Wall clock time and date at job start Tue Mar 31 2020 23:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35319 * 126.12394 * 2 1 4 4 C 1.39877 * 107.91897 * 179.97438 * 3 2 1 5 5 N 1.30834 * 108.20056 * 359.73978 * 4 3 2 6 6 N 1.34949 * 126.12951 * 179.97438 * 2 1 3 7 7 C 1.46491 * 126.03866 * 359.97438 * 6 2 1 8 8 C 1.50702 * 109.46957 * 89.99836 * 7 6 2 9 9 O 1.21283 * 120.00262 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99928 * 179.72354 * 8 7 6 11 11 C 1.46499 * 120.00199 * 180.27479 * 10 8 7 12 12 C 1.50694 * 109.47550 * 180.02562 * 11 10 8 13 13 C 1.38260 * 120.02216 * 269.72661 * 12 11 10 14 14 C 1.38145 * 119.96320 * 179.78706 * 13 12 11 15 15 C 1.38440 * 120.10172 * 0.44418 * 14 13 12 16 16 C 1.38073 * 119.93971 * 359.81097 * 15 14 13 17 17 C 1.38150 * 120.01811 * 90.00187 * 12 11 10 18 18 C 1.50772 * 108.86687 * 179.97438 * 16 15 14 19 19 N 1.46639 * 107.70173 * 359.97438 * 18 16 15 20 20 C 1.36935 * 126.56123 * 180.02562 * 19 18 16 21 21 H 1.07996 * 119.99961 * 0.02562 * 20 19 18 22 22 C 1.38814 * 119.99590 * 180.02562 * 20 19 18 23 23 N 1.31618 * 120.00021 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99688 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47378 * 59.99404 * 24 22 20 26 26 H 1.48505 * 109.46814 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.46557 * 299.99171 * 24 22 20 28 28 C 1.46634 * 106.87227 * 0.02562 * 19 18 16 29 29 H 1.09007 * 109.47032 * 270.02314 * 1 2 3 30 30 H 1.08998 * 109.47373 * 30.02692 * 1 2 3 31 31 H 1.09000 * 109.47078 * 150.03154 * 1 2 3 32 32 H 1.08001 * 126.04162 * 359.97438 * 3 2 1 33 33 H 1.08000 * 125.89679 * 179.97438 * 4 3 2 34 34 H 1.09004 * 109.47166 * 330.00101 * 7 6 2 35 35 H 1.08994 * 109.47507 * 209.99808 * 7 6 2 36 36 H 0.97000 * 120.00317 * 0.28382 * 10 8 7 37 37 H 1.08998 * 109.47134 * 300.00670 * 11 10 8 38 38 H 1.09002 * 109.46857 * 59.99862 * 11 10 8 39 39 H 1.07993 * 120.01454 * 0.02562 * 13 12 11 40 40 H 1.07993 * 119.94891 * 180.23472 * 14 13 12 41 41 H 1.08000 * 119.94745 * 359.97438 * 17 12 11 42 42 H 1.09004 * 109.81342 * 119.54677 * 18 16 15 43 43 H 1.08998 * 109.81160 * 240.45343 * 18 16 15 44 44 H 0.97002 * 119.99631 * 180.02562 * 23 22 20 45 45 H 1.08999 * 109.81432 * 119.54853 * 28 19 18 46 46 H 1.09003 * 109.81276 * 240.38564 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3047 1.0930 0.0000 4 6 3.6334 0.6560 0.0006 5 7 3.6333 -0.6523 0.0066 6 7 2.3026 -1.0900 0.0005 7 6 1.8540 -2.4845 0.0016 8 6 1.6997 -2.9637 -1.4188 9 8 1.9411 -2.2142 -2.3413 10 7 1.2992 -4.2270 -1.6641 11 6 1.1549 -4.6947 -3.0449 12 6 0.6981 -6.1307 -3.0438 13 6 1.6292 -7.1528 -3.0453 14 6 1.2091 -8.4688 -3.0398 15 6 -0.1430 -8.7661 -3.0422 16 6 -1.0730 -7.7455 -3.0460 17 6 -0.6513 -6.4267 -3.0470 18 6 -2.4559 -8.3460 -3.0484 19 7 -2.3085 -9.8049 -3.0465 20 6 -3.3208 -10.7271 -3.0483 21 1 -4.3499 -10.3993 -3.0518 22 6 -3.0243 -12.0832 -3.0455 23 7 -1.7702 -12.4826 -3.0416 24 14 -4.4053 -13.3411 -3.0486 25 1 -5.2385 -13.1585 -4.2641 26 1 -3.8283 -14.7095 -3.0442 27 1 -5.2466 -13.1554 -1.8391 28 6 -0.8696 -10.0873 -3.0423 29 1 -0.3633 0.0004 1.0277 30 1 -0.3634 0.8897 -0.5142 31 1 -0.3633 -0.8903 -0.5133 32 1 1.9739 2.1211 -0.0004 33 1 4.5083 1.2893 0.0004 34 1 0.8957 -2.5575 0.5159 35 1 2.5901 -3.1026 0.5156 36 1 1.1063 -4.8265 -0.9263 37 1 0.4181 -4.0798 -3.5616 38 1 2.1144 -4.6186 -3.5563 39 1 2.6842 -6.9224 -3.0468 40 1 1.9365 -9.2670 -3.0372 41 1 -1.3785 -5.6282 -3.0499 42 1 -2.9984 -8.0279 -2.1581 43 1 -2.9940 -8.0306 -3.9424 44 1 -1.5631 -13.4302 -3.0401 45 1 -0.6069 -10.6537 -2.1489 46 1 -0.6023 -10.6567 -3.9325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717270798.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:24 Heat of formation + Delta-G solvation = 103.189403 kcal Electronic energy + Delta-G solvation = -27693.286997 eV Core-core repulsion = 23778.567943 eV Total energy + Delta-G solvation = -3914.719054 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.56302 -40.06568 -39.41194 -36.47492 -34.66219 -33.79712 -32.43754 -32.25403 -31.27765 -29.88749 -28.35122 -27.25103 -26.99168 -25.96103 -24.42668 -22.12362 -21.63755 -21.11171 -20.49802 -20.34151 -19.78571 -17.78987 -17.18376 -17.08446 -16.02316 -15.92598 -15.55567 -15.24021 -14.92593 -14.54348 -14.40516 -14.35477 -14.22038 -14.07281 -13.75693 -13.35577 -13.25296 -13.09455 -13.02840 -12.85315 -12.36656 -12.27759 -12.02670 -11.91975 -11.75077 -11.62281 -11.13374 -10.87257 -10.84890 -10.56879 -10.50575 -10.30028 -10.21120 -9.85302 -9.48237 -9.37604 -9.01467 -8.74337 -8.50190 -8.09631 -6.92117 -5.87289 -3.20860 1.39645 1.61962 1.66210 2.09103 2.22003 2.64079 3.03694 3.33995 3.37968 3.39497 4.03039 4.15397 4.30987 4.35402 4.37784 4.59604 4.63632 4.72743 4.86443 4.89734 5.10008 5.16928 5.23111 5.37590 5.40233 5.40952 5.43837 5.49793 5.50271 5.56373 5.77599 5.89160 5.94396 6.02573 6.07431 6.40936 6.41673 6.46183 6.48445 6.66736 6.68956 6.70497 6.97563 7.15377 7.25875 7.27211 7.45716 7.47475 7.62551 7.83685 8.07230 9.05317 9.65220 10.31860 11.26735 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.027939 B = 0.001787 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.957294 B =15663.975119 C =16180.357950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.094 3.906 3 C -0.276 4.276 4 C 0.050 3.950 5 N -0.290 5.290 6 N -0.357 5.357 7 C 0.113 3.887 8 C 0.494 3.506 9 O -0.523 6.523 10 N -0.719 5.719 11 C 0.172 3.828 12 C -0.134 4.134 13 C -0.102 4.102 14 C -0.112 4.112 15 C -0.079 4.079 16 C -0.107 4.107 17 C -0.083 4.083 18 C 0.176 3.824 19 N -0.600 5.600 20 C -0.228 4.228 21 H 0.083 0.917 22 C -0.006 4.006 23 N -0.923 5.923 24 Si 0.919 3.081 25 H -0.283 1.283 26 H -0.289 1.289 27 H -0.283 1.283 28 C 0.205 3.795 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.147 0.853 33 H 0.183 0.817 34 H 0.122 0.878 35 H 0.126 0.874 36 H 0.405 0.595 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.117 0.883 42 H 0.036 0.964 43 H 0.037 0.963 44 H 0.256 0.744 45 H 0.065 0.935 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.294 22.255 7.319 24.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.033 4.033 3 C -0.305 4.305 4 C -0.137 4.137 5 N -0.110 5.110 6 N -0.139 5.139 7 C -0.013 4.013 8 C 0.277 3.723 9 O -0.398 6.398 10 N -0.372 5.372 11 C 0.050 3.950 12 C -0.135 4.135 13 C -0.121 4.121 14 C -0.130 4.130 15 C -0.080 4.080 16 C -0.107 4.107 17 C -0.102 4.102 18 C 0.050 3.950 19 N -0.327 5.327 20 C -0.356 4.356 21 H 0.101 0.899 22 C -0.203 4.203 23 N -0.570 5.570 24 Si 0.749 3.251 25 H -0.210 1.210 26 H -0.215 1.215 27 H -0.210 1.210 28 C 0.080 3.920 29 H 0.100 0.900 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.164 0.836 33 H 0.200 0.800 34 H 0.140 0.860 35 H 0.144 0.856 36 H 0.239 0.761 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.135 0.865 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.066 0.934 45 H 0.083 0.917 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.105 21.353 6.635 23.784 hybrid contribution -1.157 -0.360 0.228 1.233 sum 6.948 20.993 6.863 23.153 Atomic orbital electron populations 1.20473 0.87400 1.04192 1.03202 1.21082 0.94655 0.87228 1.00292 1.21206 0.92356 0.98851 1.18055 1.23827 0.98170 0.92132 0.99538 1.77378 0.96101 1.13248 1.24257 1.47913 1.04171 1.04333 1.57533 1.21443 1.03506 0.80520 0.95833 1.20810 0.77697 0.82390 0.91367 1.90781 1.48685 1.54745 1.45556 1.46117 1.68846 1.12594 1.09686 1.20115 1.01644 0.91090 0.82200 1.19429 0.93414 0.93722 1.06888 1.20832 0.98641 0.92175 1.00454 1.20509 0.94616 0.96121 1.01790 1.21568 0.93351 0.98921 0.94177 1.20735 0.97433 0.92991 0.99563 1.20293 0.94531 0.95052 1.00342 1.19706 0.90701 0.85925 0.98684 1.43943 1.01946 0.99049 1.87738 1.18930 0.86316 0.85582 1.44731 0.89883 1.24843 0.96800 0.96924 1.01725 1.69908 1.15914 1.14754 1.56422 0.86096 0.80631 0.80399 0.78020 1.20973 1.21456 1.20994 1.19753 0.82554 0.87764 1.01894 0.90037 0.89406 0.91246 0.83558 0.80009 0.85977 0.85598 0.76054 0.90745 0.90732 0.86302 0.86055 0.86547 0.94610 0.94579 0.93366 0.91736 0.91722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.58 9.90 36.00 0.36 -0.23 16 2 C 0.09 0.90 6.93 -82.27 -0.57 0.33 16 3 C -0.28 -2.59 10.72 -40.01 -0.43 -3.02 16 4 C 0.05 0.51 12.03 -17.36 -0.21 0.30 16 5 N -0.29 -3.63 12.58 30.63 0.39 -3.24 16 6 N -0.36 -3.85 3.10 -58.32 -0.18 -4.03 16 7 C 0.11 0.88 6.55 -5.20 -0.03 0.85 16 8 C 0.49 5.21 7.90 -10.98 -0.09 5.13 16 9 O -0.52 -7.96 16.43 5.55 0.09 -7.86 16 10 N -0.72 -6.53 5.55 -61.47 -0.34 -6.87 16 11 C 0.17 1.87 5.80 -5.20 -0.03 1.84 16 12 C -0.13 -1.68 5.25 -104.65 -0.55 -2.23 16 13 C -0.10 -1.34 9.70 -39.61 -0.38 -1.72 16 14 C -0.11 -1.76 10.05 -39.54 -0.40 -2.16 16 15 C -0.08 -1.51 6.22 -104.57 -0.65 -2.16 16 16 C -0.11 -1.92 6.22 -104.57 -0.65 -2.57 16 17 C -0.08 -1.18 9.70 -39.54 -0.38 -1.57 16 18 C 0.18 3.61 7.25 -5.08 -0.04 3.57 16 19 N -0.60 -15.12 3.41 -175.67 -0.60 -15.72 16 20 C -0.23 -6.18 10.32 -15.06 -0.16 -6.33 16 21 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 22 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 23 N -0.92 -26.19 10.44 55.49 0.58 -25.61 16 24 Si 0.92 21.37 29.55 -169.99 -5.02 16.35 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 28 C 0.20 4.87 5.39 -5.08 -0.03 4.85 16 29 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.44 7.72 -51.93 -0.40 0.04 16 32 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 33 H 0.18 1.23 8.06 -52.49 -0.42 0.81 16 34 H 0.12 0.53 7.66 -51.93 -0.40 0.13 16 35 H 0.13 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.40 2.83 8.46 -40.82 -0.35 2.48 16 37 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 38 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 39 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 40 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 41 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 42 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 45 H 0.06 1.68 7.49 -51.93 -0.39 1.29 16 46 H 0.07 1.70 7.49 -51.93 -0.39 1.31 16 LS Contribution 389.91 15.07 5.88 5.88 Total: -1.00 -34.94 389.91 -10.08 -45.02 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -6.54 Total: 1.48 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -4.33 Total: -5.39 kcal Atomic # 7 Polarization: -55.32 SS G_CDS: -0.16 Total: -55.47 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: 0.09 Total: -7.86 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.94 -10.08 -45.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717270798.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.213 kcal (2) G-P(sol) polarization free energy of solvation -34.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds