Wall clock time and date at job start Tue Mar 31 2020 23:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46493 * 109.46388 * 2 1 4 4 C 1.36934 * 120.00239 * 59.99623 * 3 2 1 5 5 H 1.08001 * 119.99618 * 0.02562 * 4 3 2 6 6 C 1.38815 * 120.00270 * 180.02562 * 4 3 2 7 7 N 1.31620 * 119.99973 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99990 * 180.02562 * 6 4 3 9 9 H 1.48491 * 109.47154 * 269.99715 * 8 6 4 10 10 H 1.48502 * 109.47278 * 29.99904 * 8 6 4 11 11 H 1.48500 * 109.47173 * 149.99616 * 8 6 4 12 12 C 1.53041 * 109.45626 * 119.97190 * 2 1 3 13 13 C 1.53171 * 109.32680 * 181.38366 * 12 2 1 14 14 N 1.46928 * 108.76675 * 305.35498 * 13 12 2 15 15 C 1.34770 * 120.63384 * 233.58476 * 14 13 12 16 16 O 1.21549 * 120.00331 * 174.18376 * 15 14 13 17 17 C 1.47873 * 119.99828 * 354.18906 * 15 14 13 18 18 C 1.40628 * 120.26323 * 138.60895 * 17 15 14 19 19 N 1.30851 * 121.65769 * 179.73671 * 18 17 15 20 20 C 1.33582 * 121.58773 * 0.54501 * 19 18 17 21 21 C 1.40643 * 121.63655 * 179.72656 * 20 19 18 22 22 N 1.31147 * 120.04237 * 180.02562 * 21 20 19 23 23 C 1.32497 * 122.89151 * 359.97438 * 22 21 20 24 24 C 1.36318 * 121.71207 * 359.97438 * 23 22 21 25 25 C 1.40605 * 118.64781 * 0.02562 * 24 23 22 26 26 C 1.38989 * 120.25651 * 318.88159 * 17 15 14 27 27 C 1.46934 * 118.73834 * 53.60869 * 14 13 12 28 28 C 1.53043 * 109.46071 * 240.02328 * 2 1 3 29 29 H 1.09000 * 109.46881 * 60.00128 * 1 2 3 30 30 H 1.09001 * 109.47518 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47187 * 300.00539 * 1 2 3 32 32 H 0.97008 * 119.99919 * 240.00526 * 3 2 1 33 33 H 0.97003 * 119.99545 * 0.02562 * 7 6 4 34 34 H 1.08998 * 109.49986 * 301.32195 * 12 2 1 35 35 H 1.09001 * 109.49783 * 61.42285 * 12 2 1 36 36 H 1.08997 * 109.58911 * 185.57298 * 13 12 2 37 37 H 1.08993 * 109.70858 * 65.20746 * 13 12 2 38 38 H 1.08005 * 119.16657 * 0.02562 * 18 17 15 39 39 H 1.08000 * 119.97708 * 0.02562 * 21 20 19 40 40 H 1.07994 * 119.14363 * 179.97438 * 23 22 21 41 41 H 1.07993 * 120.67329 * 180.02562 * 24 23 22 42 42 H 1.07998 * 121.11394 * 359.96280 * 26 17 15 43 43 H 1.09003 * 109.58834 * 186.60236 * 27 14 13 44 44 H 1.09003 * 109.58402 * 66.17863 * 27 14 13 45 45 H 1.09001 * 109.49895 * 298.58889 * 28 2 1 46 46 H 1.09008 * 109.49506 * 58.64675 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 1.6872 2.2244 1.0269 5 1 1.0666 1.8710 1.8371 6 6 2.1493 3.5334 1.0267 7 7 2.9060 3.9639 0.0396 8 14 1.6984 4.6833 2.4280 9 1 0.4352 5.3917 2.1000 10 1 1.5157 3.8970 3.6744 11 1 2.7859 5.6755 2.6236 12 6 2.0398 -0.7209 1.2500 13 6 3.5711 -0.6890 1.2646 14 7 4.0676 -1.2495 0.0004 15 6 4.9615 -2.2580 0.0005 16 8 5.2848 -2.7838 -1.0466 17 6 5.5491 -2.7251 1.2746 18 6 5.7217 -4.1001 1.5136 19 7 6.2432 -4.5432 2.6288 20 6 6.6278 -3.7111 3.6005 21 6 7.1833 -4.1866 4.8019 22 7 7.5499 -3.3415 5.7355 23 6 7.4236 -2.0288 5.6076 24 6 6.8984 -1.4657 4.4827 25 6 6.4826 -2.3093 3.4376 26 6 5.9298 -1.8086 2.2478 27 6 3.5714 -0.6892 -1.2640 28 6 2.0399 -0.7210 -1.2500 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 2.5758 1.6986 -0.7276 33 1 3.1404 3.3666 -0.6879 34 1 1.6573 -0.2208 2.1398 35 1 1.6975 -1.7557 1.2382 36 1 3.9411 -1.2850 2.0988 37 1 3.9163 0.3395 1.3688 38 1 5.4204 -4.8080 0.7555 39 1 7.3081 -5.2482 4.9558 40 1 7.7452 -1.3883 6.4154 41 1 6.8036 -0.3934 4.3961 42 1 5.8057 -0.7470 2.0936 43 1 3.9416 -1.2852 -2.0981 44 1 3.9146 0.3403 -1.3671 45 1 1.6975 -1.7558 -1.2382 46 1 1.6570 -0.2212 -2.1398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717299926.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:46 Heat of formation + Delta-G solvation = 53.623126 kcal Electronic energy + Delta-G solvation = -29908.262664 eV Core-core repulsion = 25991.394255 eV Total energy + Delta-G solvation = -3916.868409 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.60940 -40.20158 -38.42161 -37.68190 -34.98416 -34.06000 -32.75225 -32.01417 -30.96894 -30.48000 -28.87696 -27.92447 -25.74749 -24.87487 -23.85695 -23.36832 -22.84936 -22.64283 -20.56300 -19.10703 -18.52412 -17.81920 -17.46053 -17.07827 -16.63877 -15.97220 -15.42529 -15.31316 -15.13647 -14.72539 -14.49778 -14.37655 -13.99416 -13.77917 -13.68281 -13.53239 -13.36719 -13.11360 -12.87854 -12.72135 -12.65092 -12.34045 -11.70839 -11.50691 -11.39178 -11.16602 -10.93601 -10.86389 -10.63118 -10.41274 -10.30650 -10.10540 -10.09328 -9.96303 -9.68375 -9.48512 -9.19470 -9.05603 -8.74945 -8.47804 -7.14181 -6.18635 -3.20095 -0.22695 0.23153 1.44503 2.34098 2.82602 3.03011 3.43447 3.46939 3.60710 3.72890 3.80138 4.03170 4.12477 4.21291 4.39962 4.40857 4.56309 4.67103 4.95688 5.01485 5.11651 5.14061 5.18572 5.25483 5.35651 5.38403 5.43655 5.56008 5.58106 5.61475 5.70788 5.83856 5.84663 5.94276 5.99196 6.06205 6.20374 6.22244 6.24507 6.31844 6.39300 6.52773 6.64529 6.81895 6.90317 7.32821 7.44274 7.61412 7.72402 8.05853 8.65646 9.11418 9.98145 10.13762 11.28869 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010841 B = 0.003774 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2582.100425 B = 7416.753777 C = 9151.340547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.203 3.797 3 N -0.728 5.728 4 C -0.325 4.325 5 H 0.065 0.935 6 C -0.042 4.042 7 N -0.943 5.943 8 Si 1.076 2.924 9 H -0.296 1.296 10 H -0.295 1.295 11 H -0.289 1.289 12 C -0.133 4.133 13 C 0.107 3.893 14 N -0.589 5.589 15 C 0.559 3.441 16 O -0.539 6.539 17 C -0.159 4.159 18 C 0.179 3.821 19 N -0.459 5.459 20 C 0.080 3.920 21 C 0.160 3.840 22 N -0.469 5.469 23 C 0.071 3.929 24 C -0.131 4.131 25 C -0.084 4.084 26 C -0.019 4.019 27 C 0.117 3.883 28 C -0.131 4.131 29 H 0.049 0.951 30 H 0.036 0.964 31 H 0.057 0.943 32 H 0.366 0.634 33 H 0.255 0.745 34 H 0.077 0.923 35 H 0.050 0.950 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.172 0.828 39 H 0.173 0.827 40 H 0.161 0.839 41 H 0.147 0.853 42 H 0.157 0.843 43 H 0.088 0.912 44 H 0.076 0.924 45 H 0.065 0.935 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.923 -13.663 5.972 15.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.112 3.888 3 N -0.372 5.372 4 C -0.456 4.456 5 H 0.083 0.917 6 C -0.240 4.240 7 N -0.589 5.589 8 Si 0.908 3.092 9 H -0.224 1.224 10 H -0.222 1.222 11 H -0.215 1.215 12 C -0.174 4.174 13 C -0.015 4.015 14 N -0.321 5.321 15 C 0.346 3.654 16 O -0.418 6.418 17 C -0.165 4.165 18 C 0.005 3.995 19 N -0.168 5.168 20 C -0.044 4.044 21 C -0.013 4.013 22 N -0.178 5.178 23 C -0.072 4.072 24 C -0.151 4.151 25 C -0.091 4.091 26 C -0.045 4.045 27 C -0.005 4.005 28 C -0.170 4.170 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.201 0.799 33 H 0.066 0.934 34 H 0.096 0.904 35 H 0.068 0.932 36 H 0.089 0.911 37 H 0.110 0.890 38 H 0.189 0.811 39 H 0.190 0.810 40 H 0.178 0.822 41 H 0.165 0.835 42 H 0.174 0.826 43 H 0.106 0.894 44 H 0.094 0.906 45 H 0.084 0.916 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.672 -13.477 7.277 16.333 hybrid contribution -0.740 0.001 -1.650 1.808 sum 4.932 -13.476 5.627 15.414 Atomic orbital electron populations 1.22193 0.97354 0.99082 1.02213 1.19460 0.92287 0.85700 0.91383 1.42528 1.61206 1.06675 1.26810 1.19937 1.29735 0.94447 1.01461 0.91697 1.25641 0.99023 0.95893 1.03468 1.70869 1.38831 1.37977 1.11206 0.83270 0.75966 0.75740 0.74235 1.22401 1.22225 1.21505 1.22284 0.94181 0.99313 1.01576 1.22059 0.95827 0.99835 0.83795 1.48049 1.41456 1.33811 1.08764 1.18013 0.79632 0.79875 0.87903 1.90780 1.61898 1.56690 1.32415 1.21128 1.03470 0.95904 0.96038 1.23077 0.90528 0.92411 0.93525 1.67950 1.10465 1.37587 1.00773 1.20060 0.98831 0.89573 0.95886 1.23117 0.91590 1.00276 0.86331 1.67452 1.15232 1.04417 1.30682 1.22306 0.96688 0.90954 0.97218 1.22057 0.98377 1.01277 0.93413 1.18907 0.99971 0.94488 0.95775 1.22176 0.91124 1.01040 0.90194 1.21627 0.94387 0.99161 0.85300 1.22117 0.94668 1.00761 0.99430 0.93186 0.94485 0.92424 0.79926 0.93403 0.90418 0.93173 0.91094 0.89027 0.81084 0.80954 0.82182 0.83504 0.82586 0.89399 0.90619 0.91584 0.90658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 8.44 37.16 0.31 -2.21 16 2 C 0.20 3.49 0.74 -131.78 -0.10 3.40 16 3 N -0.73 -15.55 4.14 -47.19 -0.20 -15.74 16 4 C -0.32 -7.95 8.68 -15.06 -0.13 -8.08 16 5 H 0.07 1.59 6.70 -52.49 -0.35 1.24 16 6 C -0.04 -1.12 5.50 -17.43 -0.10 -1.21 16 7 N -0.94 -26.94 13.70 55.49 0.76 -26.18 16 8 Si 1.08 24.19 29.92 -169.99 -5.09 19.11 16 9 H -0.30 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.30 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 C -0.13 -2.11 4.70 -26.62 -0.13 -2.24 16 13 C 0.11 1.59 4.68 -3.72 -0.02 1.57 16 14 N -0.59 -8.79 2.97 -173.88 -0.52 -9.30 16 15 C 0.56 8.38 7.32 -12.32 -0.09 8.29 16 16 O -0.54 -9.42 16.37 5.32 0.09 -9.34 16 17 C -0.16 -2.05 5.11 -104.77 -0.54 -2.58 16 18 C 0.18 2.16 10.78 -17.07 -0.18 1.98 16 19 N -0.46 -5.65 10.33 -10.65 -0.11 -5.76 16 20 C 0.08 0.95 6.62 -84.81 -0.56 0.39 16 21 C 0.16 1.69 11.25 -16.94 -0.19 1.50 16 22 N -0.47 -5.11 10.28 -13.11 -0.13 -5.25 16 23 C 0.07 0.67 11.08 -17.96 -0.20 0.47 16 24 C -0.13 -1.26 9.88 -39.38 -0.39 -1.65 16 25 C -0.08 -0.97 5.75 -106.79 -0.61 -1.58 16 26 C -0.02 -0.22 7.30 -38.48 -0.28 -0.50 16 27 C 0.12 1.79 6.17 -3.71 -0.02 1.77 16 28 C -0.13 -1.97 4.96 -26.61 -0.13 -2.10 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 1.05 7.27 -51.93 -0.38 0.68 16 32 H 0.37 8.28 5.29 -40.82 -0.22 8.06 16 33 H 0.25 7.15 6.77 -40.82 -0.28 6.87 16 34 H 0.08 1.33 7.31 -51.93 -0.38 0.95 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.93 4.79 -51.93 -0.25 0.68 16 37 H 0.09 1.59 7.73 -51.93 -0.40 1.19 16 38 H 0.17 1.81 8.06 -52.48 -0.42 1.39 16 39 H 0.17 1.41 8.06 -52.49 -0.42 0.99 16 40 H 0.16 1.07 8.06 -52.49 -0.42 0.65 16 41 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 42 H 0.16 1.74 6.73 -52.49 -0.35 1.38 16 43 H 0.09 1.32 7.00 -51.93 -0.36 0.96 16 44 H 0.08 1.25 6.94 -51.93 -0.36 0.89 16 45 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 46 H 0.07 1.11 8.14 -51.92 -0.42 0.69 16 LS Contribution 367.47 15.07 5.54 5.54 Total: -1.00 -30.41 367.47 -8.94 -39.35 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -5.93 Total: 10.37 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -3.35 Total: -2.79 kcal Atomic # 7 Polarization: -62.04 SS G_CDS: -0.20 Total: -62.24 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.09 Total: -9.34 kcal Atomic # 14 Polarization: 24.19 SS G_CDS: -5.09 Total: 19.11 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.41 -8.94 -39.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717299926.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.973 kcal (2) G-P(sol) polarization free energy of solvation -30.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds