Wall clock time and date at job start Tue Mar 31 2020 23:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38554 * 120.01549 * 2 1 4 4 C 1.40075 * 117.81630 * 180.25960 * 3 2 1 5 5 C 1.48137 * 121.14718 * 179.74241 * 4 3 2 6 6 O 1.21506 * 120.00210 * 173.86872 * 5 4 3 7 7 N 1.34783 * 119.99700 * 353.86776 * 5 4 3 8 8 C 1.46498 * 120.00014 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.47392 * 180.02562 * 8 7 5 10 10 H 1.09003 * 109.46632 * 295.00067 * 9 8 7 11 11 N 1.46500 * 109.46955 * 54.99328 * 9 8 7 12 12 C 1.36934 * 120.00028 * 204.99938 * 11 9 8 13 13 H 1.08008 * 119.99788 * 0.02562 * 12 11 9 14 14 C 1.38813 * 120.00414 * 180.02562 * 12 11 9 15 15 N 1.31617 * 119.99564 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00176 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47093 * 90.00071 * 16 14 12 18 18 H 1.48498 * 109.47210 * 209.99716 * 16 14 12 19 19 H 1.48498 * 109.47263 * 330.00293 * 16 14 12 20 20 C 1.50694 * 109.47163 * 174.99700 * 9 8 7 21 21 C 1.38231 * 120.00298 * 279.72431 * 20 9 8 22 22 C 1.38232 * 120.00122 * 179.78875 * 21 20 9 23 23 C 1.38241 * 120.00016 * 0.44287 * 22 21 20 24 24 C 1.38236 * 119.99870 * 359.80798 * 23 22 21 25 25 C 1.38233 * 120.00036 * 359.97438 * 24 23 22 26 26 C 1.39769 * 117.70758 * 359.47454 * 4 3 2 27 27 C 1.50698 * 120.17235 * 180.29645 * 26 4 3 28 28 N 1.31891 * 119.65292 * 0.26553 * 26 4 3 29 29 N 1.28271 * 122.33608 * 0.02562 * 28 26 4 30 30 H 1.08997 * 109.46935 * 270.28224 * 1 2 3 31 31 H 1.08999 * 109.46710 * 30.28320 * 1 2 3 32 32 H 1.09003 * 109.46730 * 150.27710 * 1 2 3 33 33 H 1.08002 * 121.09212 * 0.02562 * 3 2 1 34 34 H 0.97000 * 119.99819 * 359.97438 * 7 5 4 35 35 H 1.09002 * 109.46589 * 300.00249 * 8 7 5 36 36 H 1.09002 * 109.47183 * 59.99151 * 8 7 5 37 37 H 0.97000 * 119.99881 * 25.01047 * 11 9 8 38 38 H 0.97000 * 119.99900 * 180.02562 * 15 14 12 39 39 H 1.08002 * 119.99817 * 0.02562 * 21 20 9 40 40 H 1.08007 * 120.00300 * 180.27199 * 22 21 20 41 41 H 1.07995 * 120.00038 * 179.83345 * 23 22 21 42 42 H 1.07993 * 119.99901 * 179.97438 * 24 23 22 43 43 H 1.07994 * 120.00022 * 179.97438 * 25 24 23 44 44 H 1.08998 * 109.47203 * 83.70695 * 27 26 4 45 45 H 1.08996 * 109.47110 * 203.71252 * 27 26 4 46 46 H 1.09001 * 109.46980 * 323.71191 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2001 1.1997 0.0000 4 6 3.5998 1.1460 -0.0056 5 6 4.4141 2.3835 -0.0117 6 8 5.6225 2.3161 0.0959 7 7 3.8145 3.5841 -0.1366 8 6 4.6197 4.8079 -0.1432 9 6 3.7012 6.0220 -0.2955 10 1 3.2163 5.9906 -1.2712 11 7 2.6825 5.9986 0.7570 12 6 1.4840 6.6323 0.5641 13 1 1.2897 7.1490 -0.3643 14 6 0.5188 6.6107 1.5615 15 7 0.7559 5.9814 2.6929 16 14 -1.1162 7.4746 1.2979 17 1 -2.0832 6.5280 0.6862 18 1 -1.6434 7.9455 2.6038 19 1 -0.9220 8.6368 0.3942 20 6 4.5149 7.2851 -0.1792 21 6 4.8744 7.7635 1.0669 22 6 5.6244 8.9197 1.1734 23 6 6.0072 9.6027 0.0340 24 6 5.6433 9.1271 -1.2119 25 6 4.8971 7.9684 -1.3186 26 6 4.2018 -0.1154 0.0005 27 6 5.7038 -0.2379 0.0017 28 7 3.4483 -1.1980 0.0059 29 7 2.1669 -1.1420 0.0053 30 1 -0.3633 0.0051 1.0276 31 1 -0.3633 0.8874 -0.5182 32 1 -0.3633 -0.8925 -0.5095 33 1 1.6783 2.1453 0.0004 34 1 2.8498 3.6377 -0.2229 35 1 5.1710 4.8850 0.7939 36 1 5.3220 4.7762 -0.9762 37 1 2.8569 5.5344 1.5906 38 1 0.0813 5.9660 3.3898 39 1 4.5725 7.2317 1.9571 40 1 5.9090 9.2911 2.1468 41 1 6.5909 10.5075 0.1173 42 1 5.9420 9.6609 -2.1019 43 1 4.6124 7.5971 -2.2919 44 1 6.0746 -0.1504 1.0229 45 1 5.9896 -1.2071 -0.4069 46 1 6.1334 0.5553 -0.6101 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691783066.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:10 Heat of formation + Delta-G solvation = 55.852771 kcal Electronic energy + Delta-G solvation = -28892.297311 eV Core-core repulsion = 24975.525587 eV Total energy + Delta-G solvation = -3916.771724 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.38063 -39.52009 -38.81823 -36.14729 -34.62632 -33.88622 -33.43359 -32.10674 -30.49053 -29.98301 -29.65421 -27.64883 -26.85348 -25.11877 -23.88241 -23.07209 -22.41451 -21.99196 -20.55975 -20.05295 -17.89485 -17.70352 -17.26698 -16.44314 -15.83143 -15.71146 -15.58855 -15.25947 -14.84612 -14.58749 -14.51305 -14.22835 -13.66282 -13.59702 -13.36079 -13.31012 -13.04751 -12.94137 -12.90017 -12.66428 -12.48847 -12.39274 -12.10433 -12.06617 -11.25315 -11.06826 -11.04424 -10.94368 -10.79898 -10.55305 -10.34324 -10.26702 -10.24268 -9.91396 -9.55266 -9.45512 -9.19163 -8.90590 -8.48371 -8.27744 -7.25967 -5.98117 -3.30306 0.28268 0.77708 1.77902 1.85236 2.77366 3.11603 3.29286 3.37664 3.38003 3.52918 3.85529 4.19783 4.22477 4.32559 4.40397 4.58556 4.73686 5.01777 5.13144 5.20286 5.26447 5.31522 5.35639 5.43533 5.43879 5.46522 5.51134 5.64516 5.66412 5.69379 5.70682 5.73410 5.94606 5.96542 6.00041 6.08540 6.12530 6.25851 6.31851 6.39723 6.53752 6.57170 6.85749 6.94130 7.19024 7.44767 7.53232 7.56902 8.16875 8.18886 8.60510 9.30982 9.79442 10.16166 11.22917 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008804 B = 0.003820 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3179.687957 B = 7327.211669 C = 9924.713771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.059 3.941 3 C -0.075 4.075 4 C -0.127 4.127 5 C 0.559 3.441 6 O -0.529 6.529 7 N -0.701 5.701 8 C 0.120 3.880 9 C 0.197 3.803 10 H 0.067 0.933 11 N -0.715 5.715 12 C -0.246 4.246 13 H 0.072 0.928 14 C -0.003 4.003 15 N -0.927 5.927 16 Si 0.905 3.095 17 H -0.289 1.289 18 H -0.291 1.291 19 H -0.281 1.281 20 C -0.083 4.083 21 C -0.083 4.083 22 C -0.128 4.128 23 C -0.133 4.133 24 C -0.130 4.130 25 C -0.120 4.120 26 C 0.114 3.886 27 C -0.103 4.103 28 N -0.247 5.247 29 N -0.229 5.229 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.161 0.839 34 H 0.410 0.590 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.387 0.613 38 H 0.257 0.743 39 H 0.123 0.877 40 H 0.114 0.886 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.115 0.885 44 H 0.086 0.914 45 H 0.072 0.928 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.076 -4.515 -6.952 10.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.085 4.085 3 C -0.104 4.104 4 C -0.142 4.142 5 C 0.344 3.656 6 O -0.408 6.408 7 N -0.353 5.353 8 C -0.004 4.004 9 C 0.086 3.914 10 H 0.084 0.916 11 N -0.356 5.356 12 C -0.377 4.377 13 H 0.090 0.910 14 C -0.200 4.200 15 N -0.575 5.575 16 Si 0.736 3.264 17 H -0.216 1.216 18 H -0.217 1.217 19 H -0.207 1.207 20 C -0.086 4.086 21 C -0.101 4.101 22 C -0.146 4.146 23 C -0.151 4.151 24 C -0.148 4.148 25 C -0.138 4.138 26 C -0.031 4.031 27 C -0.161 4.161 28 N -0.089 5.089 29 N -0.072 5.072 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.178 0.822 34 H 0.248 0.752 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.221 0.779 38 H 0.067 0.933 39 H 0.141 0.859 40 H 0.132 0.868 41 H 0.130 0.870 42 H 0.130 0.870 43 H 0.133 0.867 44 H 0.105 0.895 45 H 0.091 0.909 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 6.687 -6.113 -6.903 11.390 hybrid contribution -1.463 2.299 0.346 2.747 sum 5.224 -3.814 -6.558 9.211 Atomic orbital electron populations 1.20713 0.86885 1.04239 1.04082 1.22867 0.99378 0.89848 0.96442 1.22716 0.93418 1.00926 0.93378 1.21133 0.94350 0.95722 1.02959 1.17831 0.87201 0.82947 0.77604 1.90722 1.13532 1.86614 1.49899 1.45878 1.12079 1.05144 1.72153 1.21687 0.93513 0.82729 1.02460 1.19487 0.88506 0.88513 0.94851 0.91560 1.42476 1.12978 1.63989 1.16121 1.19180 0.90939 1.27144 1.00447 0.91041 1.24719 0.98634 1.00576 0.96108 1.69649 1.34876 1.46814 1.06113 0.86236 0.83924 0.79317 0.76961 1.21584 1.21735 1.20709 1.20926 0.96167 0.98653 0.92891 1.21001 0.95513 0.95692 0.97907 1.21116 0.99274 0.96133 0.98050 1.20997 1.01334 0.99881 0.92914 1.20989 0.99760 0.96948 0.97098 1.21009 0.98975 0.95825 0.98040 1.23089 0.99613 0.88561 0.91793 1.20940 0.86540 1.03996 1.04590 1.73017 0.98992 1.26359 1.10527 1.72769 1.01811 1.25041 1.07544 0.89517 0.89762 0.89932 0.82178 0.75194 0.91087 0.90999 0.77868 0.93289 0.85905 0.86824 0.87046 0.86956 0.86740 0.89546 0.90873 0.87774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.97 10.19 36.01 0.37 -0.60 16 2 C 0.06 0.76 6.86 -82.45 -0.57 0.19 16 3 C -0.07 -0.96 9.34 -38.78 -0.36 -1.33 16 4 C -0.13 -1.81 5.92 -104.57 -0.62 -2.43 16 5 C 0.56 8.44 7.74 -12.19 -0.09 8.35 16 6 O -0.53 -8.86 13.52 5.36 0.07 -8.79 16 7 N -0.70 -10.23 5.35 -61.16 -0.33 -10.55 16 8 C 0.12 1.81 5.21 -4.04 -0.02 1.79 16 9 C 0.20 3.31 2.65 -69.09 -0.18 3.12 16 10 H 0.07 1.10 7.94 -51.93 -0.41 0.68 16 11 N -0.71 -14.82 3.79 -54.55 -0.21 -15.02 16 12 C -0.25 -5.91 9.92 -15.06 -0.15 -6.06 16 13 H 0.07 1.72 7.83 -52.48 -0.41 1.30 16 14 C 0.00 -0.09 5.50 -17.43 -0.10 -0.18 16 15 N -0.93 -25.02 13.06 55.49 0.72 -24.30 16 16 Si 0.90 20.56 29.55 -169.99 -5.02 15.53 16 17 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 C -0.08 -1.38 4.92 -104.62 -0.52 -1.90 16 21 C -0.08 -1.43 9.33 -39.59 -0.37 -1.80 16 22 C -0.13 -1.96 10.05 -39.58 -0.40 -2.36 16 23 C -0.13 -1.86 10.05 -39.58 -0.40 -2.26 16 24 C -0.13 -1.80 10.05 -39.58 -0.40 -2.20 16 25 C -0.12 -1.79 9.67 -39.58 -0.38 -2.17 16 26 C 0.11 1.64 6.91 -82.00 -0.57 1.08 16 27 C -0.10 -1.27 8.98 36.00 0.32 -0.95 16 28 N -0.25 -3.81 11.42 33.81 0.39 -3.42 16 29 N -0.23 -3.41 11.40 33.58 0.38 -3.03 16 30 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.08 0.70 8.09 -51.93 -0.42 0.28 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.16 1.85 6.66 -52.49 -0.35 1.50 16 34 H 0.41 5.91 6.37 -40.82 -0.26 5.65 16 35 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.39 8.74 7.80 -40.82 -0.32 8.42 16 38 H 0.26 6.86 8.31 -40.82 -0.34 6.53 16 39 H 0.12 2.28 7.71 -52.49 -0.40 1.88 16 40 H 0.11 1.53 8.06 -52.48 -0.42 1.10 16 41 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 42 H 0.11 1.27 8.06 -52.49 -0.42 0.84 16 43 H 0.11 1.49 8.04 -52.49 -0.42 1.06 16 44 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 45 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 46 H 0.10 1.35 5.93 -51.93 -0.31 1.05 16 LS Contribution 390.38 15.07 5.88 5.88 Total: -1.00 -28.98 390.38 -8.78 -37.76 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: -6.24 Total: 15.64 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: -4.43 Total: -9.70 kcal Atomic # 7 Polarization: -57.28 SS G_CDS: 0.96 Total: -56.32 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: 0.07 Total: -8.79 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -28.98 -8.78 -37.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691783066.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.609 kcal (2) G-P(sol) polarization free energy of solvation -28.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds