Wall clock time and date at job start Tue Mar 31 2020 23:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38549 * 120.01258 * 2 1 4 4 C 1.40077 * 117.81558 * 180.02562 * 3 2 1 5 5 C 1.48132 * 121.14563 * 180.02562 * 4 3 2 6 6 O 1.21514 * 119.99928 * 359.97438 * 5 4 3 7 7 N 1.34776 * 120.00029 * 180.02562 * 5 4 3 8 8 C 1.46503 * 120.00225 * 179.97438 * 7 5 4 9 9 C 1.50696 * 109.47412 * 179.97438 * 8 7 5 10 10 C 1.38231 * 120.00232 * 269.73041 * 9 8 7 11 11 C 1.38241 * 119.99836 * 179.76493 * 10 9 8 12 12 C 1.38228 * 119.99903 * 0.50776 * 11 10 9 13 13 C 1.50707 * 120.00053 * 179.72356 * 12 11 10 14 14 H 1.09000 * 109.47254 * 160.01866 * 13 12 11 15 15 C 1.52995 * 109.47073 * 280.02507 * 13 12 11 16 16 N 1.46501 * 109.46727 * 40.02219 * 13 12 11 17 17 C 1.36940 * 119.99728 * 155.00256 * 16 13 12 18 18 H 1.07994 * 120.00360 * 359.97438 * 17 16 13 19 19 C 1.38813 * 119.99551 * 179.97438 * 17 16 13 20 20 N 1.31612 * 120.00487 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99514 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47400 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.46802 * 120.00002 * 21 19 17 24 24 H 1.48504 * 109.46834 * 239.99744 * 21 19 17 25 25 C 1.38234 * 120.00122 * 359.74661 * 12 11 10 26 26 C 1.38229 * 120.00177 * 359.97438 * 25 12 11 27 27 C 1.39772 * 117.70623 * 0.02562 * 4 3 2 28 28 N 1.31886 * 119.65777 * 359.97438 * 27 4 3 29 29 N 1.28284 * 122.32918 * 359.97438 * 28 27 4 30 30 H 1.08998 * 109.47434 * 269.97597 * 1 2 3 31 31 H 1.09001 * 109.46885 * 29.98003 * 1 2 3 32 32 H 1.09004 * 109.47045 * 149.97737 * 1 2 3 33 33 H 1.07992 * 121.09374 * 0.02562 * 3 2 1 34 34 H 0.96998 * 120.00285 * 0.02562 * 7 5 4 35 35 H 1.08998 * 109.47210 * 300.00729 * 8 7 5 36 36 H 1.09000 * 109.46746 * 60.00146 * 8 7 5 37 37 H 1.07995 * 120.00047 * 359.97438 * 10 9 8 38 38 H 1.07997 * 119.99567 * 180.23132 * 11 10 9 39 39 H 1.09000 * 109.47604 * 59.99573 * 15 13 12 40 40 H 1.08997 * 109.47188 * 179.97438 * 15 13 12 41 41 H 1.09006 * 109.46782 * 299.99642 * 15 13 12 42 42 H 0.97004 * 120.00444 * 334.99644 * 16 13 12 43 43 H 0.96997 * 120.00440 * 180.02562 * 20 19 17 44 44 H 1.08002 * 119.99727 * 179.97438 * 25 12 11 45 45 H 1.08000 * 120.00037 * 179.97438 * 26 25 12 46 46 H 1.08003 * 120.16545 * 180.02562 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2000 1.1997 0.0000 4 6 3.5997 1.1460 -0.0006 5 6 4.4139 2.3835 0.0000 6 8 3.8688 3.4695 0.0004 7 7 5.7594 2.3049 -0.0011 8 6 6.5647 3.5288 -0.0011 9 6 8.0277 3.1675 -0.0018 10 6 8.7006 3.0070 1.1950 11 6 10.0415 2.6709 1.1943 12 6 10.7120 2.5055 -0.0031 13 6 12.1753 2.1452 -0.0039 14 1 12.4436 1.7172 -0.9698 15 6 13.0103 3.4024 0.2467 16 7 12.4375 1.1660 1.0538 17 6 13.5071 0.3170 0.9509 18 1 14.1570 0.3690 0.0900 19 6 13.7559 -0.6104 1.9534 20 7 12.9642 -0.6735 3.0028 21 14 15.2145 -1.7689 1.8128 22 1 15.9420 -1.4976 0.5470 23 1 16.1277 -1.5570 2.9644 24 1 14.7328 -3.1737 1.8150 25 6 10.0403 2.6712 -1.2000 26 6 8.6981 3.0017 -1.1993 27 6 4.2017 -0.1154 -0.0016 28 7 3.4484 -1.1980 -0.0016 29 7 2.1668 -1.1419 -0.0001 30 1 -0.3634 -0.0004 1.0276 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6782 2.1452 0.0004 34 1 6.1946 1.4381 -0.0026 35 1 6.3344 4.1152 -0.8906 36 1 6.3358 4.1143 0.8893 37 1 8.1779 3.1409 2.1305 38 1 10.5662 2.5418 2.1294 39 1 12.7419 3.8304 1.2126 40 1 14.0686 3.1418 0.2466 41 1 12.8151 4.1310 -0.5403 42 1 11.8536 1.1190 1.8270 43 1 13.1382 -1.3213 3.7035 44 1 10.5644 2.5424 -2.1355 45 1 8.1735 3.1315 -2.1344 46 1 5.2781 -0.2031 -0.0017 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700095716.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:32 Heat of formation + Delta-G solvation = 54.265315 kcal Electronic energy + Delta-G solvation = -27461.724338 eV Core-core repulsion = 23544.883776 eV Total energy + Delta-G solvation = -3916.840562 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.68092 -40.02133 -39.20769 -36.14483 -34.90485 -34.34320 -33.69035 -32.36294 -30.81564 -30.40422 -28.78483 -28.43580 -26.74494 -24.94772 -24.22428 -23.83922 -22.67007 -21.73905 -21.07360 -19.80738 -18.62216 -18.06779 -17.48024 -16.81270 -16.16686 -16.06113 -15.79077 -15.50737 -15.13217 -14.89781 -14.67548 -14.36065 -14.01719 -13.80239 -13.55008 -13.47986 -13.39168 -13.22563 -12.98465 -12.90352 -12.66381 -12.32058 -12.03650 -11.74894 -11.42609 -11.22466 -10.98562 -10.91722 -10.88606 -10.68749 -10.67725 -10.33097 -10.23005 -10.05979 -10.01677 -9.73527 -9.50613 -9.03307 -8.73630 -8.42902 -7.04961 -5.83463 -3.12405 -0.12755 0.38113 1.33768 1.59507 2.32005 2.69381 3.16252 3.39558 3.45353 3.47509 3.48577 3.82493 3.92109 4.02292 4.15189 4.32764 4.53749 4.54663 4.66156 4.86151 4.86660 5.04051 5.11282 5.20077 5.20471 5.30424 5.33748 5.43358 5.49083 5.50918 5.64275 5.68556 5.70396 5.87593 5.92118 5.95711 6.16489 6.23718 6.28162 6.43626 6.54746 6.62492 6.68544 6.88974 6.99819 7.08902 7.18513 7.64168 7.64846 8.20917 8.34716 9.46395 10.01211 10.36335 11.39161 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012761 B = 0.002152 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.709980 B =13006.519793 C =14678.009538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.066 3.934 3 C -0.058 4.058 4 C -0.128 4.128 5 C 0.562 3.438 6 O -0.528 6.528 7 N -0.712 5.712 8 C 0.168 3.832 9 C -0.136 4.136 10 C -0.097 4.097 11 C -0.106 4.106 12 C -0.050 4.050 13 C 0.203 3.797 14 H 0.057 0.943 15 C -0.160 4.160 16 N -0.721 5.721 17 C -0.240 4.240 18 H 0.072 0.928 19 C -0.012 4.012 20 N -0.932 5.932 21 Si 0.907 3.093 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C -0.121 4.121 26 C -0.101 4.101 27 C 0.064 3.936 28 N -0.233 5.233 29 N -0.228 5.228 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.163 0.837 34 H 0.405 0.595 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.119 0.881 38 H 0.129 0.871 39 H 0.048 0.952 40 H 0.058 0.942 41 H 0.038 0.962 42 H 0.385 0.615 43 H 0.255 0.745 44 H 0.122 0.878 45 H 0.118 0.882 46 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.626 8.058 -7.660 24.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.079 4.079 3 C -0.088 4.088 4 C -0.143 4.143 5 C 0.347 3.653 6 O -0.404 6.404 7 N -0.363 5.363 8 C 0.046 3.954 9 C -0.137 4.137 10 C -0.116 4.116 11 C -0.124 4.124 12 C -0.051 4.051 13 C 0.093 3.907 14 H 0.074 0.926 15 C -0.220 4.220 16 N -0.364 5.364 17 C -0.371 4.371 18 H 0.090 0.910 19 C -0.208 4.208 20 N -0.580 5.580 21 Si 0.738 3.262 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.218 1.218 25 C -0.140 4.140 26 C -0.119 4.119 27 C -0.101 4.101 28 N -0.073 5.073 29 N -0.072 5.072 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.181 0.819 34 H 0.241 0.759 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.137 0.863 38 H 0.147 0.853 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.057 0.943 42 H 0.220 0.780 43 H 0.065 0.935 44 H 0.140 0.860 45 H 0.136 0.864 46 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -21.887 7.082 -7.703 24.260 hybrid contribution 1.146 0.439 0.334 1.271 sum -20.742 7.521 -7.370 23.261 Atomic orbital electron populations 1.20732 0.86742 1.04465 1.04059 1.23003 0.99534 0.89852 0.95483 1.22503 0.93082 1.00727 0.92511 1.21261 0.95331 0.95216 1.02456 1.17895 0.82303 0.87920 0.77196 1.90801 1.71855 1.28380 1.49392 1.46086 1.05269 1.11011 1.73957 1.20230 0.86324 0.85693 1.03180 1.19597 0.94271 1.05833 0.93959 1.21025 0.94650 0.98893 0.97028 1.21104 0.94034 0.98477 0.98773 1.20565 0.97350 0.94430 0.92788 1.19267 0.87251 0.90184 0.93996 0.92554 1.22423 1.01322 0.98047 1.00205 1.42524 1.33085 1.38973 1.21771 1.19281 1.03358 1.10435 1.04036 0.90994 1.24745 0.99234 0.99873 0.96994 1.69656 1.39277 1.38673 1.10362 0.86119 0.82034 0.80805 0.77233 1.20519 1.21851 1.21818 1.21030 0.94183 1.00887 0.97877 1.20929 0.94564 0.99532 0.96914 1.24602 1.02746 0.88752 0.93974 1.73107 0.99102 1.26719 1.08383 1.72881 1.01951 1.24973 1.07415 0.89441 0.89879 0.89541 0.81929 0.75870 0.90370 0.90312 0.86258 0.85282 0.93307 0.92334 0.94301 0.78009 0.93474 0.86024 0.86416 0.80612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.48 10.19 36.01 0.37 -0.11 16 2 C 0.07 0.55 6.86 -82.46 -0.57 -0.02 16 3 C -0.06 -0.48 9.43 -38.78 -0.37 -0.85 16 4 C -0.13 -1.19 5.92 -104.57 -0.62 -1.81 16 5 C 0.56 5.79 7.80 -12.20 -0.10 5.69 16 6 O -0.53 -6.89 16.49 5.35 0.09 -6.80 16 7 N -0.71 -6.46 5.51 -62.34 -0.34 -6.81 16 8 C 0.17 1.62 5.80 -5.19 -0.03 1.59 16 9 C -0.14 -1.52 5.25 -104.63 -0.55 -2.07 16 10 C -0.10 -1.25 9.70 -39.58 -0.38 -1.63 16 11 C -0.11 -1.65 9.05 -39.58 -0.36 -2.01 16 12 C -0.05 -0.81 4.95 -104.62 -0.52 -1.33 16 13 C 0.20 3.85 3.09 -69.08 -0.21 3.64 16 14 H 0.06 1.08 7.94 -51.93 -0.41 0.67 16 15 C -0.16 -2.77 9.47 37.16 0.35 -2.42 16 16 N -0.72 -17.28 5.07 -54.55 -0.28 -17.56 16 17 C -0.24 -6.44 9.93 -15.06 -0.15 -6.59 16 18 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 19 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 20 N -0.93 -27.42 13.06 55.49 0.72 -26.69 16 21 Si 0.91 21.95 29.55 -169.99 -5.02 16.93 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 25 C -0.12 -1.65 9.67 -39.59 -0.38 -2.03 16 26 C -0.10 -1.16 9.70 -39.58 -0.38 -1.54 16 27 C 0.06 0.60 10.84 -16.96 -0.18 0.42 16 28 N -0.23 -2.74 11.49 30.78 0.35 -2.39 16 29 N -0.23 -2.56 11.40 33.58 0.38 -2.18 16 30 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.08 0.23 8.09 -51.93 -0.42 -0.19 16 32 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.16 1.07 7.80 -52.49 -0.41 0.66 16 34 H 0.41 3.16 6.62 -40.82 -0.27 2.89 16 35 H 0.08 0.73 8.09 -51.93 -0.42 0.31 16 36 H 0.08 0.77 8.08 -51.93 -0.42 0.35 16 37 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 38 H 0.13 2.21 6.92 -52.49 -0.36 1.84 16 39 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.38 9.71 6.07 -40.82 -0.25 9.46 16 43 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.12 1.47 8.04 -52.49 -0.42 1.05 16 45 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 46 H 0.18 1.22 6.54 -52.48 -0.34 0.87 16 LS Contribution 394.20 15.07 5.94 5.94 Total: -1.00 -33.04 394.20 -8.56 -41.60 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -6.23 Total: 9.46 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -4.18 Total: -11.51 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: 0.84 Total: -55.62 kcal Atomic # 8 Polarization: -6.89 SS G_CDS: 0.09 Total: -6.80 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.04 -8.56 -41.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700095716.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.869 kcal (2) G-P(sol) polarization free energy of solvation -33.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds