Wall clock time and date at job start Tue Mar 31 2020 23:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32160 * 120.54200 * 2 1 4 4 C 1.31849 * 120.97212 * 179.97438 * 3 2 1 5 5 N 1.31886 * 122.09448 * 359.97438 * 4 3 2 6 6 C 1.32135 * 120.96830 * 0.02562 * 5 4 3 7 7 C 1.39933 * 120.53644 * 179.97438 * 2 1 3 8 8 C 1.47831 * 120.93794 * 0.03848 * 7 2 1 9 9 O 1.21552 * 120.00475 * 54.96286 * 8 7 2 10 10 N 1.34787 * 119.99906 * 234.96346 * 8 7 2 11 11 C 1.46493 * 119.99782 * 5.54620 * 10 8 7 12 12 C 1.53001 * 109.47267 * 90.00415 * 11 10 8 13 13 N 1.46501 * 109.47291 * 179.97438 * 12 11 10 14 14 C 1.36939 * 120.00110 * 179.97438 * 13 12 11 15 15 H 1.08006 * 119.99751 * 0.02562 * 14 13 12 16 16 C 1.38805 * 120.00247 * 179.97438 * 14 13 12 17 17 N 1.31621 * 119.99668 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00271 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47040 * 59.99986 * 18 16 14 20 20 H 1.48497 * 109.47211 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.46861 * 300.00315 * 18 16 14 22 22 C 1.46498 * 119.99763 * 185.54747 * 10 8 7 23 23 C 1.50697 * 109.47142 * 85.09724 * 22 10 8 24 24 C 1.38235 * 119.99638 * 274.66319 * 23 22 10 25 25 C 1.38247 * 119.99634 * 179.76892 * 24 23 22 26 26 C 1.38235 * 119.99866 * 0.48345 * 25 24 23 27 27 C 1.38242 * 119.99956 * 359.79077 * 26 25 24 28 28 C 1.38233 * 120.00150 * 359.95471 * 27 26 25 29 29 H 1.09000 * 109.47393 * 95.02878 * 1 2 3 30 30 H 1.09003 * 109.47546 * 215.02955 * 1 2 3 31 31 H 1.09002 * 109.47030 * 335.02860 * 1 2 3 32 32 H 1.08001 * 118.95376 * 179.97438 * 4 3 2 33 33 H 1.07993 * 120.53780 * 180.02562 * 6 5 4 34 34 H 1.09001 * 109.47238 * 209.99926 * 11 10 8 35 35 H 1.08998 * 109.47649 * 330.00318 * 11 10 8 36 36 H 1.09006 * 109.46547 * 299.99425 * 12 11 10 37 37 H 1.08993 * 109.47531 * 59.99229 * 12 11 10 38 38 H 0.96992 * 119.99920 * 0.02562 * 13 12 11 39 39 H 0.97008 * 119.99622 * 179.97438 * 17 16 14 40 40 H 1.09000 * 109.46936 * 205.10044 * 22 10 8 41 41 H 1.09001 * 109.46959 * 325.09494 * 22 10 8 42 42 H 1.07994 * 120.00533 * 359.97438 * 24 23 22 43 43 H 1.07991 * 119.99633 * 180.25464 * 25 24 23 44 44 H 1.07993 * 119.99856 * 179.76971 * 26 25 24 45 45 H 1.07997 * 119.99713 * 179.97438 * 27 26 25 46 46 H 1.07997 * 120.00184 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1786 1.1382 0.0000 4 6 3.4970 1.1481 0.0005 5 7 4.2061 0.0361 0.0015 6 6 3.6164 -1.1463 0.0016 7 6 2.2180 -1.2053 0.0005 8 6 1.5120 -2.5041 0.0003 9 8 0.6912 -2.7497 -0.8620 10 7 1.7784 -3.4161 0.9563 11 6 2.6753 -3.0760 2.0635 12 6 1.8615 -2.4831 3.2155 13 7 2.7584 -2.1435 4.3230 14 6 2.2518 -1.5941 5.4705 15 1 1.1910 -1.4116 5.5592 16 6 3.1015 -1.2728 6.5200 17 7 4.3942 -1.4958 6.4120 18 14 2.4104 -0.5241 8.0856 19 1 1.4302 -1.4607 8.6915 20 1 3.5161 -0.2749 9.0451 21 1 1.7356 0.7593 7.7645 22 6 1.1710 -4.7475 0.8881 23 6 2.0111 -5.6385 0.0098 24 6 1.8228 -5.6350 -1.3597 25 6 2.5968 -6.4488 -2.1658 26 6 3.5520 -7.2734 -1.6015 27 6 3.7363 -7.2811 -0.2315 28 6 2.9660 -6.4634 0.5742 29 1 -0.3634 -0.0901 -1.0237 30 1 -0.3634 -0.8415 0.5899 31 1 -0.3633 0.9316 0.4339 32 1 4.0127 2.0970 0.0001 33 1 4.2038 -2.0525 0.0029 34 1 3.1875 -3.9753 2.4056 35 1 3.4104 -2.3460 1.7246 36 1 1.3494 -1.5837 2.8733 37 1 1.1264 -3.2130 3.5544 38 1 3.7110 -2.3071 4.2431 39 1 4.9880 -1.2709 7.1454 40 1 1.1152 -5.1731 1.8900 41 1 0.1672 -4.6680 0.4707 42 1 1.0735 -4.9941 -1.8002 43 1 2.4525 -6.4430 -3.2360 44 1 4.1540 -7.9119 -2.2309 45 1 4.4823 -7.9256 0.2094 46 1 3.1097 -6.4697 1.6445 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699980606.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:15 Heat of formation + Delta-G solvation = 59.231148 kcal Electronic energy + Delta-G solvation = -29532.408857 eV Core-core repulsion = 25615.783630 eV Total energy + Delta-G solvation = -3916.625227 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.41464 -39.94388 -38.81507 -36.38929 -34.55968 -34.32966 -33.08866 -31.89897 -31.02460 -30.94967 -28.84975 -27.94388 -26.57345 -24.88799 -23.77829 -23.06145 -22.62931 -21.74882 -21.63550 -19.66282 -18.02237 -17.59701 -17.08029 -16.88896 -16.65030 -16.45897 -15.52019 -15.11953 -14.98728 -14.90053 -14.41251 -14.11505 -14.00378 -13.72083 -13.50727 -13.35381 -13.24104 -13.05913 -13.02524 -12.96365 -12.63700 -12.36371 -12.02022 -11.70647 -11.62386 -11.33362 -11.22372 -11.05141 -10.95894 -10.82808 -10.52901 -10.21268 -10.01708 -9.82953 -9.52399 -9.34508 -9.00666 -8.97554 -8.91580 -8.69785 -7.05427 -5.84881 -3.15527 0.54351 0.98635 1.17245 1.31953 2.49613 2.89358 3.39593 3.44358 3.45091 3.67026 3.76864 3.95630 4.06656 4.28197 4.29112 4.55602 4.68812 4.75418 4.88911 4.91124 5.05095 5.11312 5.14486 5.25141 5.34691 5.39055 5.46954 5.50948 5.51995 5.56606 5.64671 5.69185 5.74843 5.88451 5.89299 5.94761 5.99986 6.25213 6.29227 6.36144 6.41535 6.49549 6.54051 6.64431 6.83953 6.90194 7.25242 7.61620 7.97195 7.99234 8.32549 9.44175 9.97077 10.32033 11.37426 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008531 B = 0.003978 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3281.313831 B = 7036.661812 C = 9036.289424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.225 3.775 3 N -0.521 5.521 4 C 0.315 3.685 5 N -0.521 5.521 6 C 0.188 3.812 7 C -0.233 4.233 8 C 0.579 3.421 9 O -0.529 6.529 10 N -0.592 5.592 11 C 0.092 3.908 12 C 0.142 3.858 13 N -0.729 5.729 14 C -0.244 4.244 15 H 0.070 0.930 16 C -0.009 4.009 17 N -0.931 5.931 18 Si 0.908 3.092 19 H -0.285 1.285 20 H -0.290 1.290 21 H -0.285 1.285 22 C 0.155 3.845 23 C -0.107 4.107 24 C -0.097 4.097 25 C -0.127 4.127 26 C -0.119 4.119 27 C -0.125 4.125 28 C -0.103 4.103 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.200 0.800 33 H 0.171 0.829 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.017 0.983 37 H 0.025 0.975 38 H 0.384 0.616 39 H 0.257 0.743 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.129 0.871 43 H 0.119 0.881 44 H 0.119 0.881 45 H 0.121 0.879 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.284 -6.897 -17.407 19.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.079 3.921 3 N -0.235 5.235 4 C 0.028 3.972 5 N -0.234 5.234 6 C 0.021 3.979 7 C -0.241 4.241 8 C 0.366 3.634 9 O -0.406 6.406 10 N -0.323 5.323 11 C -0.031 4.031 12 C 0.014 3.986 13 N -0.374 5.374 14 C -0.375 4.375 15 H 0.088 0.912 16 C -0.205 4.205 17 N -0.579 5.579 18 Si 0.738 3.262 19 H -0.211 1.211 20 H -0.216 1.216 21 H -0.212 1.212 22 C 0.033 3.967 23 C -0.108 4.108 24 C -0.116 4.116 25 C -0.145 4.145 26 C -0.137 4.137 27 C -0.143 4.143 28 C -0.122 4.122 29 H 0.111 0.889 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.217 0.783 33 H 0.188 0.812 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.034 0.966 37 H 0.043 0.957 38 H 0.218 0.782 39 H 0.067 0.933 40 H 0.112 0.888 41 H 0.111 0.889 42 H 0.147 0.853 43 H 0.137 0.863 44 H 0.137 0.863 45 H 0.139 0.861 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.361 -6.070 -17.712 19.023 hybrid contribution -0.109 -0.416 1.044 1.129 sum -3.470 -6.486 -16.668 18.219 Atomic orbital electron populations 1.20835 0.87234 1.04259 1.04085 1.21757 0.97684 0.86615 0.86067 1.68333 1.10377 1.29500 1.15307 1.25141 0.86673 0.97253 0.88089 1.68445 1.41287 0.98865 1.14824 1.23334 0.90447 0.96726 0.87388 1.21491 0.96657 0.95971 1.09931 1.17810 0.81525 0.82775 0.81336 1.90744 1.33506 1.78889 1.37449 1.47853 1.47917 1.12290 1.24288 1.22093 0.92498 1.01739 0.86744 1.20933 0.93363 0.96607 0.87733 1.42177 1.06218 1.75723 1.13269 1.19117 0.92727 1.33663 0.92000 0.91246 1.24736 0.95414 1.01797 0.98564 1.69645 1.01993 1.53469 1.32788 0.86263 0.77649 0.79153 0.83094 1.21145 1.21555 1.21183 1.20415 0.96096 0.80352 0.99858 1.20241 0.98158 0.97844 0.94526 1.21281 0.99239 0.97937 0.93125 1.21166 0.96554 0.97010 0.99752 1.21172 0.98247 0.99082 0.95182 1.21143 0.99759 0.99543 0.93816 1.21159 0.95097 0.95780 1.00125 0.88917 0.90031 0.89610 0.78317 0.81241 0.89529 0.90228 0.96555 0.95736 0.78235 0.93321 0.88786 0.88859 0.85262 0.86289 0.86341 0.86064 0.85767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 9.30 36.00 0.33 -0.99 16 2 C 0.23 3.29 6.86 -81.82 -0.56 2.73 16 3 N -0.52 -7.67 10.36 -10.48 -0.11 -7.78 16 4 C 0.32 4.31 12.27 -92.03 -1.13 3.18 16 5 N -0.52 -7.61 10.42 -14.24 -0.15 -7.76 16 6 C 0.19 2.63 8.87 -16.77 -0.15 2.49 16 7 C -0.23 -3.38 4.95 -104.69 -0.52 -3.90 16 8 C 0.58 8.26 6.16 -12.33 -0.08 8.18 16 9 O -0.53 -8.14 14.77 5.32 0.08 -8.07 16 10 N -0.59 -7.83 2.47 -176.19 -0.43 -8.26 16 11 C 0.09 1.36 5.33 -4.05 -0.02 1.34 16 12 C 0.14 2.71 6.58 -4.04 -0.03 2.68 16 13 N -0.73 -17.68 5.60 -59.91 -0.34 -18.01 16 14 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 15 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 16 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 17 N -0.93 -27.46 13.06 55.49 0.72 -26.74 16 18 Si 0.91 22.08 29.55 -169.99 -5.02 17.05 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 C 0.15 1.79 5.53 -5.20 -0.03 1.76 16 23 C -0.11 -1.21 5.42 -104.62 -0.57 -1.78 16 24 C -0.10 -1.12 9.54 -39.58 -0.38 -1.50 16 25 C -0.13 -1.30 10.05 -39.58 -0.40 -1.69 16 26 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 27 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 28 C -0.10 -1.10 9.68 -39.58 -0.38 -1.48 16 29 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.08 1.04 7.29 -51.93 -0.38 0.66 16 31 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.20 1.99 8.06 -52.49 -0.42 1.57 16 33 H 0.17 2.05 7.51 -52.49 -0.39 1.65 16 34 H 0.09 1.20 8.07 -51.93 -0.42 0.78 16 35 H 0.08 1.21 4.47 -51.93 -0.23 0.98 16 36 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.38 9.72 7.67 -40.82 -0.31 9.41 16 39 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.09 1.00 7.94 -51.93 -0.41 0.58 16 41 H 0.09 1.08 7.47 -51.93 -0.39 0.70 16 42 H 0.13 1.57 7.01 -52.49 -0.37 1.21 16 43 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 44 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 45 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 46 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 LS Contribution 390.12 15.07 5.88 5.88 Total: -1.00 -32.44 390.12 -10.57 -43.00 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -6.26 Total: 9.98 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: -4.94 Total: 0.69 kcal Atomic # 7 Polarization: -68.24 SS G_CDS: -0.30 Total: -68.54 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: 0.08 Total: -8.07 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.44 -10.57 -43.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699980606.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.236 kcal (2) G-P(sol) polarization free energy of solvation -32.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds