Wall clock time and date at job start Tue Mar 31 2020 23:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35319 * 126.12394 * 2 1 4 4 C 1.39877 * 107.91897 * 179.97438 * 3 2 1 5 5 N 1.30834 * 108.20056 * 359.73978 * 4 3 2 6 6 N 1.34949 * 126.12951 * 179.97438 * 2 1 3 7 7 C 1.46491 * 126.03866 * 359.97438 * 6 2 1 8 8 C 1.50702 * 109.46957 * 89.99836 * 7 6 2 9 9 O 1.21283 * 120.00262 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99928 * 179.72354 * 8 7 6 11 11 C 1.46499 * 120.00199 * 180.27479 * 10 8 7 12 12 C 1.50694 * 109.47550 * 180.02562 * 11 10 8 13 13 C 1.38260 * 120.02216 * 269.72661 * 12 11 10 14 14 C 1.38145 * 119.96320 * 179.78706 * 13 12 11 15 15 C 1.38440 * 120.10172 * 0.44418 * 14 13 12 16 16 C 1.38073 * 119.93971 * 359.81097 * 15 14 13 17 17 C 1.38150 * 120.01811 * 90.00187 * 12 11 10 18 18 C 1.50772 * 108.86687 * 179.97438 * 16 15 14 19 19 N 1.46639 * 107.70173 * 359.97438 * 18 16 15 20 20 C 1.36935 * 126.56123 * 180.02562 * 19 18 16 21 21 H 1.07996 * 119.99961 * 0.02562 * 20 19 18 22 22 C 1.38814 * 119.99590 * 180.02562 * 20 19 18 23 23 N 1.31618 * 120.00021 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99688 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47378 * 59.99404 * 24 22 20 26 26 H 1.48505 * 109.46814 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.46557 * 299.99171 * 24 22 20 28 28 C 1.46634 * 106.87227 * 0.02562 * 19 18 16 29 29 H 1.09007 * 109.47032 * 270.02314 * 1 2 3 30 30 H 1.08998 * 109.47373 * 30.02692 * 1 2 3 31 31 H 1.09000 * 109.47078 * 150.03154 * 1 2 3 32 32 H 1.08001 * 126.04162 * 359.97438 * 3 2 1 33 33 H 1.08000 * 125.89679 * 179.97438 * 4 3 2 34 34 H 1.09004 * 109.47166 * 330.00101 * 7 6 2 35 35 H 1.08994 * 109.47507 * 209.99808 * 7 6 2 36 36 H 0.97000 * 120.00317 * 0.28382 * 10 8 7 37 37 H 1.08998 * 109.47134 * 300.00670 * 11 10 8 38 38 H 1.09002 * 109.46857 * 59.99862 * 11 10 8 39 39 H 1.07993 * 120.01454 * 0.02562 * 13 12 11 40 40 H 1.07993 * 119.94891 * 180.23472 * 14 13 12 41 41 H 1.08000 * 119.94745 * 359.97438 * 17 12 11 42 42 H 1.09004 * 109.81342 * 119.54677 * 18 16 15 43 43 H 1.08998 * 109.81160 * 240.45343 * 18 16 15 44 44 H 0.97002 * 119.99631 * 180.02562 * 23 22 20 45 45 H 1.08999 * 109.81432 * 119.54853 * 28 19 18 46 46 H 1.09003 * 109.81276 * 240.38564 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3047 1.0930 0.0000 4 6 3.6334 0.6560 0.0006 5 7 3.6333 -0.6523 0.0066 6 7 2.3026 -1.0900 0.0005 7 6 1.8540 -2.4845 0.0016 8 6 1.6997 -2.9637 -1.4188 9 8 1.9411 -2.2142 -2.3413 10 7 1.2992 -4.2270 -1.6641 11 6 1.1549 -4.6947 -3.0449 12 6 0.6981 -6.1307 -3.0438 13 6 1.6292 -7.1528 -3.0453 14 6 1.2091 -8.4688 -3.0398 15 6 -0.1430 -8.7661 -3.0422 16 6 -1.0730 -7.7455 -3.0460 17 6 -0.6513 -6.4267 -3.0470 18 6 -2.4559 -8.3460 -3.0484 19 7 -2.3085 -9.8049 -3.0465 20 6 -3.3208 -10.7271 -3.0483 21 1 -4.3499 -10.3993 -3.0518 22 6 -3.0243 -12.0832 -3.0455 23 7 -1.7702 -12.4826 -3.0416 24 14 -4.4053 -13.3411 -3.0486 25 1 -5.2385 -13.1585 -4.2641 26 1 -3.8283 -14.7095 -3.0442 27 1 -5.2466 -13.1554 -1.8391 28 6 -0.8696 -10.0873 -3.0423 29 1 -0.3633 0.0004 1.0277 30 1 -0.3634 0.8897 -0.5142 31 1 -0.3633 -0.8903 -0.5133 32 1 1.9739 2.1211 -0.0004 33 1 4.5083 1.2893 0.0004 34 1 0.8957 -2.5575 0.5159 35 1 2.5901 -3.1026 0.5156 36 1 1.1063 -4.8265 -0.9263 37 1 0.4181 -4.0798 -3.5616 38 1 2.1144 -4.6186 -3.5563 39 1 2.6842 -6.9224 -3.0468 40 1 1.9365 -9.2670 -3.0372 41 1 -1.3785 -5.6282 -3.0499 42 1 -2.9984 -8.0279 -2.1581 43 1 -2.9940 -8.0306 -3.9424 44 1 -1.5631 -13.4302 -3.0401 45 1 -0.6069 -10.6537 -2.1489 46 1 -0.6023 -10.6567 -3.9325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717270798.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:23 Heat of formation + Delta-G solvation = 80.573069 kcal Electronic energy + Delta-G solvation = -27694.267715 eV Core-core repulsion = 23778.567943 eV Total energy + Delta-G solvation = -3915.699772 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.24510 -41.22850 -40.46072 -37.90674 -35.81363 -34.50702 -34.08311 -32.97705 -32.49386 -31.44537 -29.47799 -28.23616 -27.80327 -27.53238 -25.74749 -23.61719 -22.40367 -22.11120 -21.83638 -21.48770 -20.56779 -19.00376 -18.57492 -17.89230 -17.22439 -16.83667 -16.70979 -16.26919 -16.11376 -16.06037 -15.90086 -15.46353 -15.12285 -14.94174 -14.69542 -14.53578 -14.47452 -13.80317 -13.74569 -13.53880 -13.50972 -13.47214 -13.31816 -13.07932 -13.06267 -13.01758 -12.88052 -12.66940 -12.16198 -11.99465 -11.83388 -11.65878 -11.55632 -11.39559 -10.91576 -10.21504 -10.20225 -9.73408 -9.61021 -9.41149 -8.85503 -7.93906 -5.30767 0.23419 0.43931 0.86680 1.44705 1.45806 1.47289 1.49741 1.56045 1.95580 2.22810 2.44573 2.82956 3.28581 3.44287 3.53039 3.59680 3.67990 3.78960 3.81149 3.96197 4.12308 4.12542 4.18630 4.30878 4.36470 4.49382 4.62987 4.70635 4.72762 4.76576 4.81766 4.84248 4.86354 4.96256 5.04550 5.16548 5.26654 5.28257 5.28680 5.31600 5.43667 5.51296 5.54835 5.74964 5.85707 6.02686 6.06917 6.09327 6.44176 6.77201 6.99859 7.09210 7.65154 8.32714 9.18990 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.027939 B = 0.001787 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.957294 B =15663.975119 C =16180.357950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.085 3.915 3 C -0.292 4.292 4 C 0.041 3.959 5 N -0.335 5.335 6 N -0.368 5.368 7 C 0.110 3.890 8 C 0.498 3.502 9 O -0.573 6.573 10 N -0.707 5.707 11 C 0.178 3.822 12 C -0.108 4.108 13 C -0.088 4.088 14 C -0.111 4.111 15 C -0.111 4.111 16 C -0.116 4.116 17 C -0.072 4.072 18 C 0.171 3.829 19 N -0.624 5.624 20 C -0.246 4.246 21 H 0.091 0.909 22 C -0.065 4.065 23 N -0.953 5.953 24 Si 0.988 3.012 25 H -0.275 1.275 26 H -0.293 1.293 27 H -0.273 1.273 28 C 0.220 3.780 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.069 0.931 32 H 0.166 0.834 33 H 0.205 0.795 34 H 0.160 0.840 35 H 0.143 0.857 36 H 0.418 0.582 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.152 0.848 40 H 0.129 0.871 41 H 0.144 0.856 42 H 0.045 0.955 43 H 0.040 0.960 44 H 0.251 0.749 45 H 0.025 0.975 46 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.982 24.728 8.180 26.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.042 4.042 3 C -0.320 4.320 4 C -0.145 4.145 5 N -0.156 5.156 6 N -0.151 5.151 7 C -0.015 4.015 8 C 0.284 3.716 9 O -0.451 6.451 10 N -0.360 5.360 11 C 0.055 3.945 12 C -0.109 4.109 13 C -0.107 4.107 14 C -0.130 4.130 15 C -0.112 4.112 16 C -0.117 4.117 17 C -0.091 4.091 18 C 0.046 3.954 19 N -0.351 5.351 20 C -0.373 4.373 21 H 0.109 0.891 22 C -0.258 4.258 23 N -0.601 5.601 24 Si 0.814 3.186 25 H -0.201 1.201 26 H -0.219 1.219 27 H -0.199 1.199 28 C 0.095 3.905 29 H 0.121 0.879 30 H 0.114 0.886 31 H 0.088 0.912 32 H 0.184 0.816 33 H 0.221 0.779 34 H 0.178 0.822 35 H 0.161 0.839 36 H 0.255 0.745 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.170 0.830 40 H 0.147 0.853 41 H 0.161 0.839 42 H 0.063 0.937 43 H 0.058 0.942 44 H 0.060 0.940 45 H 0.043 0.957 46 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 7.777 23.837 7.521 26.178 hybrid contribution -1.010 -0.987 -0.045 1.413 sum 6.767 22.850 7.477 24.977 Atomic orbital electron populations 1.20584 0.85083 1.04616 1.04705 1.21716 0.96217 0.87076 0.99191 1.21591 0.92167 1.00037 1.18233 1.24336 0.99560 0.91953 0.98612 1.77288 0.97718 1.14440 1.26163 1.48148 1.03799 1.05467 1.57644 1.21737 1.05899 0.79654 0.94194 1.21239 0.76407 0.81999 0.91994 1.90767 1.51008 1.56092 1.47253 1.45936 1.68136 1.12504 1.09418 1.19993 1.01740 0.89532 0.83258 1.19586 0.92563 0.94640 1.04073 1.21142 1.00452 0.90733 0.98336 1.20670 0.93160 0.97874 1.01271 1.21188 0.95071 0.96590 0.98319 1.20585 0.95403 0.94274 1.01406 1.20497 0.95875 0.93809 0.98926 1.19813 0.92886 0.83649 0.99005 1.44246 1.02168 1.01086 1.87584 1.19370 0.87331 0.86488 1.44155 0.89107 1.25765 0.99176 0.98924 1.01912 1.70149 1.17874 1.14487 1.57560 0.85025 0.77782 0.77311 0.78433 1.20080 1.21941 1.19908 1.19281 0.82900 0.89978 0.98310 0.87872 0.88556 0.91222 0.81638 0.77859 0.82226 0.83938 0.74470 0.90495 0.90627 0.83045 0.85298 0.83863 0.93714 0.94192 0.94038 0.95712 0.96006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.87 9.90 71.23 0.71 -0.16 16 2 C 0.08 1.46 6.93 41.40 0.29 1.75 16 3 C -0.29 -5.04 10.72 21.99 0.24 -4.80 16 4 C 0.04 0.80 12.03 85.24 1.03 1.82 16 5 N -0.34 -8.09 12.58 -57.02 -0.72 -8.81 16 6 N -0.37 -7.25 3.10 -338.42 -1.05 -8.30 16 7 C 0.11 1.39 6.55 85.64 0.56 1.95 16 8 C 0.50 9.12 7.90 87.66 0.69 9.81 16 9 O -0.57 -16.41 16.43 -3.04 -0.05 -16.46 16 10 N -0.71 -10.16 5.55 -466.79 -2.59 -12.75 16 11 C 0.18 3.17 5.80 85.63 0.50 3.67 16 12 C -0.11 -2.30 5.25 -19.88 -0.10 -2.41 16 13 C -0.09 -2.01 9.70 22.25 0.22 -1.80 16 14 C -0.11 -3.39 10.05 22.30 0.22 -3.16 16 15 C -0.11 -4.31 6.22 -19.83 -0.12 -4.44 16 16 C -0.12 -4.08 6.22 -19.83 -0.12 -4.21 16 17 C -0.07 -1.83 9.70 22.30 0.22 -1.62 16 18 C 0.17 7.09 7.25 85.63 0.62 7.71 16 19 N -0.62 -32.75 3.41 -709.70 -2.42 -35.17 16 20 C -0.25 -13.71 10.32 84.03 0.87 -12.84 16 21 H 0.09 4.75 7.83 -2.91 -0.02 4.73 16 22 C -0.06 -3.64 5.49 84.86 0.47 -3.18 16 23 N -0.95 -56.93 10.44 21.65 0.23 -56.70 16 24 Si 0.99 44.91 29.55 68.60 2.03 46.94 16 25 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 26 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 27 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 28 C 0.22 11.19 5.39 85.63 0.46 11.65 16 29 H 0.10 0.53 8.14 -2.38 -0.02 0.51 16 30 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 0.66 7.72 -2.39 -0.02 0.65 16 32 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 33 H 0.20 2.57 8.06 -2.91 -0.02 2.55 16 34 H 0.16 0.73 7.66 -2.38 -0.02 0.71 16 35 H 0.14 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.42 4.03 8.46 -92.71 -0.78 3.24 16 37 H 0.08 1.43 8.08 -2.39 -0.02 1.41 16 38 H 0.08 1.43 8.08 -2.39 -0.02 1.41 16 39 H 0.15 2.57 8.06 -2.91 -0.02 2.54 16 40 H 0.13 3.64 8.06 -2.91 -0.02 3.62 16 41 H 0.14 2.90 8.06 -2.91 -0.02 2.87 16 42 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 45 H 0.02 1.41 7.49 -2.39 -0.02 1.39 16 46 H 0.02 1.25 7.49 -2.39 -0.02 1.24 16 Total: -1.00 -81.16 389.91 2.37 -78.79 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: 0.22 Total: 12.71 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: 6.72 Total: -0.24 kcal Atomic # 7 Polarization: -115.18 SS G_CDS: -6.55 Total: -121.73 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -0.05 Total: -16.46 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -81.16 2.37 -78.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717270798.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.361 kcal (2) G-P(sol) polarization free energy of solvation -81.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds