Wall clock time and date at job start Tue Mar 31 2020 23:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38554 * 120.01549 * 2 1 4 4 C 1.40075 * 117.81630 * 180.25960 * 3 2 1 5 5 C 1.48137 * 121.14718 * 179.74241 * 4 3 2 6 6 O 1.21506 * 120.00210 * 173.86872 * 5 4 3 7 7 N 1.34783 * 119.99700 * 353.86776 * 5 4 3 8 8 C 1.46498 * 120.00014 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.47392 * 180.02562 * 8 7 5 10 10 H 1.09003 * 109.46632 * 295.00067 * 9 8 7 11 11 N 1.46500 * 109.46955 * 54.99328 * 9 8 7 12 12 C 1.36934 * 120.00028 * 204.99938 * 11 9 8 13 13 H 1.08008 * 119.99788 * 0.02562 * 12 11 9 14 14 C 1.38813 * 120.00414 * 180.02562 * 12 11 9 15 15 N 1.31617 * 119.99564 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00176 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47093 * 90.00071 * 16 14 12 18 18 H 1.48498 * 109.47210 * 209.99716 * 16 14 12 19 19 H 1.48498 * 109.47263 * 330.00293 * 16 14 12 20 20 C 1.50694 * 109.47163 * 174.99700 * 9 8 7 21 21 C 1.38231 * 120.00298 * 279.72431 * 20 9 8 22 22 C 1.38232 * 120.00122 * 179.78875 * 21 20 9 23 23 C 1.38241 * 120.00016 * 0.44287 * 22 21 20 24 24 C 1.38236 * 119.99870 * 359.80798 * 23 22 21 25 25 C 1.38233 * 120.00036 * 359.97438 * 24 23 22 26 26 C 1.39769 * 117.70758 * 359.47454 * 4 3 2 27 27 C 1.50698 * 120.17235 * 180.29645 * 26 4 3 28 28 N 1.31891 * 119.65292 * 0.26553 * 26 4 3 29 29 N 1.28271 * 122.33608 * 0.02562 * 28 26 4 30 30 H 1.08997 * 109.46935 * 270.28224 * 1 2 3 31 31 H 1.08999 * 109.46710 * 30.28320 * 1 2 3 32 32 H 1.09003 * 109.46730 * 150.27710 * 1 2 3 33 33 H 1.08002 * 121.09212 * 0.02562 * 3 2 1 34 34 H 0.97000 * 119.99819 * 359.97438 * 7 5 4 35 35 H 1.09002 * 109.46589 * 300.00249 * 8 7 5 36 36 H 1.09002 * 109.47183 * 59.99151 * 8 7 5 37 37 H 0.97000 * 119.99881 * 25.01047 * 11 9 8 38 38 H 0.97000 * 119.99900 * 180.02562 * 15 14 12 39 39 H 1.08002 * 119.99817 * 0.02562 * 21 20 9 40 40 H 1.08007 * 120.00300 * 180.27199 * 22 21 20 41 41 H 1.07995 * 120.00038 * 179.83345 * 23 22 21 42 42 H 1.07993 * 119.99901 * 179.97438 * 24 23 22 43 43 H 1.07994 * 120.00022 * 179.97438 * 25 24 23 44 44 H 1.08998 * 109.47203 * 83.70695 * 27 26 4 45 45 H 1.08996 * 109.47110 * 203.71252 * 27 26 4 46 46 H 1.09001 * 109.46980 * 323.71191 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2001 1.1997 0.0000 4 6 3.5998 1.1460 -0.0056 5 6 4.4141 2.3835 -0.0117 6 8 5.6225 2.3161 0.0959 7 7 3.8145 3.5841 -0.1366 8 6 4.6197 4.8079 -0.1432 9 6 3.7012 6.0220 -0.2955 10 1 3.2163 5.9906 -1.2712 11 7 2.6825 5.9986 0.7570 12 6 1.4840 6.6323 0.5641 13 1 1.2897 7.1490 -0.3643 14 6 0.5188 6.6107 1.5615 15 7 0.7559 5.9814 2.6929 16 14 -1.1162 7.4746 1.2979 17 1 -2.0832 6.5280 0.6862 18 1 -1.6434 7.9455 2.6038 19 1 -0.9220 8.6368 0.3942 20 6 4.5149 7.2851 -0.1792 21 6 4.8744 7.7635 1.0669 22 6 5.6244 8.9197 1.1734 23 6 6.0072 9.6027 0.0340 24 6 5.6433 9.1271 -1.2119 25 6 4.8971 7.9684 -1.3186 26 6 4.2018 -0.1154 0.0005 27 6 5.7038 -0.2379 0.0017 28 7 3.4483 -1.1980 0.0059 29 7 2.1669 -1.1420 0.0053 30 1 -0.3633 0.0051 1.0276 31 1 -0.3633 0.8874 -0.5182 32 1 -0.3633 -0.8925 -0.5095 33 1 1.6783 2.1453 0.0004 34 1 2.8498 3.6377 -0.2229 35 1 5.1710 4.8850 0.7939 36 1 5.3220 4.7762 -0.9762 37 1 2.8569 5.5344 1.5906 38 1 0.0813 5.9660 3.3898 39 1 4.5725 7.2317 1.9571 40 1 5.9090 9.2911 2.1468 41 1 6.5909 10.5075 0.1173 42 1 5.9420 9.6609 -2.1019 43 1 4.6124 7.5971 -2.2919 44 1 6.0746 -0.1504 1.0229 45 1 5.9896 -1.2071 -0.4069 46 1 6.1334 0.5553 -0.6101 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691783066.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:09 Heat of formation + Delta-G solvation = 39.369485 kcal Electronic energy + Delta-G solvation = -28893.012080 eV Core-core repulsion = 24975.525587 eV Total energy + Delta-G solvation = -3917.486493 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.48145 -40.74766 -40.02450 -37.49719 -35.77353 -35.17242 -34.68722 -33.60159 -31.68710 -31.17137 -30.96479 -28.95481 -27.86012 -26.31677 -25.47880 -24.34366 -23.53484 -23.17822 -21.77436 -21.32024 -19.40120 -18.83466 -18.68564 -17.67346 -17.04579 -16.78154 -16.77486 -16.68085 -16.13266 -15.82698 -15.73169 -15.65855 -15.11359 -14.82745 -14.47016 -14.38391 -14.27182 -14.17067 -14.04664 -13.81732 -13.49337 -13.40189 -13.32658 -13.03106 -12.87723 -12.80170 -12.43137 -12.17541 -12.11839 -11.97739 -11.83687 -11.61696 -11.50970 -11.38008 -10.99307 -10.61996 -10.56228 -10.13785 -9.66333 -9.51897 -9.02252 -7.91026 -5.20280 -0.83014 -0.27582 0.59609 0.66382 1.49490 1.53210 1.58564 1.59531 1.91932 2.42166 2.57533 2.84100 3.02821 3.15104 3.26723 3.42915 3.52669 3.65281 3.80770 4.03955 4.05219 4.17470 4.22046 4.23740 4.35483 4.37823 4.42446 4.45087 4.68272 4.71008 4.72717 4.75393 4.80635 4.81222 4.83605 5.03120 5.07213 5.15794 5.23608 5.28630 5.32180 5.38780 5.57896 5.70941 5.75064 5.94815 6.26425 6.29624 6.35650 6.97061 7.37908 7.51360 8.04419 8.31238 9.30591 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008804 B = 0.003820 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3179.687957 B = 7327.211669 C = 9924.713771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.060 3.940 3 C -0.069 4.069 4 C -0.137 4.137 5 C 0.562 3.438 6 O -0.548 6.548 7 N -0.697 5.697 8 C 0.131 3.869 9 C 0.203 3.797 10 H 0.075 0.925 11 N -0.718 5.718 12 C -0.229 4.229 13 H 0.074 0.926 14 C -0.058 4.058 15 N -0.961 5.961 16 Si 0.957 3.043 17 H -0.283 1.283 18 H -0.306 1.306 19 H -0.278 1.278 20 C -0.100 4.100 21 C -0.109 4.109 22 C -0.138 4.138 23 C -0.132 4.132 24 C -0.127 4.127 25 C -0.125 4.125 26 C 0.106 3.894 27 C -0.097 4.097 28 N -0.266 5.266 29 N -0.248 5.248 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.174 0.826 34 H 0.412 0.588 35 H 0.056 0.944 36 H 0.087 0.913 37 H 0.375 0.625 38 H 0.249 0.751 39 H 0.097 0.903 40 H 0.126 0.874 41 H 0.142 0.858 42 H 0.145 0.855 43 H 0.136 0.864 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.215 -3.335 -8.885 11.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.085 4.085 3 C -0.099 4.099 4 C -0.151 4.151 5 C 0.347 3.653 6 O -0.427 6.427 7 N -0.348 5.348 8 C 0.007 3.993 9 C 0.093 3.907 10 H 0.093 0.907 11 N -0.358 5.358 12 C -0.360 4.360 13 H 0.092 0.908 14 C -0.251 4.251 15 N -0.611 5.611 16 Si 0.788 3.212 17 H -0.210 1.210 18 H -0.233 1.233 19 H -0.204 1.204 20 C -0.103 4.103 21 C -0.127 4.127 22 C -0.156 4.156 23 C -0.149 4.149 24 C -0.145 4.145 25 C -0.144 4.144 26 C -0.039 4.039 27 C -0.155 4.155 28 N -0.107 5.107 29 N -0.091 5.091 30 H 0.112 0.888 31 H 0.119 0.881 32 H 0.111 0.889 33 H 0.191 0.809 34 H 0.250 0.750 35 H 0.074 0.926 36 H 0.105 0.895 37 H 0.208 0.792 38 H 0.058 0.942 39 H 0.115 0.885 40 H 0.144 0.856 41 H 0.160 0.840 42 H 0.163 0.837 43 H 0.153 0.847 44 H 0.105 0.895 45 H 0.106 0.894 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.844 -4.932 -8.887 12.253 hybrid contribution -1.418 2.001 0.885 2.607 sum 5.427 -2.931 -8.002 10.103 Atomic orbital electron populations 1.20847 0.84486 1.05582 1.04889 1.23346 1.00870 0.89134 0.95130 1.22915 0.92976 1.01638 0.92358 1.21106 0.94912 0.95246 1.03883 1.17929 0.87027 0.83204 0.77100 1.90713 1.14322 1.86884 1.50791 1.45816 1.12078 1.04947 1.71951 1.21551 0.93246 0.82211 1.02287 1.19568 0.87941 0.89436 0.93705 0.90742 1.42494 1.13142 1.63565 1.16563 1.19425 0.91523 1.25265 0.99805 0.90798 1.25273 1.01288 1.02214 0.96326 1.69781 1.35368 1.49066 1.06884 0.85393 0.81307 0.78549 0.75959 1.20977 1.23297 1.20361 1.20842 0.97272 0.98738 0.93479 1.20950 0.97398 0.96993 0.97396 1.21341 0.99021 0.95671 0.99579 1.21382 1.00720 1.00464 0.92384 1.21409 0.98443 0.96362 0.98304 1.21288 0.98843 0.96075 0.98178 1.23337 1.00390 0.88470 0.91698 1.20917 0.85419 1.04597 1.04572 1.72970 0.99447 1.26899 1.11383 1.72715 1.01827 1.26170 1.08382 0.88805 0.88119 0.88911 0.80866 0.74987 0.92573 0.89464 0.79174 0.94233 0.88505 0.85612 0.84048 0.83703 0.84660 0.89477 0.89364 0.88381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.74 10.19 71.24 0.73 -1.02 16 2 C 0.06 1.49 6.86 42.63 0.29 1.78 16 3 C -0.07 -1.73 9.34 22.79 0.21 -1.52 16 4 C -0.14 -3.87 5.92 -19.83 -0.12 -3.99 16 5 C 0.56 16.86 7.74 86.87 0.67 17.54 16 6 O -0.55 -18.32 13.52 -3.74 -0.05 -18.37 16 7 N -0.70 -20.06 5.35 -465.70 -2.49 -22.55 16 8 C 0.13 3.90 5.21 86.38 0.45 4.35 16 9 C 0.20 6.66 2.65 44.24 0.12 6.77 16 10 H 0.07 2.33 7.94 -2.39 -0.02 2.32 16 11 N -0.72 -29.86 3.79 -326.50 -1.24 -31.10 16 12 C -0.23 -10.86 9.92 84.03 0.83 -10.02 16 13 H 0.07 3.44 7.83 -2.91 -0.02 3.42 16 14 C -0.06 -2.94 5.50 84.86 0.47 -2.48 16 15 N -0.96 -52.77 13.06 21.65 0.28 -52.48 16 16 Si 0.96 42.21 29.55 68.60 2.03 44.24 16 17 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 18 H -0.31 -14.10 7.11 99.48 0.71 -13.40 16 19 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 20 C -0.10 -3.25 4.92 -19.87 -0.10 -3.35 16 21 C -0.11 -3.79 9.33 22.27 0.21 -3.58 16 22 C -0.14 -4.09 10.05 22.27 0.22 -3.87 16 23 C -0.13 -3.29 10.05 22.27 0.22 -3.07 16 24 C -0.13 -3.08 10.05 22.27 0.22 -2.85 16 25 C -0.13 -3.42 9.67 22.27 0.22 -3.21 16 26 C 0.11 3.05 6.91 42.92 0.30 3.35 16 27 C -0.10 -2.39 8.98 71.24 0.64 -1.75 16 28 N -0.27 -8.15 11.42 -46.94 -0.54 -8.69 16 29 N -0.25 -7.32 11.40 -47.68 -0.54 -7.86 16 30 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.10 1.43 8.09 -2.39 -0.02 1.41 16 32 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.17 3.81 6.66 -2.91 -0.02 3.79 16 34 H 0.41 11.63 6.37 -92.71 -0.59 11.04 16 35 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.38 17.38 7.80 -92.71 -0.72 16.65 16 38 H 0.25 13.59 8.31 -92.71 -0.77 12.82 16 39 H 0.10 3.79 7.71 -2.91 -0.02 3.77 16 40 H 0.13 3.28 8.06 -2.91 -0.02 3.26 16 41 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 42 H 0.15 2.56 8.06 -2.91 -0.02 2.53 16 43 H 0.14 3.06 8.04 -2.91 -0.02 3.03 16 44 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 45 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.10 2.55 5.93 -2.39 -0.01 2.53 16 Total: -1.00 -62.21 390.38 2.75 -59.46 By element: Atomic # 1 Polarization: 44.56 SS G_CDS: -0.29 Total: 44.27 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: 5.59 Total: -6.91 kcal Atomic # 7 Polarization: -118.16 SS G_CDS: -4.53 Total: -122.69 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.05 Total: -18.37 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -62.21 2.75 -59.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691783066.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.834 kcal (2) G-P(sol) polarization free energy of solvation -62.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds