Wall clock time and date at job start Tue Mar 31 2020 23:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38546 * 120.01740 * 2 1 4 4 C 1.40074 * 117.81834 * 180.02562 * 3 2 1 5 5 C 1.48132 * 121.14644 * 180.02562 * 4 3 2 6 6 O 1.21513 * 120.00122 * 330.39301 * 5 4 3 7 7 N 1.34772 * 119.99869 * 150.39601 * 5 4 3 8 8 C 1.46499 * 120.00037 * 6.30492 * 7 5 4 9 9 C 1.53003 * 109.46816 * 98.67645 * 8 7 5 10 10 N 1.46502 * 109.47192 * 179.97438 * 9 8 7 11 11 C 1.36937 * 120.00116 * 179.97438 * 10 9 8 12 12 H 1.07994 * 119.99780 * 359.97438 * 11 10 9 13 13 C 1.38809 * 120.00089 * 180.02562 * 11 10 9 14 14 N 1.31627 * 119.99800 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 120.00232 * 179.97438 * 13 11 10 16 16 H 1.48508 * 109.47004 * 59.99418 * 15 13 11 17 17 H 1.48503 * 109.47446 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47265 * 300.00102 * 15 13 11 19 19 C 1.46509 * 120.00021 * 186.31284 * 7 5 4 20 20 C 1.50696 * 109.47211 * 84.07023 * 19 7 5 21 21 C 1.38236 * 120.00387 * 264.60317 * 20 19 7 22 22 C 1.38238 * 120.00056 * 179.76851 * 21 20 19 23 23 C 1.38230 * 119.99951 * 0.48139 * 22 21 20 24 24 C 1.38238 * 120.00340 * 359.79009 * 23 22 21 25 25 C 1.38236 * 119.99515 * 359.95968 * 24 23 22 26 26 C 1.39765 * 117.70556 * 0.02562 * 4 3 2 27 27 N 1.31894 * 119.65755 * 0.02562 * 26 4 3 28 28 N 1.28283 * 122.32866 * 359.97438 * 27 26 4 29 29 H 1.08999 * 109.47333 * 269.98157 * 1 2 3 30 30 H 1.08997 * 109.47090 * 29.97623 * 1 2 3 31 31 H 1.09003 * 109.47346 * 149.97650 * 1 2 3 32 32 H 1.08003 * 121.08984 * 0.02562 * 3 2 1 33 33 H 1.09007 * 109.47213 * 218.66737 * 8 7 5 34 34 H 1.08995 * 109.47576 * 338.67548 * 8 7 5 35 35 H 1.09007 * 109.46488 * 299.99536 * 9 8 7 36 36 H 1.09000 * 109.47598 * 59.99619 * 9 8 7 37 37 H 0.96999 * 119.99351 * 359.97438 * 10 9 8 38 38 H 0.96994 * 119.99658 * 180.02562 * 14 13 11 39 39 H 1.09000 * 109.47033 * 204.07195 * 19 7 5 40 40 H 1.08994 * 109.46653 * 324.07156 * 19 7 5 41 41 H 1.07998 * 119.99641 * 359.97438 * 21 20 19 42 42 H 1.07994 * 119.99650 * 180.25302 * 22 21 20 43 43 H 1.07995 * 120.00157 * 179.77341 * 23 22 21 44 44 H 1.08002 * 120.00470 * 179.97438 * 24 23 22 45 45 H 1.08003 * 119.99721 * 180.02562 * 25 24 23 46 46 H 1.08001 * 120.17298 * 180.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2001 1.1996 0.0000 4 6 3.5998 1.1459 -0.0006 5 6 4.4141 2.3833 0.0000 6 8 3.9836 3.3942 -0.5191 7 7 5.6324 2.3880 0.5761 8 6 6.2098 1.1390 1.0788 9 6 7.1906 0.5789 0.0466 10 7 7.7685 -0.6699 0.5494 11 6 8.6791 -1.3569 -0.2082 12 1 8.9709 -0.9783 -1.1766 13 6 9.2263 -2.5404 0.2680 14 7 8.8702 -3.0020 1.4481 15 14 10.4678 -3.4778 -0.7658 16 1 11.6486 -2.6151 -1.0245 17 1 10.8973 -4.6987 -0.0375 18 1 9.8452 -3.8647 -2.0573 19 6 6.3794 3.6423 0.6999 20 6 5.9288 4.3753 1.9370 21 6 4.9584 5.3555 1.8448 22 6 4.5417 6.0246 2.9805 23 6 5.1024 5.7204 4.2068 24 6 6.0769 4.7442 4.2982 25 6 6.4899 4.0715 3.1634 26 6 4.2017 -0.1155 -0.0016 27 7 3.4483 -1.1981 -0.0026 28 7 2.1667 -1.1420 -0.0021 29 1 -0.3634 -0.0003 1.0276 30 1 -0.3633 0.8902 -0.5134 31 1 -0.3634 -0.8898 -0.5142 32 1 1.6783 2.1452 0.0004 33 1 6.7369 1.3324 2.0131 34 1 5.4139 0.4152 1.2537 35 1 6.6635 0.3854 -0.8877 36 1 7.9866 1.3026 -0.1284 37 1 7.5061 -1.0100 1.4191 38 1 9.2528 -3.8288 1.7810 39 1 7.4449 3.4248 0.7743 40 1 6.1955 4.2626 -0.1772 41 1 4.5235 5.5962 0.8860 42 1 3.7806 6.7874 2.9090 43 1 4.7795 6.2456 5.0934 44 1 6.5153 4.5068 5.2563 45 1 7.2509 3.3085 3.2349 46 1 5.2781 -0.2034 -0.0017 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717004843.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:53 Heat of formation + Delta-G solvation = 93.697101 kcal Electronic energy + Delta-G solvation = -29202.995380 eV Core-core repulsion = 25287.864709 eV Total energy + Delta-G solvation = -3915.130671 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.52344 -40.04224 -38.91011 -36.74866 -34.53490 -34.05449 -33.54539 -31.94250 -31.09049 -31.00006 -28.62373 -27.91878 -26.95698 -24.75058 -24.10427 -23.40236 -22.66436 -21.78156 -21.60098 -19.65865 -18.35152 -17.52415 -17.08160 -16.89746 -16.60160 -16.01219 -15.77670 -15.28517 -15.13569 -14.96699 -14.51221 -14.42891 -14.14024 -13.68157 -13.53771 -13.42154 -13.27478 -13.07695 -13.03281 -12.80643 -12.64716 -12.57631 -12.00334 -11.73753 -11.46008 -11.30837 -11.08698 -10.97072 -10.82274 -10.73633 -10.56885 -10.24125 -10.19314 -9.83367 -9.71473 -9.55980 -9.02982 -8.98206 -8.94578 -8.79846 -7.08009 -5.83949 -3.15982 0.31655 0.79882 1.13213 1.29593 2.55246 2.75303 3.41968 3.46881 3.47429 3.49254 3.71604 3.92494 4.05559 4.36501 4.45030 4.55834 4.65329 4.68782 4.71539 4.88378 4.95095 5.01637 5.04936 5.12076 5.22310 5.30864 5.33232 5.37356 5.48418 5.50716 5.55682 5.59757 5.62999 5.73828 5.84631 5.85957 5.90875 5.94937 6.07276 6.17046 6.33448 6.38547 6.44183 6.49549 6.50885 6.87465 7.14535 7.63009 7.86945 8.32222 8.67807 9.44640 9.94177 10.29281 11.37997 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007593 B = 0.004010 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3686.915852 B = 6980.214613 C = 9751.710439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.057 3.943 3 C -0.065 4.065 4 C -0.131 4.131 5 C 0.569 3.431 6 O -0.528 6.528 7 N -0.588 5.588 8 C 0.064 3.936 9 C 0.130 3.870 10 N -0.728 5.728 11 C -0.249 4.249 12 H 0.071 0.929 13 C -0.005 4.005 14 N -0.928 5.928 15 Si 0.909 3.091 16 H -0.285 1.285 17 H -0.290 1.290 18 H -0.284 1.284 19 C 0.154 3.846 20 C -0.107 4.107 21 C -0.096 4.096 22 C -0.127 4.127 23 C -0.118 4.118 24 C -0.125 4.125 25 C -0.102 4.102 26 C 0.041 3.959 27 N -0.225 5.225 28 N -0.231 5.231 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.156 0.844 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.026 0.974 36 H 0.034 0.966 37 H 0.386 0.614 38 H 0.258 0.742 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.127 0.873 42 H 0.120 0.880 43 H 0.119 0.881 44 H 0.122 0.878 45 H 0.125 0.875 46 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.124 16.827 3.192 21.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.088 4.088 3 C -0.094 4.094 4 C -0.146 4.146 5 C 0.356 3.644 6 O -0.405 6.405 7 N -0.319 5.319 8 C -0.059 4.059 9 C 0.002 3.998 10 N -0.374 5.374 11 C -0.379 4.379 12 H 0.089 0.911 13 C -0.202 4.202 14 N -0.575 5.575 15 Si 0.739 3.261 16 H -0.212 1.212 17 H -0.216 1.216 18 H -0.211 1.211 19 C 0.033 3.967 20 C -0.108 4.108 21 C -0.114 4.114 22 C -0.145 4.145 23 C -0.137 4.137 24 C -0.143 4.143 25 C -0.120 4.120 26 C -0.122 4.122 27 N -0.065 5.065 28 N -0.074 5.074 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.103 0.897 32 H 0.174 0.826 33 H 0.107 0.893 34 H 0.118 0.882 35 H 0.043 0.957 36 H 0.052 0.948 37 H 0.220 0.780 38 H 0.068 0.932 39 H 0.116 0.884 40 H 0.112 0.888 41 H 0.145 0.855 42 H 0.138 0.862 43 H 0.137 0.863 44 H 0.140 0.860 45 H 0.143 0.857 46 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -13.269 15.634 2.778 20.693 hybrid contribution 0.828 0.854 -0.098 1.194 sum -12.442 16.488 2.680 20.829 Atomic orbital electron populations 1.20677 0.87115 1.04165 1.03699 1.22922 0.99276 0.90049 0.96533 1.22349 0.92863 1.00425 0.93804 1.21209 0.95200 0.95533 1.02635 1.17934 0.81149 0.86998 0.78298 1.90743 1.71185 1.33891 1.44641 1.47748 1.16797 1.08898 1.58452 1.22766 0.98850 0.85151 0.99117 1.21072 0.94164 0.90205 0.94385 1.42205 1.51002 1.22478 1.21716 1.19090 1.16324 1.02878 0.99656 0.91077 1.24740 1.00390 0.98067 0.96982 1.69639 1.46682 1.22958 1.18248 0.86259 0.81109 0.79306 0.79421 1.21213 1.21585 1.21079 1.20447 0.96228 0.84200 0.95866 1.20220 0.97919 0.97342 0.95349 1.21208 0.95922 0.95310 0.98982 1.21150 1.00289 1.00287 0.92785 1.21173 0.96959 0.97921 0.97604 1.21157 0.97840 0.96746 0.98510 1.21165 0.99649 0.99139 0.92067 1.26126 1.05192 0.88356 0.92504 1.73274 0.98504 1.26666 1.08029 1.72892 1.02581 1.24849 1.07121 0.89784 0.90216 0.89702 0.82591 0.89311 0.88157 0.95675 0.94828 0.77978 0.93243 0.88410 0.88813 0.85521 0.86228 0.86303 0.86017 0.85720 0.76974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.79 10.19 36.01 0.37 -0.43 16 2 C 0.06 0.71 6.86 -82.46 -0.57 0.15 16 3 C -0.06 -0.80 9.47 -38.78 -0.37 -1.17 16 4 C -0.13 -1.91 5.61 -104.58 -0.59 -2.50 16 5 C 0.57 8.29 7.45 -12.20 -0.09 8.20 16 6 O -0.53 -8.33 16.25 5.35 0.09 -8.24 16 7 N -0.59 -7.86 2.48 -176.07 -0.44 -8.30 16 8 C 0.06 0.93 4.96 -4.04 -0.02 0.91 16 9 C 0.13 2.33 5.49 -4.04 -0.02 2.31 16 10 N -0.73 -16.90 5.59 -59.91 -0.34 -17.24 16 11 C -0.25 -6.61 9.99 -15.06 -0.15 -6.76 16 12 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 13 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 14 N -0.93 -27.02 13.06 55.49 0.72 -26.30 16 15 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 16 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 C 0.15 1.81 5.54 -5.19 -0.03 1.78 16 20 C -0.11 -1.24 5.41 -104.62 -0.57 -1.81 16 21 C -0.10 -1.08 9.68 -39.58 -0.38 -1.47 16 22 C -0.13 -1.28 10.05 -39.58 -0.40 -1.67 16 23 C -0.12 -1.14 10.05 -39.58 -0.40 -1.53 16 24 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 25 C -0.10 -1.13 9.72 -39.58 -0.38 -1.51 16 26 C 0.04 0.68 8.84 -16.95 -0.15 0.53 16 27 N -0.22 -4.06 11.49 30.78 0.35 -3.71 16 28 N -0.23 -3.72 11.40 33.58 0.38 -3.33 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.47 8.09 -51.93 -0.42 0.05 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.16 1.57 8.03 -52.48 -0.42 1.15 16 33 H 0.09 1.21 8.05 -51.93 -0.42 0.79 16 34 H 0.10 1.53 4.01 -51.93 -0.21 1.32 16 35 H 0.03 0.48 7.11 -51.93 -0.37 0.11 16 36 H 0.03 0.60 8.03 -51.93 -0.42 0.18 16 37 H 0.39 9.40 7.67 -40.82 -0.31 9.09 16 38 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 39 H 0.10 1.04 7.89 -51.93 -0.41 0.63 16 40 H 0.09 1.10 7.43 -51.93 -0.39 0.71 16 41 H 0.13 1.45 7.84 -52.49 -0.41 1.04 16 42 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 43 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 44 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 45 H 0.12 1.30 7.98 -52.48 -0.42 0.88 16 46 H 0.21 3.67 2.75 -52.49 -0.14 3.53 16 LS Contribution 387.47 15.07 5.84 5.84 Total: -1.00 -32.18 387.47 -8.64 -40.82 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -6.00 Total: 10.47 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -4.24 Total: -6.86 kcal Atomic # 7 Polarization: -59.57 SS G_CDS: 0.69 Total: -58.88 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: 0.09 Total: -8.24 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.18 -8.64 -40.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717004843.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.518 kcal (2) G-P(sol) polarization free energy of solvation -32.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds