Wall clock time and date at job start Tue Mar 31 2020 23:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38549 * 120.01258 * 2 1 4 4 C 1.40077 * 117.81558 * 180.02562 * 3 2 1 5 5 C 1.48132 * 121.14563 * 180.02562 * 4 3 2 6 6 O 1.21514 * 119.99928 * 359.97438 * 5 4 3 7 7 N 1.34776 * 120.00029 * 180.02562 * 5 4 3 8 8 C 1.46503 * 120.00225 * 179.97438 * 7 5 4 9 9 C 1.50696 * 109.47412 * 179.97438 * 8 7 5 10 10 C 1.38231 * 120.00232 * 269.73041 * 9 8 7 11 11 C 1.38241 * 119.99836 * 179.76493 * 10 9 8 12 12 C 1.38228 * 119.99903 * 0.50776 * 11 10 9 13 13 C 1.50707 * 120.00053 * 179.72356 * 12 11 10 14 14 H 1.09000 * 109.47254 * 160.01866 * 13 12 11 15 15 C 1.52995 * 109.47073 * 280.02507 * 13 12 11 16 16 N 1.46501 * 109.46727 * 40.02219 * 13 12 11 17 17 C 1.36940 * 119.99728 * 155.00256 * 16 13 12 18 18 H 1.07994 * 120.00360 * 359.97438 * 17 16 13 19 19 C 1.38813 * 119.99551 * 179.97438 * 17 16 13 20 20 N 1.31612 * 120.00487 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99514 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47400 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.46802 * 120.00002 * 21 19 17 24 24 H 1.48504 * 109.46834 * 239.99744 * 21 19 17 25 25 C 1.38234 * 120.00122 * 359.74661 * 12 11 10 26 26 C 1.38229 * 120.00177 * 359.97438 * 25 12 11 27 27 C 1.39772 * 117.70623 * 0.02562 * 4 3 2 28 28 N 1.31886 * 119.65777 * 359.97438 * 27 4 3 29 29 N 1.28284 * 122.32918 * 359.97438 * 28 27 4 30 30 H 1.08998 * 109.47434 * 269.97597 * 1 2 3 31 31 H 1.09001 * 109.46885 * 29.98003 * 1 2 3 32 32 H 1.09004 * 109.47045 * 149.97737 * 1 2 3 33 33 H 1.07992 * 121.09374 * 0.02562 * 3 2 1 34 34 H 0.96998 * 120.00285 * 0.02562 * 7 5 4 35 35 H 1.08998 * 109.47210 * 300.00729 * 8 7 5 36 36 H 1.09000 * 109.46746 * 60.00146 * 8 7 5 37 37 H 1.07995 * 120.00047 * 359.97438 * 10 9 8 38 38 H 1.07997 * 119.99567 * 180.23132 * 11 10 9 39 39 H 1.09000 * 109.47604 * 59.99573 * 15 13 12 40 40 H 1.08997 * 109.47188 * 179.97438 * 15 13 12 41 41 H 1.09006 * 109.46782 * 299.99642 * 15 13 12 42 42 H 0.97004 * 120.00444 * 334.99644 * 16 13 12 43 43 H 0.96997 * 120.00440 * 180.02562 * 20 19 17 44 44 H 1.08002 * 119.99727 * 179.97438 * 25 12 11 45 45 H 1.08000 * 120.00037 * 179.97438 * 26 25 12 46 46 H 1.08003 * 120.16545 * 180.02562 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2000 1.1997 0.0000 4 6 3.5997 1.1460 -0.0006 5 6 4.4139 2.3835 0.0000 6 8 3.8688 3.4695 0.0004 7 7 5.7594 2.3049 -0.0011 8 6 6.5647 3.5288 -0.0011 9 6 8.0277 3.1675 -0.0018 10 6 8.7006 3.0070 1.1950 11 6 10.0415 2.6709 1.1943 12 6 10.7120 2.5055 -0.0031 13 6 12.1753 2.1452 -0.0039 14 1 12.4436 1.7172 -0.9698 15 6 13.0103 3.4024 0.2467 16 7 12.4375 1.1660 1.0538 17 6 13.5071 0.3170 0.9509 18 1 14.1570 0.3690 0.0900 19 6 13.7559 -0.6104 1.9534 20 7 12.9642 -0.6735 3.0028 21 14 15.2145 -1.7689 1.8128 22 1 15.9420 -1.4976 0.5470 23 1 16.1277 -1.5570 2.9644 24 1 14.7328 -3.1737 1.8150 25 6 10.0403 2.6712 -1.2000 26 6 8.6981 3.0017 -1.1993 27 6 4.2017 -0.1154 -0.0016 28 7 3.4484 -1.1980 -0.0016 29 7 2.1668 -1.1419 -0.0001 30 1 -0.3634 -0.0004 1.0276 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6782 2.1452 0.0004 34 1 6.1946 1.4381 -0.0026 35 1 6.3344 4.1152 -0.8906 36 1 6.3358 4.1143 0.8893 37 1 8.1779 3.1409 2.1305 38 1 10.5662 2.5418 2.1294 39 1 12.7419 3.8304 1.2126 40 1 14.0686 3.1418 0.2466 41 1 12.8151 4.1310 -0.5403 42 1 11.8536 1.1190 1.8270 43 1 13.1382 -1.3213 3.7035 44 1 10.5644 2.5424 -2.1355 45 1 8.1735 3.1315 -2.1344 46 1 5.2781 -0.2031 -0.0017 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700095716.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:31 Heat of formation + Delta-G solvation = 33.069723 kcal Electronic energy + Delta-G solvation = -27462.643448 eV Core-core repulsion = 23544.883776 eV Total energy + Delta-G solvation = -3917.759672 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.39581 -40.92040 -40.22888 -37.47447 -35.98855 -35.03538 -34.53305 -33.99215 -31.93921 -31.65754 -30.06324 -29.31829 -27.69192 -26.08399 -25.50122 -24.83347 -23.78068 -22.94464 -21.83643 -21.09948 -19.43897 -19.33227 -18.76008 -17.56462 -17.19205 -16.94137 -16.83442 -16.57245 -16.25123 -15.97283 -15.75225 -15.53996 -15.03433 -15.00019 -14.69029 -14.50018 -14.39790 -14.26082 -13.84856 -13.77760 -13.59236 -13.42057 -13.24705 -13.05889 -12.87964 -12.71506 -12.43954 -12.11982 -12.08394 -12.00883 -11.76338 -11.60407 -11.51467 -11.41488 -11.01837 -10.87441 -10.78553 -10.29057 -9.78451 -9.56045 -9.02279 -7.94532 -5.22505 -0.84018 -0.26757 0.29028 0.54102 1.47473 1.47704 1.54802 1.57514 1.89523 2.45385 2.55716 2.86759 2.89535 3.16206 3.35979 3.40259 3.45670 3.63657 3.72350 3.87781 3.99262 4.04438 4.10595 4.16142 4.31065 4.35862 4.54306 4.60093 4.60954 4.68361 4.74413 4.77415 4.80350 4.83198 4.98405 5.01055 5.07043 5.12421 5.15160 5.22789 5.25723 5.42172 5.51178 5.56099 5.62610 5.85069 6.10130 6.24564 6.28111 6.87243 7.34462 7.50338 8.09292 8.33047 9.29118 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012761 B = 0.002152 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.709980 B =13006.519793 C =14678.009538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.068 3.932 3 C -0.053 4.053 4 C -0.135 4.135 5 C 0.569 3.431 6 O -0.555 6.555 7 N -0.704 5.704 8 C 0.172 3.828 9 C -0.118 4.118 10 C -0.096 4.096 11 C -0.125 4.125 12 C -0.073 4.073 13 C 0.198 3.802 14 H 0.055 0.945 15 C -0.149 4.149 16 N -0.734 5.734 17 C -0.236 4.236 18 H 0.077 0.923 19 C -0.076 4.076 20 N -0.969 5.969 21 Si 0.970 3.030 22 H -0.265 1.265 23 H -0.296 1.296 24 H -0.295 1.295 25 C -0.122 4.122 26 C -0.090 4.090 27 C 0.065 3.935 28 N -0.268 5.268 29 N -0.260 5.260 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.086 0.914 33 H 0.182 0.818 34 H 0.412 0.588 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.133 0.867 38 H 0.102 0.898 39 H 0.040 0.960 40 H 0.041 0.959 41 H 0.069 0.931 42 H 0.375 0.625 43 H 0.250 0.750 44 H 0.137 0.863 45 H 0.150 0.850 46 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.199 9.251 -9.491 26.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.077 4.077 3 C -0.083 4.083 4 C -0.149 4.149 5 C 0.354 3.646 6 O -0.434 6.434 7 N -0.356 5.356 8 C 0.050 3.950 9 C -0.119 4.119 10 C -0.115 4.115 11 C -0.144 4.144 12 C -0.074 4.074 13 C 0.090 3.910 14 H 0.073 0.927 15 C -0.209 4.209 16 N -0.375 5.375 17 C -0.368 4.368 18 H 0.095 0.905 19 C -0.269 4.269 20 N -0.620 5.620 21 Si 0.799 3.201 22 H -0.189 1.189 23 H -0.223 1.223 24 H -0.223 1.223 25 C -0.141 4.141 26 C -0.109 4.109 27 C -0.101 4.101 28 N -0.107 5.107 29 N -0.103 5.103 30 H 0.118 0.882 31 H 0.125 0.875 32 H 0.105 0.895 33 H 0.199 0.801 34 H 0.250 0.750 35 H 0.108 0.892 36 H 0.099 0.901 37 H 0.151 0.849 38 H 0.121 0.879 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.088 0.912 42 H 0.208 0.792 43 H 0.059 0.941 44 H 0.155 0.845 45 H 0.167 0.833 46 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -23.443 8.282 -9.583 26.645 hybrid contribution 1.516 0.192 0.838 1.742 sum -21.927 8.474 -8.745 25.081 Atomic orbital electron populations 1.20891 0.84146 1.05677 1.05191 1.23529 1.01139 0.89075 0.93986 1.22796 0.92854 1.01462 0.91184 1.21232 0.95816 0.94679 1.03172 1.17914 0.82422 0.87684 0.76538 1.90792 1.72358 1.29327 1.50946 1.45993 1.04992 1.11276 1.73297 1.20205 0.84986 0.85882 1.03952 1.19720 0.94997 1.03923 0.93250 1.21146 0.93505 0.98300 0.98542 1.20977 0.95371 1.00358 0.97679 1.20329 0.95839 0.97028 0.94162 1.19435 0.89836 0.89571 0.92201 0.92711 1.22262 0.99807 0.97926 1.00916 1.42722 1.32302 1.39669 1.22836 1.19662 1.03641 1.09942 1.03538 0.90491 1.25515 1.02088 1.02082 0.97171 1.69808 1.41228 1.39729 1.11246 0.85122 0.79096 0.78428 0.77430 1.18945 1.22301 1.22256 1.21200 0.95111 1.00469 0.97297 1.21243 0.93697 0.97690 0.98246 1.24837 1.03486 0.88369 0.93377 1.73022 0.99754 1.28016 1.09902 1.72799 1.02044 1.26630 1.08778 0.88171 0.87489 0.89504 0.80098 0.75040 0.89196 0.90102 0.84884 0.87947 0.94122 0.93935 0.91171 0.79198 0.94130 0.84510 0.83265 0.78838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.73 10.19 71.24 0.73 0.00 16 2 C 0.07 1.04 6.86 42.63 0.29 1.34 16 3 C -0.05 -0.77 9.43 22.79 0.22 -0.56 16 4 C -0.13 -2.28 5.92 -19.83 -0.12 -2.40 16 5 C 0.57 10.48 7.80 86.87 0.68 11.16 16 6 O -0.56 -13.27 16.49 -3.76 -0.06 -13.33 16 7 N -0.70 -10.96 5.51 -469.44 -2.59 -13.55 16 8 C 0.17 2.79 5.80 85.63 0.50 3.28 16 9 C -0.12 -2.32 5.25 -19.87 -0.10 -2.43 16 10 C -0.10 -2.35 9.70 22.27 0.22 -2.13 16 11 C -0.13 -3.97 9.05 22.27 0.20 -3.77 16 12 C -0.07 -2.32 4.95 -19.87 -0.10 -2.42 16 13 C 0.20 7.54 3.09 44.25 0.14 7.67 16 14 H 0.05 2.08 7.94 -2.39 -0.02 2.06 16 15 C -0.15 -5.15 9.47 71.98 0.68 -4.47 16 16 N -0.73 -36.09 5.07 -326.50 -1.66 -37.75 16 17 C -0.24 -12.85 9.93 84.03 0.83 -12.01 16 18 H 0.08 4.02 7.83 -2.91 -0.02 3.99 16 19 C -0.08 -4.34 5.50 84.86 0.47 -3.88 16 20 N -0.97 -58.80 13.06 21.65 0.28 -58.52 16 21 Si 0.97 45.84 29.55 68.60 2.03 47.86 16 22 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 23 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 24 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 25 C -0.12 -3.04 9.67 22.27 0.22 -2.83 16 26 C -0.09 -1.77 9.70 22.27 0.22 -1.56 16 27 C 0.07 1.16 10.84 85.06 0.92 2.08 16 28 N -0.27 -6.23 11.49 -56.52 -0.65 -6.88 16 29 N -0.26 -5.71 11.40 -47.69 -0.54 -6.25 16 30 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.11 0.26 8.09 -2.39 -0.02 0.25 16 32 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.18 1.91 7.80 -2.91 -0.02 1.89 16 34 H 0.41 5.41 6.62 -92.71 -0.61 4.80 16 35 H 0.09 1.34 8.09 -2.39 -0.02 1.32 16 36 H 0.08 1.35 8.08 -2.39 -0.02 1.33 16 37 H 0.13 2.81 8.06 -2.91 -0.02 2.79 16 38 H 0.10 3.74 6.92 -2.91 -0.02 3.72 16 39 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 42 H 0.37 19.74 6.07 -92.71 -0.56 19.18 16 43 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 44 H 0.14 2.94 8.04 -2.91 -0.02 2.91 16 45 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 46 H 0.19 2.43 6.54 -2.91 -0.02 2.41 16 Total: -1.00 -72.99 394.20 2.64 -70.35 By element: Atomic # 1 Polarization: 31.13 SS G_CDS: -0.16 Total: 30.98 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: 5.98 Total: -12.91 kcal Atomic # 7 Polarization: -117.80 SS G_CDS: -5.15 Total: -122.95 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: -0.06 Total: -13.33 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.86 kcal Total: -72.99 2.64 -70.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700095716.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.418 kcal (2) G-P(sol) polarization free energy of solvation -72.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds