Wall clock time and date at job start Tue Mar 31 2020 23:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38546 * 120.01740 * 2 1 4 4 C 1.40074 * 117.81834 * 180.02562 * 3 2 1 5 5 C 1.48132 * 121.14644 * 180.02562 * 4 3 2 6 6 O 1.21513 * 120.00122 * 330.39301 * 5 4 3 7 7 N 1.34772 * 119.99869 * 150.39601 * 5 4 3 8 8 C 1.46499 * 120.00037 * 6.30492 * 7 5 4 9 9 C 1.53003 * 109.46816 * 98.67645 * 8 7 5 10 10 N 1.46502 * 109.47192 * 179.97438 * 9 8 7 11 11 C 1.36937 * 120.00116 * 179.97438 * 10 9 8 12 12 H 1.07994 * 119.99780 * 359.97438 * 11 10 9 13 13 C 1.38809 * 120.00089 * 180.02562 * 11 10 9 14 14 N 1.31627 * 119.99800 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 120.00232 * 179.97438 * 13 11 10 16 16 H 1.48508 * 109.47004 * 59.99418 * 15 13 11 17 17 H 1.48503 * 109.47446 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47265 * 300.00102 * 15 13 11 19 19 C 1.46509 * 120.00021 * 186.31284 * 7 5 4 20 20 C 1.50696 * 109.47211 * 84.07023 * 19 7 5 21 21 C 1.38236 * 120.00387 * 264.60317 * 20 19 7 22 22 C 1.38238 * 120.00056 * 179.76851 * 21 20 19 23 23 C 1.38230 * 119.99951 * 0.48139 * 22 21 20 24 24 C 1.38238 * 120.00340 * 359.79009 * 23 22 21 25 25 C 1.38236 * 119.99515 * 359.95968 * 24 23 22 26 26 C 1.39765 * 117.70556 * 0.02562 * 4 3 2 27 27 N 1.31894 * 119.65755 * 0.02562 * 26 4 3 28 28 N 1.28283 * 122.32866 * 359.97438 * 27 26 4 29 29 H 1.08999 * 109.47333 * 269.98157 * 1 2 3 30 30 H 1.08997 * 109.47090 * 29.97623 * 1 2 3 31 31 H 1.09003 * 109.47346 * 149.97650 * 1 2 3 32 32 H 1.08003 * 121.08984 * 0.02562 * 3 2 1 33 33 H 1.09007 * 109.47213 * 218.66737 * 8 7 5 34 34 H 1.08995 * 109.47576 * 338.67548 * 8 7 5 35 35 H 1.09007 * 109.46488 * 299.99536 * 9 8 7 36 36 H 1.09000 * 109.47598 * 59.99619 * 9 8 7 37 37 H 0.96999 * 119.99351 * 359.97438 * 10 9 8 38 38 H 0.96994 * 119.99658 * 180.02562 * 14 13 11 39 39 H 1.09000 * 109.47033 * 204.07195 * 19 7 5 40 40 H 1.08994 * 109.46653 * 324.07156 * 19 7 5 41 41 H 1.07998 * 119.99641 * 359.97438 * 21 20 19 42 42 H 1.07994 * 119.99650 * 180.25302 * 22 21 20 43 43 H 1.07995 * 120.00157 * 179.77341 * 23 22 21 44 44 H 1.08002 * 120.00470 * 179.97438 * 24 23 22 45 45 H 1.08003 * 119.99721 * 180.02562 * 25 24 23 46 46 H 1.08001 * 120.17298 * 180.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2001 1.1996 0.0000 4 6 3.5998 1.1459 -0.0006 5 6 4.4141 2.3833 0.0000 6 8 3.9836 3.3942 -0.5191 7 7 5.6324 2.3880 0.5761 8 6 6.2098 1.1390 1.0788 9 6 7.1906 0.5789 0.0466 10 7 7.7685 -0.6699 0.5494 11 6 8.6791 -1.3569 -0.2082 12 1 8.9709 -0.9783 -1.1766 13 6 9.2263 -2.5404 0.2680 14 7 8.8702 -3.0020 1.4481 15 14 10.4678 -3.4778 -0.7658 16 1 11.6486 -2.6151 -1.0245 17 1 10.8973 -4.6987 -0.0375 18 1 9.8452 -3.8647 -2.0573 19 6 6.3794 3.6423 0.6999 20 6 5.9288 4.3753 1.9370 21 6 4.9584 5.3555 1.8448 22 6 4.5417 6.0246 2.9805 23 6 5.1024 5.7204 4.2068 24 6 6.0769 4.7442 4.2982 25 6 6.4899 4.0715 3.1634 26 6 4.2017 -0.1155 -0.0016 27 7 3.4483 -1.1981 -0.0026 28 7 2.1667 -1.1420 -0.0021 29 1 -0.3634 -0.0003 1.0276 30 1 -0.3633 0.8902 -0.5134 31 1 -0.3634 -0.8898 -0.5142 32 1 1.6783 2.1452 0.0004 33 1 6.7369 1.3324 2.0131 34 1 5.4139 0.4152 1.2537 35 1 6.6635 0.3854 -0.8877 36 1 7.9866 1.3026 -0.1284 37 1 7.5061 -1.0100 1.4191 38 1 9.2528 -3.8288 1.7810 39 1 7.4449 3.4248 0.7743 40 1 6.1955 4.2626 -0.1772 41 1 4.5235 5.5962 0.8860 42 1 3.7806 6.7874 2.9090 43 1 4.7795 6.2456 5.0934 44 1 6.5153 4.5068 5.2563 45 1 7.2509 3.3085 3.2349 46 1 5.2781 -0.2034 -0.0017 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717004843.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:52 Heat of formation + Delta-G solvation = 74.552897 kcal Electronic energy + Delta-G solvation = -29203.825535 eV Core-core repulsion = 25287.864709 eV Total energy + Delta-G solvation = -3915.960826 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.66234 -41.09785 -39.79986 -38.06089 -36.11154 -35.08944 -34.70270 -33.42669 -32.39064 -31.78434 -29.86588 -29.09978 -27.97627 -25.96257 -25.66863 -24.57540 -23.59551 -23.19625 -22.48388 -20.77074 -19.54553 -19.25741 -18.14669 -17.98316 -17.77783 -17.07582 -16.94833 -16.49184 -16.22423 -16.00352 -15.82162 -15.56020 -15.39335 -15.12590 -14.94717 -14.51559 -14.29068 -14.13919 -14.05165 -13.83335 -13.48567 -13.25462 -13.16348 -13.06084 -12.89270 -12.80392 -12.56281 -12.21073 -12.13441 -11.90552 -11.88628 -11.82564 -11.69967 -11.35623 -10.98137 -10.79387 -10.67827 -9.99562 -9.82237 -9.72266 -9.04600 -7.94271 -5.24682 -0.80099 -0.29190 0.31410 0.50020 1.40887 1.49695 1.52154 1.57594 1.67418 2.35422 2.56607 2.84738 2.90706 2.98482 3.25049 3.38465 3.41409 3.70943 3.75369 3.77376 3.88248 4.01701 4.09116 4.13047 4.15510 4.21013 4.29079 4.33501 4.41992 4.56531 4.58048 4.69282 4.74563 4.74825 4.80076 4.84679 4.96766 5.01894 5.08426 5.16127 5.23614 5.26021 5.51295 5.56345 5.61433 5.65044 6.00869 6.10232 6.26124 6.72888 7.34536 7.52860 8.02396 8.27118 9.28090 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007593 B = 0.004010 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3686.915852 B = 6980.214613 C = 9751.710439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.065 3.935 3 C -0.052 4.052 4 C -0.140 4.140 5 C 0.571 3.429 6 O -0.540 6.540 7 N -0.581 5.581 8 C 0.081 3.919 9 C 0.135 3.865 10 N -0.737 5.737 11 C -0.248 4.248 12 H 0.076 0.924 13 C -0.064 4.064 14 N -0.962 5.962 15 Si 0.968 3.032 16 H -0.276 1.276 17 H -0.296 1.296 18 H -0.282 1.282 19 C 0.153 3.847 20 C -0.118 4.118 21 C -0.108 4.108 22 C -0.131 4.131 23 C -0.119 4.119 24 C -0.131 4.131 25 C -0.115 4.115 26 C 0.033 3.967 27 N -0.267 5.267 28 N -0.260 5.260 29 H 0.103 0.897 30 H 0.109 0.891 31 H 0.086 0.914 32 H 0.187 0.813 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.021 0.979 36 H 0.042 0.958 37 H 0.378 0.622 38 H 0.252 0.748 39 H 0.107 0.893 40 H 0.093 0.907 41 H 0.122 0.878 42 H 0.140 0.860 43 H 0.144 0.856 44 H 0.138 0.862 45 H 0.126 0.874 46 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.479 18.851 3.414 24.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.080 4.080 3 C -0.082 4.082 4 C -0.154 4.154 5 C 0.358 3.642 6 O -0.417 6.417 7 N -0.312 5.312 8 C -0.042 4.042 9 C 0.008 3.992 10 N -0.382 5.382 11 C -0.380 4.380 12 H 0.093 0.907 13 C -0.257 4.257 14 N -0.612 5.612 15 Si 0.797 3.203 16 H -0.202 1.202 17 H -0.222 1.222 18 H -0.208 1.208 19 C 0.032 3.968 20 C -0.119 4.119 21 C -0.127 4.127 22 C -0.148 4.148 23 C -0.137 4.137 24 C -0.149 4.149 25 C -0.133 4.133 26 C -0.132 4.132 27 N -0.106 5.106 28 N -0.103 5.103 29 H 0.121 0.879 30 H 0.127 0.873 31 H 0.105 0.895 32 H 0.204 0.796 33 H 0.118 0.882 34 H 0.113 0.887 35 H 0.038 0.962 36 H 0.060 0.940 37 H 0.211 0.789 38 H 0.061 0.939 39 H 0.125 0.875 40 H 0.112 0.888 41 H 0.140 0.860 42 H 0.158 0.842 43 H 0.162 0.838 44 H 0.156 0.844 45 H 0.144 0.856 46 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -14.623 17.687 2.977 23.142 hybrid contribution 1.124 0.361 -0.177 1.194 sum -13.499 18.048 2.800 22.711 Atomic orbital electron populations 1.20888 0.83556 1.05730 1.05316 1.23639 1.01352 0.89025 0.93999 1.22755 0.92001 1.01672 0.91757 1.21275 0.96326 0.94665 1.03134 1.17946 0.81358 0.86782 0.78112 1.90735 1.71515 1.34236 1.45255 1.47719 1.16562 1.08941 1.57934 1.22447 0.97989 0.85487 0.98290 1.21125 0.94747 0.88359 0.94979 1.42304 1.50698 1.23975 1.21192 1.19471 1.15882 1.02826 0.99807 0.90650 1.25472 1.02709 0.99347 0.98192 1.69783 1.48273 1.23260 1.19872 0.85307 0.79287 0.77859 0.77853 1.20200 1.22196 1.20798 1.20567 0.96510 0.83423 0.96298 1.20190 0.98579 0.97842 0.95265 1.21276 0.96231 0.95798 0.99389 1.21432 1.00522 1.00378 0.92505 1.21505 0.96294 0.97532 0.98381 1.21442 0.97930 0.96632 0.98913 1.21293 1.00014 0.99635 0.92362 1.25880 1.04544 0.89054 0.93700 1.73161 0.99770 1.27908 1.09744 1.72808 1.01934 1.26844 1.08719 0.87889 0.87258 0.89537 0.79562 0.88225 0.88672 0.96181 0.94019 0.78920 0.93914 0.87526 0.88843 0.86042 0.84221 0.83830 0.84371 0.85581 0.78384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.27 10.19 71.24 0.73 -0.54 16 2 C 0.07 1.54 6.86 42.63 0.29 1.83 16 3 C -0.05 -1.20 9.47 22.79 0.22 -0.98 16 4 C -0.14 -3.99 5.61 -19.83 -0.11 -4.11 16 5 C 0.57 16.19 7.45 86.87 0.65 16.83 16 6 O -0.54 -16.36 16.25 -3.76 -0.06 -16.42 16 7 N -0.58 -15.25 2.48 -829.25 -2.06 -17.31 16 8 C 0.08 2.35 4.96 86.38 0.43 2.78 16 9 C 0.14 4.88 5.49 86.38 0.47 5.36 16 10 N -0.74 -34.80 5.59 -343.44 -1.92 -36.73 16 11 C -0.25 -13.30 9.99 84.03 0.84 -12.46 16 12 H 0.08 3.89 7.83 -2.91 -0.02 3.87 16 13 C -0.06 -3.57 5.50 84.86 0.47 -3.11 16 14 N -0.96 -57.24 13.06 21.65 0.28 -56.96 16 15 Si 0.97 45.39 29.55 68.60 2.03 47.41 16 16 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 17 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 18 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 19 C 0.15 3.48 5.54 85.63 0.47 3.96 16 20 C -0.12 -2.61 5.41 -19.87 -0.11 -2.72 16 21 C -0.11 -2.32 9.68 22.27 0.22 -2.10 16 22 C -0.13 -2.34 10.05 22.27 0.22 -2.12 16 23 C -0.12 -1.99 10.05 22.27 0.22 -1.76 16 24 C -0.13 -2.41 10.05 22.27 0.22 -2.19 16 25 C -0.11 -2.41 9.72 22.27 0.22 -2.19 16 26 C 0.03 1.10 8.84 85.05 0.75 1.86 16 27 N -0.27 -9.95 11.49 -56.53 -0.65 -10.60 16 28 N -0.26 -8.41 11.40 -47.69 -0.54 -8.95 16 29 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.11 0.83 8.09 -2.39 -0.02 0.81 16 31 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.19 3.10 8.03 -2.91 -0.02 3.07 16 33 H 0.10 2.69 8.05 -2.38 -0.02 2.67 16 34 H 0.10 2.97 4.01 -2.39 -0.01 2.96 16 35 H 0.02 0.77 7.11 -2.38 -0.02 0.76 16 36 H 0.04 1.46 8.03 -2.39 -0.02 1.44 16 37 H 0.38 18.93 7.67 -92.71 -0.71 18.21 16 38 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 39 H 0.11 2.19 7.89 -2.39 -0.02 2.18 16 40 H 0.09 2.13 7.43 -2.39 -0.02 2.12 16 41 H 0.12 2.67 7.84 -2.91 -0.02 2.65 16 42 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 43 H 0.14 1.64 8.06 -2.91 -0.02 1.61 16 44 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 45 H 0.13 2.52 7.98 -2.91 -0.02 2.50 16 46 H 0.20 7.12 2.75 -2.91 -0.01 7.11 16 Total: -1.00 -70.20 387.47 3.59 -66.62 By element: Atomic # 1 Polarization: 34.29 SS G_CDS: 0.31 Total: 34.60 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: 6.20 Total: -1.66 kcal Atomic # 7 Polarization: -125.66 SS G_CDS: -4.89 Total: -130.55 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: -0.06 Total: -16.42 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.41 kcal Total: -70.20 3.59 -66.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717004843.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.170 kcal (2) G-P(sol) polarization free energy of solvation -70.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds