63 6.16 -39.29 -0.24 3.39 16 36 H 0.05 0.45 7.45 -51.93 -0.39 0.06 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.58 7.45 -51.93 -0.39 0.19 16 39 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.06 0.65 6.21 -51.93 -0.32 0.32 16 41 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.40 4.15 8.39 -40.82 -0.34 3.81 16 43 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 44 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 45 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 46 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 47 H 0.09 0.18 7.05 -51.93 -0.37 -0.19 16 48 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 409.35 15.07 6.17 6.17 Total: -1.00 -36.73 409.35 -8.62 -45.34 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -7.79 Total: 3.43 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: 0.17 Total: -6.52 kcal Atomic # 7 Polarization: -49.37 SS G_CDS: -0.02 Total: -49.38 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.09 Total: -11.69 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -36.73 -8.62 -45.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674633699.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.023 kcal (2) G-P(sol) polarization free energy of solvation -36.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds