Wall clock time and date at job start Tue Mar 31 2020 23:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32160 * 120.54200 * 2 1 4 4 C 1.31849 * 120.97212 * 179.97438 * 3 2 1 5 5 N 1.31886 * 122.09448 * 359.97438 * 4 3 2 6 6 C 1.32135 * 120.96830 * 0.02562 * 5 4 3 7 7 C 1.39933 * 120.53644 * 179.97438 * 2 1 3 8 8 C 1.47831 * 120.93794 * 0.03848 * 7 2 1 9 9 O 1.21552 * 120.00475 * 54.96286 * 8 7 2 10 10 N 1.34787 * 119.99906 * 234.96346 * 8 7 2 11 11 C 1.46493 * 119.99782 * 5.54620 * 10 8 7 12 12 C 1.53001 * 109.47267 * 90.00415 * 11 10 8 13 13 N 1.46501 * 109.47291 * 179.97438 * 12 11 10 14 14 C 1.36939 * 120.00110 * 179.97438 * 13 12 11 15 15 H 1.08006 * 119.99751 * 0.02562 * 14 13 12 16 16 C 1.38805 * 120.00247 * 179.97438 * 14 13 12 17 17 N 1.31621 * 119.99668 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00271 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47040 * 59.99986 * 18 16 14 20 20 H 1.48497 * 109.47211 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.46861 * 300.00315 * 18 16 14 22 22 C 1.46498 * 119.99763 * 185.54747 * 10 8 7 23 23 C 1.50697 * 109.47142 * 85.09724 * 22 10 8 24 24 C 1.38235 * 119.99638 * 274.66319 * 23 22 10 25 25 C 1.38247 * 119.99634 * 179.76892 * 24 23 22 26 26 C 1.38235 * 119.99866 * 0.48345 * 25 24 23 27 27 C 1.38242 * 119.99956 * 359.79077 * 26 25 24 28 28 C 1.38233 * 120.00150 * 359.95471 * 27 26 25 29 29 H 1.09000 * 109.47393 * 95.02878 * 1 2 3 30 30 H 1.09003 * 109.47546 * 215.02955 * 1 2 3 31 31 H 1.09002 * 109.47030 * 335.02860 * 1 2 3 32 32 H 1.08001 * 118.95376 * 179.97438 * 4 3 2 33 33 H 1.07993 * 120.53780 * 180.02562 * 6 5 4 34 34 H 1.09001 * 109.47238 * 209.99926 * 11 10 8 35 35 H 1.08998 * 109.47649 * 330.00318 * 11 10 8 36 36 H 1.09006 * 109.46547 * 299.99425 * 12 11 10 37 37 H 1.08993 * 109.47531 * 59.99229 * 12 11 10 38 38 H 0.96992 * 119.99920 * 0.02562 * 13 12 11 39 39 H 0.97008 * 119.99622 * 179.97438 * 17 16 14 40 40 H 1.09000 * 109.46936 * 205.10044 * 22 10 8 41 41 H 1.09001 * 109.46959 * 325.09494 * 22 10 8 42 42 H 1.07994 * 120.00533 * 359.97438 * 24 23 22 43 43 H 1.07991 * 119.99633 * 180.25464 * 25 24 23 44 44 H 1.07993 * 119.99856 * 179.76971 * 26 25 24 45 45 H 1.07997 * 119.99713 * 179.97438 * 27 26 25 46 46 H 1.07997 * 120.00184 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1786 1.1382 0.0000 4 6 3.4970 1.1481 0.0005 5 7 4.2061 0.0361 0.0015 6 6 3.6164 -1.1463 0.0016 7 6 2.2180 -1.2053 0.0005 8 6 1.5120 -2.5041 0.0003 9 8 0.6912 -2.7497 -0.8620 10 7 1.7784 -3.4161 0.9563 11 6 2.6753 -3.0760 2.0635 12 6 1.8615 -2.4831 3.2155 13 7 2.7584 -2.1435 4.3230 14 6 2.2518 -1.5941 5.4705 15 1 1.1910 -1.4116 5.5592 16 6 3.1015 -1.2728 6.5200 17 7 4.3942 -1.4958 6.4120 18 14 2.4104 -0.5241 8.0856 19 1 1.4302 -1.4607 8.6915 20 1 3.5161 -0.2749 9.0451 21 1 1.7356 0.7593 7.7645 22 6 1.1710 -4.7475 0.8881 23 6 2.0111 -5.6385 0.0098 24 6 1.8228 -5.6350 -1.3597 25 6 2.5968 -6.4488 -2.1658 26 6 3.5520 -7.2734 -1.6015 27 6 3.7363 -7.2811 -0.2315 28 6 2.9660 -6.4634 0.5742 29 1 -0.3634 -0.0901 -1.0237 30 1 -0.3634 -0.8415 0.5899 31 1 -0.3633 0.9316 0.4339 32 1 4.0127 2.0970 0.0001 33 1 4.2038 -2.0525 0.0029 34 1 3.1875 -3.9753 2.4056 35 1 3.4104 -2.3460 1.7246 36 1 1.3494 -1.5837 2.8733 37 1 1.1264 -3.2130 3.5544 38 1 3.7110 -2.3071 4.2431 39 1 4.9880 -1.2709 7.1454 40 1 1.1152 -5.1731 1.8900 41 1 0.1672 -4.6680 0.4707 42 1 1.0735 -4.9941 -1.8002 43 1 2.4525 -6.4430 -3.2360 44 1 4.1540 -7.9119 -2.2309 45 1 4.4823 -7.9256 0.2094 46 1 3.1097 -6.4697 1.6445 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699980606.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:14 Heat of formation + Delta-G solvation = 41.445786 kcal Electronic energy + Delta-G solvation = -29533.180088 eV Core-core repulsion = 25615.783630 eV Total energy + Delta-G solvation = -3917.396458 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.50741 -40.96218 -39.71653 -37.71788 -36.12727 -35.50070 -34.18032 -33.40433 -32.34280 -31.75565 -29.88529 -29.48188 -27.57776 -26.16304 -25.40113 -24.13016 -23.56166 -23.20844 -22.52443 -20.77075 -19.36842 -19.10315 -18.20424 -17.94169 -17.75772 -17.57245 -16.77162 -16.29758 -16.08989 -15.92327 -15.68756 -15.46359 -15.34097 -15.13991 -14.80753 -14.65462 -14.27328 -14.25353 -14.06456 -13.93946 -13.48232 -13.37186 -13.13377 -13.04535 -12.95206 -12.82708 -12.70963 -12.50755 -12.20473 -12.10290 -11.88097 -11.82566 -11.65031 -11.14477 -10.96802 -10.63337 -10.45352 -9.89466 -9.79887 -9.68450 -9.06667 -7.97924 -5.28006 -0.54370 -0.12082 0.35907 0.52413 1.36157 1.47173 1.48946 1.55148 1.81788 2.54203 2.58764 2.92078 2.94672 3.03776 3.19292 3.23507 3.36091 3.78002 3.82803 3.87421 3.95997 4.09208 4.17650 4.18985 4.24129 4.30684 4.32865 4.33818 4.47576 4.55379 4.60034 4.65773 4.73246 4.77765 4.88638 4.90372 5.00097 5.11137 5.18572 5.23277 5.34342 5.46480 5.59092 5.64125 5.68540 5.75374 6.11390 6.12852 6.23639 6.86005 6.89625 7.30876 8.01044 8.25938 9.24495 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008531 B = 0.003978 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3281.313831 B = 7036.661812 C = 9036.289424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.212 3.788 3 N -0.534 5.534 4 C 0.310 3.690 5 N -0.535 5.535 6 C 0.185 3.815 7 C -0.246 4.246 8 C 0.583 3.417 9 O -0.541 6.541 10 N -0.585 5.585 11 C 0.109 3.891 12 C 0.147 3.853 13 N -0.738 5.738 14 C -0.250 4.250 15 H 0.071 0.929 16 C -0.065 4.065 17 N -0.963 5.963 18 Si 0.968 3.032 19 H -0.276 1.276 20 H -0.293 1.293 21 H -0.281 1.281 22 C 0.154 3.846 23 C -0.115 4.115 24 C -0.112 4.112 25 C -0.133 4.133 26 C -0.119 4.119 27 C -0.129 4.129 28 C -0.112 4.112 29 H 0.103 0.897 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.231 0.769 33 H 0.186 0.814 34 H 0.101 0.899 35 H 0.078 0.922 36 H 0.005 0.995 37 H 0.030 0.970 38 H 0.377 0.623 39 H 0.253 0.747 40 H 0.105 0.895 41 H 0.091 0.909 42 H 0.117 0.883 43 H 0.134 0.866 44 H 0.143 0.857 45 H 0.141 0.859 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.291 -7.609 -17.745 19.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.065 3.935 3 N -0.248 5.248 4 C 0.023 3.977 5 N -0.249 5.249 6 C 0.018 3.982 7 C -0.254 4.254 8 C 0.369 3.631 9 O -0.419 6.419 10 N -0.316 5.316 11 C -0.014 4.014 12 C 0.019 3.981 13 N -0.382 5.382 14 C -0.381 4.381 15 H 0.089 0.911 16 C -0.258 4.258 17 N -0.613 5.613 18 Si 0.797 3.203 19 H -0.202 1.202 20 H -0.219 1.219 21 H -0.208 1.208 22 C 0.033 3.967 23 C -0.116 4.116 24 C -0.130 4.130 25 C -0.151 4.151 26 C -0.137 4.137 27 C -0.147 4.147 28 C -0.130 4.130 29 H 0.122 0.878 30 H 0.094 0.906 31 H 0.112 0.888 32 H 0.247 0.753 33 H 0.203 0.797 34 H 0.119 0.881 35 H 0.096 0.904 36 H 0.023 0.977 37 H 0.047 0.953 38 H 0.209 0.791 39 H 0.062 0.938 40 H 0.123 0.877 41 H 0.109 0.891 42 H 0.135 0.865 43 H 0.152 0.848 44 H 0.160 0.840 45 H 0.159 0.841 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.408 -6.801 -18.076 19.612 hybrid contribution -0.136 -0.221 1.062 1.093 sum -3.543 -7.022 -17.014 18.744 Atomic orbital electron populations 1.20851 0.86078 1.04379 1.04696 1.22147 0.98709 0.86807 0.85810 1.68399 1.10904 1.29564 1.15970 1.25817 0.86631 0.98253 0.86970 1.68507 1.41613 0.99278 1.15496 1.23626 0.90540 0.97277 0.86747 1.21578 0.96977 0.96091 1.10710 1.17791 0.81254 0.82756 0.81261 1.90736 1.34114 1.79101 1.37984 1.47790 1.47581 1.12802 1.23389 1.21800 0.91841 1.02025 0.85733 1.20991 0.93161 0.96242 0.87693 1.42301 1.06499 1.75562 1.13860 1.19468 0.92885 1.32786 0.92984 0.91073 1.25479 0.95763 1.02982 1.01556 1.69784 1.03034 1.55014 1.33438 0.85300 0.76941 0.78498 0.79555 1.20198 1.21932 1.20754 1.20525 0.95975 0.79553 1.00653 1.20193 0.98679 0.98323 0.94420 1.21283 0.99690 0.98586 0.93488 1.21406 0.96411 0.96725 1.00569 1.21489 0.97938 0.98824 0.95487 1.21446 0.99798 0.99363 0.94053 1.21318 0.95085 0.95891 1.00730 0.87839 0.90634 0.88804 0.75315 0.79738 0.88114 0.90424 0.97710 0.95251 0.79080 0.93835 0.87703 0.89102 0.86511 0.84782 0.83962 0.84133 0.85046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.51 9.30 71.23 0.66 -1.84 16 2 C 0.21 6.12 6.86 42.92 0.29 6.41 16 3 N -0.53 -15.43 10.36 -187.07 -1.94 -17.37 16 4 C 0.31 8.21 12.27 180.84 2.22 10.43 16 5 N -0.54 -15.29 10.42 -198.98 -2.07 -17.36 16 6 C 0.18 5.08 8.87 85.07 0.75 5.84 16 7 C -0.25 -7.05 4.95 -19.91 -0.10 -7.15 16 8 C 0.58 16.38 6.16 86.78 0.53 16.91 16 9 O -0.54 -16.57 14.77 -3.88 -0.06 -16.63 16 10 N -0.59 -15.01 2.47 -829.60 -2.05 -17.06 16 11 C 0.11 3.14 5.33 86.38 0.46 3.60 16 12 C 0.15 5.50 6.58 86.38 0.57 6.07 16 13 N -0.74 -35.63 5.60 -343.45 -1.92 -37.55 16 14 C -0.25 -13.56 9.99 84.03 0.84 -12.72 16 15 H 0.07 3.76 7.83 -2.91 -0.02 3.74 16 16 C -0.06 -3.61 5.50 84.86 0.47 -3.15 16 17 N -0.96 -56.97 13.06 21.65 0.28 -56.69 16 18 Si 0.97 45.12 29.55 68.60 2.03 47.15 16 19 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 20 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 21 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 22 C 0.15 3.44 5.53 85.63 0.47 3.92 16 23 C -0.12 -2.51 5.42 -19.87 -0.11 -2.61 16 24 C -0.11 -2.50 9.54 22.27 0.21 -2.29 16 25 C -0.13 -2.53 10.05 22.27 0.22 -2.30 16 26 C -0.12 -2.01 10.05 22.27 0.22 -1.79 16 27 C -0.13 -2.25 10.05 22.27 0.22 -2.03 16 28 C -0.11 -2.21 9.68 22.27 0.22 -1.99 16 29 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.07 1.91 7.29 -2.39 -0.02 1.89 16 31 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.23 4.27 8.06 -2.91 -0.02 4.25 16 33 H 0.19 4.31 7.51 -2.91 -0.02 4.29 16 34 H 0.10 2.65 8.07 -2.39 -0.02 2.63 16 35 H 0.08 2.30 4.47 -2.39 -0.01 2.29 16 36 H 0.00 0.20 8.14 -2.38 -0.02 0.18 16 37 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.38 19.10 7.67 -92.71 -0.71 18.38 16 39 H 0.25 14.58 8.31 -92.70 -0.77 13.81 16 40 H 0.10 2.09 7.94 -2.39 -0.02 2.07 16 41 H 0.09 2.08 7.47 -2.39 -0.02 2.06 16 42 H 0.12 2.86 7.01 -2.91 -0.02 2.84 16 43 H 0.13 2.04 8.06 -2.92 -0.02 2.02 16 44 H 0.14 1.67 8.06 -2.91 -0.02 1.64 16 45 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 46 H 0.13 2.34 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -68.07 390.12 2.73 -65.34 By element: Atomic # 1 Polarization: 34.58 SS G_CDS: 0.29 Total: 34.88 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: 8.17 Total: 15.29 kcal Atomic # 7 Polarization: -138.33 SS G_CDS: -7.70 Total: -146.03 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -0.06 Total: -16.63 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -68.07 2.73 -65.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699980606.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.784 kcal (2) G-P(sol) polarization free energy of solvation -68.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds