Wall clock time and date at job start Tue Mar 31 2020 23:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35322 * 126.12460 * 2 1 4 4 C 1.39868 * 107.91769 * 180.14536 * 3 2 1 5 5 C 1.50705 * 125.89740 * 179.86264 * 4 3 2 6 6 N 1.46896 * 109.46933 * 94.71813 * 5 4 3 7 7 C 1.46899 * 110.99850 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.47162 * 324.99626 * 7 6 5 9 9 C 1.52999 * 109.47248 * 85.00174 * 7 6 5 10 10 C 1.53006 * 109.47163 * 204.99665 * 7 6 5 11 11 H 1.09000 * 109.47050 * 300.00030 * 10 7 6 12 12 C 1.52999 * 109.46626 * 59.99729 * 10 7 6 13 13 N 1.46492 * 109.47363 * 179.97438 * 10 7 6 14 14 C 1.34780 * 120.00132 * 154.99846 * 13 10 7 15 15 O 1.21273 * 119.99697 * 0.02562 * 14 13 10 16 16 C 1.50697 * 119.99941 * 179.97438 * 14 13 10 17 17 S 1.81000 * 109.47133 * 180.02562 * 16 14 13 18 18 C 1.76200 * 100.00114 * 180.02562 * 17 16 14 19 19 H 1.08001 * 120.00187 * 359.97438 * 18 17 16 20 20 C 1.38803 * 119.99920 * 180.02562 * 18 17 16 21 21 N 1.31624 * 119.99983 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99817 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47069 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47062 * 120.00061 * 22 20 18 25 25 H 1.48502 * 109.46988 * 239.99832 * 22 20 18 26 26 N 1.30831 * 108.20526 * 359.60240 * 4 3 2 27 27 N 1.34943 * 126.12894 * 179.70517 * 2 1 3 28 28 C 1.46505 * 126.03887 * 0.02562 * 27 2 1 29 29 H 1.08996 * 109.47246 * 270.29366 * 1 2 3 30 30 H 1.09001 * 109.47209 * 30.29468 * 1 2 3 31 31 H 1.09005 * 109.46783 * 150.29412 * 1 2 3 32 32 H 1.07997 * 126.04149 * 0.02562 * 3 2 1 33 33 H 1.08995 * 109.47167 * 334.71534 * 5 4 3 34 34 H 1.09002 * 109.46814 * 214.71604 * 5 4 3 35 35 H 1.00897 * 111.00145 * 56.04125 * 6 5 4 36 36 H 1.09002 * 109.46716 * 299.99732 * 9 7 6 37 37 H 1.09000 * 109.47486 * 59.99650 * 9 7 6 38 38 H 1.09001 * 109.47362 * 180.02562 * 9 7 6 39 39 H 1.09002 * 109.46719 * 180.02562 * 12 10 7 40 40 H 1.08993 * 109.47839 * 299.99931 * 12 10 7 41 41 H 1.09000 * 109.47160 * 60.00369 * 12 10 7 42 42 H 0.97006 * 119.99963 * 335.00232 * 13 10 7 43 43 H 1.09000 * 109.47591 * 300.00338 * 16 14 13 44 44 H 1.09007 * 109.47167 * 60.00308 * 16 14 13 45 45 H 0.96995 * 119.99973 * 179.97438 * 21 20 18 46 46 H 1.08995 * 109.46965 * 270.02543 * 28 27 2 47 47 H 1.09003 * 109.46798 * 30.01994 * 28 27 2 48 48 H 1.08995 * 109.47193 * 150.01839 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 3.6334 0.6560 -0.0034 5 6 4.8543 1.5396 -0.0075 6 7 5.3215 1.7355 1.3713 7 6 6.5128 2.5944 1.4064 8 1 7.1271 2.3997 0.5274 9 6 6.0828 4.0627 1.4133 10 6 7.3211 2.2939 2.6703 11 1 6.7068 2.4886 3.5494 12 6 7.7510 0.8255 2.6635 13 7 8.5094 3.1499 2.7051 14 6 9.0904 3.4488 3.8839 15 8 8.6298 3.0087 4.9158 16 6 10.3131 4.3290 3.9195 17 16 10.8532 4.5423 5.6339 18 6 12.2543 5.5817 5.3862 19 1 12.5317 5.8852 4.3876 20 6 13.0021 6.0094 6.4746 21 7 12.6642 5.6391 7.6916 22 14 14.4870 7.1119 6.2120 23 1 14.6517 7.3834 4.7614 24 1 14.2862 8.3932 6.9353 25 1 15.7032 6.4360 6.7309 26 7 3.6334 -0.6523 0.0033 27 7 2.3026 -1.0899 0.0056 28 6 1.8540 -2.4846 0.0123 29 1 -0.3633 0.0053 1.0276 30 1 -0.3634 0.8873 -0.5184 31 1 -0.3633 -0.8927 -0.5093 32 1 1.9740 2.1211 0.0004 33 1 4.6026 2.5050 -0.4464 34 1 5.6422 1.0678 -0.5946 35 1 5.5000 0.8505 1.8218 36 1 5.5069 4.2768 0.5129 37 1 5.4685 4.2574 2.2924 38 1 6.9667 4.7000 1.4389 39 1 8.3265 0.6113 3.5641 40 1 6.8672 0.1882 2.6375 41 1 8.3653 0.6309 1.7844 42 1 8.8780 3.5018 1.8796 43 1 11.1124 3.8642 3.3423 44 1 10.0732 5.3018 3.4901 45 1 13.1870 5.9377 8.4521 46 1 1.7419 -2.8252 1.0415 47 1 0.8958 -2.5604 -0.5019 48 1 2.5903 -3.1055 -0.4980 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674633699.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:37 Heat of formation + Delta-G solvation = 7.737612 kcal Electronic energy + Delta-G solvation = -26185.699664 eV Core-core repulsion = 22402.285461 eV Total energy + Delta-G solvation = -3783.414203 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.19802 -40.91631 -38.75387 -35.95891 -34.57921 -34.33674 -32.84580 -32.33030 -30.90447 -29.97041 -28.13015 -27.82382 -27.63722 -25.64095 -24.37233 -21.70771 -21.53966 -21.33054 -20.25850 -19.80188 -18.04203 -17.78009 -17.33386 -16.87461 -16.64551 -16.52519 -16.41348 -16.03736 -15.38957 -15.23324 -14.93811 -14.82350 -14.65323 -14.45138 -14.20751 -13.96915 -13.86484 -13.58458 -13.50843 -13.33092 -13.21012 -13.14920 -12.97019 -12.91577 -12.90275 -12.62207 -12.57478 -12.44063 -12.31410 -11.73166 -11.63728 -11.44831 -11.15067 -10.93763 -10.25469 -10.18287 -10.08157 -9.44652 -9.38976 -8.65414 -8.33904 -6.11714 0.89095 1.27635 1.42049 1.47449 1.58271 1.63434 1.64744 1.74760 2.24860 2.29514 3.00406 3.27491 3.36169 3.57408 3.59921 3.75042 3.93977 3.99393 4.09348 4.17941 4.27516 4.32913 4.36686 4.42662 4.45587 4.51417 4.54091 4.59050 4.63827 4.69446 4.76688 4.87361 4.90943 4.94012 4.98617 5.02923 5.08628 5.20325 5.29514 5.42683 5.43140 5.47289 5.69219 6.00341 6.17485 6.21024 6.28311 6.53103 6.77042 7.07582 7.27918 8.75625 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.035368 B = 0.001597 C = 0.001577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.489036 B =17533.677195 C =17747.086844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.078 3.922 3 C -0.279 4.279 4 C 0.067 3.933 5 C 0.147 3.853 6 N -0.682 5.682 7 C 0.092 3.908 8 H 0.072 0.928 9 C -0.139 4.139 10 C 0.144 3.856 11 H 0.067 0.933 12 C -0.163 4.163 13 N -0.704 5.704 14 C 0.537 3.463 15 O -0.565 6.565 16 C -0.129 4.129 17 S -0.153 6.153 18 C -0.546 4.546 19 H 0.083 0.917 20 C 0.013 3.987 21 N -0.912 5.912 22 Si 0.999 3.001 23 H -0.256 1.256 24 H -0.274 1.274 25 H -0.274 1.274 26 N -0.333 5.333 27 N -0.380 5.380 28 C 0.091 3.909 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.156 0.844 33 H 0.106 0.894 34 H 0.048 0.952 35 H 0.343 0.657 36 H 0.072 0.928 37 H 0.045 0.955 38 H 0.063 0.937 39 H 0.040 0.960 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.416 0.584 43 H 0.110 0.890 44 H 0.111 0.889 45 H 0.271 0.729 46 H 0.081 0.919 47 H 0.115 0.885 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.436 -12.066 -24.204 36.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.050 4.050 3 C -0.309 4.309 4 C -0.098 4.098 5 C 0.017 3.983 6 N -0.317 5.317 7 C -0.018 4.018 8 H 0.090 0.910 9 C -0.197 4.197 10 C 0.039 3.961 11 H 0.085 0.915 12 C -0.221 4.221 13 N -0.358 5.358 14 C 0.323 3.677 15 O -0.443 6.443 16 C -0.280 4.280 17 S 0.074 5.926 18 C -0.693 4.693 19 H 0.102 0.898 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.821 3.179 23 H -0.180 1.180 24 H -0.199 1.199 25 H -0.200 1.200 26 N -0.157 5.157 27 N -0.163 5.163 28 C -0.049 4.049 29 H 0.106 0.894 30 H 0.115 0.885 31 H 0.106 0.894 32 H 0.174 0.826 33 H 0.124 0.876 34 H 0.067 0.933 35 H 0.164 0.836 36 H 0.091 0.909 37 H 0.064 0.936 38 H 0.082 0.918 39 H 0.059 0.941 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.253 0.747 43 H 0.128 0.872 44 H 0.129 0.871 45 H 0.080 0.920 46 H 0.100 0.900 47 H 0.133 0.867 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -24.960 -13.511 -22.216 36.043 hybrid contribution 1.795 1.106 -1.233 2.442 sum -23.165 -12.405 -23.449 35.219 Atomic orbital electron populations 1.20582 0.84500 1.05256 1.04332 1.21722 0.96406 0.86789 1.00038 1.21385 0.91534 1.00054 1.17905 1.22342 0.96592 0.91257 0.99599 1.20281 0.90932 0.97564 0.89561 1.60531 1.33879 1.20339 1.16949 1.21628 0.89750 0.94787 0.95599 0.91005 1.21801 1.01604 0.93772 1.02475 1.20968 0.85973 0.89897 0.99251 0.91494 1.22186 1.02055 0.95578 1.02291 1.45675 1.29900 1.51881 1.08334 1.20037 0.84071 0.79923 0.83694 1.90694 1.64757 1.54136 1.34680 1.23370 0.98627 1.02873 1.03131 1.85606 1.36150 1.65947 1.04857 1.23250 1.14237 1.35227 0.96620 0.89849 1.26130 1.01311 0.97782 0.93940 1.70191 1.40618 1.44706 0.99330 0.84900 0.76602 0.77305 0.79097 1.17964 1.19948 1.19981 1.77216 0.98421 1.13163 1.26911 1.48738 1.03188 1.07454 1.56965 1.22146 1.02214 0.76187 1.04357 0.89353 0.88458 0.89356 0.82639 0.87598 0.93348 0.83648 0.90907 0.93586 0.91760 0.94124 0.90676 0.90809 0.74669 0.87218 0.87068 0.92024 0.90014 0.86665 0.89349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.50 10.12 71.24 0.72 0.22 16 2 C 0.08 1.15 6.93 41.41 0.29 1.44 16 3 C -0.28 -4.96 10.65 21.99 0.23 -4.72 16 4 C 0.07 1.36 6.73 43.10 0.29 1.65 16 5 C 0.15 2.41 6.04 85.56 0.52 2.93 16 6 N -0.68 -12.64 6.30 -495.57 -3.12 -15.76 16 7 C 0.09 1.60 2.28 44.92 0.10 1.70 16 8 H 0.07 0.99 7.80 -2.39 -0.02 0.97 16 9 C -0.14 -2.40 9.26 71.98 0.67 -1.73 16 10 C 0.14 3.44 2.29 44.99 0.10 3.54 16 11 H 0.07 2.06 7.58 -2.39 -0.02 2.04 16 12 C -0.16 -3.72 9.25 71.98 0.67 -3.06 16 13 N -0.70 -17.83 4.38 -442.55 -1.94 -19.77 16 14 C 0.54 19.99 7.81 87.66 0.68 20.67 16 15 O -0.56 -26.71 15.52 -3.01 -0.05 -26.75 16 16 C -0.13 -5.11 6.16 71.23 0.44 -4.68 16 17 S -0.15 -8.57 20.57 -56.49 -1.16 -9.73 16 18 C -0.55 -31.35 9.50 67.96 0.65 -30.71 16 19 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 20 C 0.01 0.74 5.49 84.86 0.47 1.21 16 21 N -0.91 -56.51 13.22 21.65 0.29 -56.22 16 22 Si 1.00 43.87 29.55 68.60 2.03 45.90 16 23 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 24 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 25 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 26 N -0.33 -7.46 12.58 -47.38 -0.60 -8.06 16 27 N -0.38 -6.40 4.01 -356.03 -1.43 -7.83 16 28 C 0.09 0.72 11.27 127.77 1.44 2.17 16 29 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.09 0.16 7.08 -2.38 -0.02 0.14 16 32 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 33 H 0.11 1.41 7.43 -2.39 -0.02 1.39 16 34 H 0.05 0.76 8.06 -2.39 -0.02 0.74 16 35 H 0.34 6.97 6.16 -89.70 -0.55 6.42 16 36 H 0.07 1.01 7.45 -2.39 -0.02 0.99 16 37 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.06 1.06 7.45 -2.39 -0.02 1.04 16 39 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.07 1.53 6.21 -2.39 -0.01 1.51 16 41 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.42 7.49 8.39 -92.70 -0.78 6.71 16 43 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 44 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 45 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 46 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 47 H 0.12 0.19 7.05 -2.39 -0.02 0.17 16 48 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -83.41 409.35 0.92 -82.49 By element: Atomic # 1 Polarization: 25.46 SS G_CDS: -0.36 Total: 25.10 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: 7.26 Total: -9.36 kcal Atomic # 7 Polarization: -100.84 SS G_CDS: -6.80 Total: -107.64 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -0.05 Total: -26.75 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: -8.57 SS G_CDS: -1.16 Total: -9.73 kcal Total: -83.41 0.92 -82.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674633699.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.227 kcal (2) G-P(sol) polarization free energy of solvation -83.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds