Wall clock time and date at job start Tue Mar 31 2020 23:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46493 * 109.46388 * 2 1 4 4 C 1.36934 * 120.00239 * 59.99623 * 3 2 1 5 5 H 1.08001 * 119.99618 * 0.02562 * 4 3 2 6 6 C 1.38815 * 120.00270 * 180.02562 * 4 3 2 7 7 N 1.31620 * 119.99973 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99990 * 180.02562 * 6 4 3 9 9 H 1.48491 * 109.47154 * 269.99715 * 8 6 4 10 10 H 1.48502 * 109.47278 * 29.99904 * 8 6 4 11 11 H 1.48500 * 109.47173 * 149.99616 * 8 6 4 12 12 C 1.53041 * 109.45626 * 119.97190 * 2 1 3 13 13 C 1.53171 * 109.32680 * 181.38366 * 12 2 1 14 14 N 1.46928 * 108.76675 * 305.35498 * 13 12 2 15 15 C 1.34770 * 120.63384 * 233.58476 * 14 13 12 16 16 O 1.21549 * 120.00331 * 174.18376 * 15 14 13 17 17 C 1.47873 * 119.99828 * 354.18906 * 15 14 13 18 18 C 1.40628 * 120.26323 * 138.60895 * 17 15 14 19 19 N 1.30851 * 121.65769 * 179.73671 * 18 17 15 20 20 C 1.33582 * 121.58773 * 0.54501 * 19 18 17 21 21 C 1.40643 * 121.63655 * 179.72656 * 20 19 18 22 22 N 1.31147 * 120.04237 * 180.02562 * 21 20 19 23 23 C 1.32497 * 122.89151 * 359.97438 * 22 21 20 24 24 C 1.36318 * 121.71207 * 359.97438 * 23 22 21 25 25 C 1.40605 * 118.64781 * 0.02562 * 24 23 22 26 26 C 1.38989 * 120.25651 * 318.88159 * 17 15 14 27 27 C 1.46934 * 118.73834 * 53.60869 * 14 13 12 28 28 C 1.53043 * 109.46071 * 240.02328 * 2 1 3 29 29 H 1.09000 * 109.46881 * 60.00128 * 1 2 3 30 30 H 1.09001 * 109.47518 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47187 * 300.00539 * 1 2 3 32 32 H 0.97008 * 119.99919 * 240.00526 * 3 2 1 33 33 H 0.97003 * 119.99545 * 0.02562 * 7 6 4 34 34 H 1.08998 * 109.49986 * 301.32195 * 12 2 1 35 35 H 1.09001 * 109.49783 * 61.42285 * 12 2 1 36 36 H 1.08997 * 109.58911 * 185.57298 * 13 12 2 37 37 H 1.08993 * 109.70858 * 65.20746 * 13 12 2 38 38 H 1.08005 * 119.16657 * 0.02562 * 18 17 15 39 39 H 1.08000 * 119.97708 * 0.02562 * 21 20 19 40 40 H 1.07994 * 119.14363 * 179.97438 * 23 22 21 41 41 H 1.07993 * 120.67329 * 180.02562 * 24 23 22 42 42 H 1.07998 * 121.11394 * 359.96280 * 26 17 15 43 43 H 1.09003 * 109.58834 * 186.60236 * 27 14 13 44 44 H 1.09003 * 109.58402 * 66.17863 * 27 14 13 45 45 H 1.09001 * 109.49895 * 298.58889 * 28 2 1 46 46 H 1.09008 * 109.49506 * 58.64675 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 1.6872 2.2244 1.0269 5 1 1.0666 1.8710 1.8371 6 6 2.1493 3.5334 1.0267 7 7 2.9060 3.9639 0.0396 8 14 1.6984 4.6833 2.4280 9 1 0.4352 5.3917 2.1000 10 1 1.5157 3.8970 3.6744 11 1 2.7859 5.6755 2.6236 12 6 2.0398 -0.7209 1.2500 13 6 3.5711 -0.6890 1.2646 14 7 4.0676 -1.2495 0.0004 15 6 4.9615 -2.2580 0.0005 16 8 5.2848 -2.7838 -1.0466 17 6 5.5491 -2.7251 1.2746 18 6 5.7217 -4.1001 1.5136 19 7 6.2432 -4.5432 2.6288 20 6 6.6278 -3.7111 3.6005 21 6 7.1833 -4.1866 4.8019 22 7 7.5499 -3.3415 5.7355 23 6 7.4236 -2.0288 5.6076 24 6 6.8984 -1.4657 4.4827 25 6 6.4826 -2.3093 3.4376 26 6 5.9298 -1.8086 2.2478 27 6 3.5714 -0.6892 -1.2640 28 6 2.0399 -0.7210 -1.2500 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 2.5758 1.6986 -0.7276 33 1 3.1404 3.3666 -0.6879 34 1 1.6573 -0.2208 2.1398 35 1 1.6975 -1.7557 1.2382 36 1 3.9411 -1.2850 2.0988 37 1 3.9163 0.3395 1.3688 38 1 5.4204 -4.8080 0.7555 39 1 7.3081 -5.2482 4.9558 40 1 7.7452 -1.3883 6.4154 41 1 6.8036 -0.3934 4.3961 42 1 5.8057 -0.7470 2.0936 43 1 3.9416 -1.2852 -2.0981 44 1 3.9146 0.3403 -1.3671 45 1 1.6975 -1.7558 -1.2382 46 1 1.6570 -0.2212 -2.1398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717299926.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:45 Heat of formation + Delta-G solvation = 35.387214 kcal Electronic energy + Delta-G solvation = -29909.053432 eV Core-core repulsion = 25991.394255 eV Total energy + Delta-G solvation = -3917.659178 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.53056 -41.35489 -39.58904 -38.76081 -36.38680 -35.11729 -34.32751 -33.05490 -32.03262 -31.43308 -30.57298 -29.26205 -26.72746 -25.89998 -25.54372 -24.53774 -24.09556 -23.61590 -21.75015 -20.33349 -19.64676 -18.97942 -18.75178 -18.36254 -17.72005 -17.07225 -16.79842 -16.41028 -16.14669 -15.92476 -15.74857 -15.39941 -15.27951 -15.17746 -15.09565 -14.58027 -14.45308 -14.21871 -14.10607 -13.83548 -13.56826 -13.49674 -13.27324 -12.83931 -12.74187 -12.63739 -12.34937 -12.22053 -12.00763 -11.84924 -11.74552 -11.51372 -11.34568 -11.02990 -10.95920 -10.84662 -10.58584 -10.45856 -9.78774 -9.56365 -8.98784 -8.23573 -5.18107 -1.10712 -0.64540 0.58359 1.31462 1.62317 1.70139 1.71890 1.83605 1.97203 2.76420 2.87113 2.92862 3.10803 3.24173 3.43183 3.48241 3.51853 3.54608 3.66746 3.75961 3.82440 3.91955 4.06943 4.16355 4.18828 4.27236 4.29955 4.42404 4.52566 4.54330 4.59822 4.67956 4.76253 4.78438 4.89615 4.90607 4.94180 4.99546 5.05333 5.13855 5.21446 5.24447 5.44504 5.47118 5.54384 5.77194 6.21122 6.47407 6.62999 6.81233 6.85938 7.21270 8.12384 8.24860 9.27869 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010841 B = 0.003774 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2582.100425 B = 7416.753777 C = 9151.340547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.194 3.806 3 N -0.735 5.735 4 C -0.299 4.299 5 H 0.067 0.933 6 C -0.103 4.103 7 N -0.983 5.983 8 Si 1.116 2.884 9 H -0.296 1.296 10 H -0.272 1.272 11 H -0.301 1.301 12 C -0.129 4.129 13 C 0.117 3.883 14 N -0.588 5.588 15 C 0.564 3.436 16 O -0.566 6.566 17 C -0.170 4.170 18 C 0.176 3.824 19 N -0.464 5.464 20 C 0.066 3.934 21 C 0.157 3.843 22 N -0.480 5.480 23 C 0.071 3.929 24 C -0.132 4.132 25 C -0.095 4.095 26 C -0.013 4.013 27 C 0.120 3.880 28 C -0.122 4.122 29 H 0.039 0.961 30 H 0.066 0.934 31 H 0.040 0.960 32 H 0.358 0.642 33 H 0.244 0.756 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.065 0.935 38 H 0.183 0.817 39 H 0.192 0.808 40 H 0.189 0.811 41 H 0.168 0.832 42 H 0.160 0.840 43 H 0.091 0.909 44 H 0.057 0.943 45 H 0.085 0.915 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.677 -15.036 7.659 17.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.104 3.896 3 N -0.378 5.378 4 C -0.431 4.431 5 H 0.085 0.915 6 C -0.294 4.294 7 N -0.632 5.632 8 Si 0.944 3.056 9 H -0.223 1.223 10 H -0.197 1.197 11 H -0.228 1.228 12 C -0.169 4.169 13 C -0.005 4.005 14 N -0.319 5.319 15 C 0.352 3.648 16 O -0.446 6.446 17 C -0.176 4.176 18 C 0.001 3.999 19 N -0.173 5.173 20 C -0.058 4.058 21 C -0.016 4.016 22 N -0.189 5.189 23 C -0.072 4.072 24 C -0.152 4.152 25 C -0.101 4.101 26 C -0.040 4.040 27 C -0.002 4.002 28 C -0.160 4.160 29 H 0.058 0.942 30 H 0.085 0.915 31 H 0.059 0.941 32 H 0.191 0.809 33 H 0.054 0.946 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.110 0.890 37 H 0.083 0.917 38 H 0.200 0.800 39 H 0.209 0.791 40 H 0.206 0.794 41 H 0.185 0.815 42 H 0.178 0.822 43 H 0.109 0.891 44 H 0.075 0.925 45 H 0.103 0.897 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.397 -14.908 8.989 18.225 hybrid contribution -0.646 0.341 -2.126 2.248 sum 4.751 -14.567 6.863 16.789 Atomic orbital electron populations 1.22123 0.96685 1.00641 1.00855 1.19756 0.92660 0.83901 0.93250 1.42682 1.61092 1.08169 1.25820 1.20157 1.27205 0.94350 1.01395 0.91468 1.26699 0.99785 0.98023 1.04892 1.70966 1.41670 1.38242 1.12335 0.82725 0.75152 0.74417 0.73279 1.22338 1.19675 1.22778 1.22215 0.94596 1.00112 0.99986 1.21907 0.95290 0.98759 0.84513 1.48033 1.41540 1.33814 1.08535 1.18249 0.78984 0.79279 0.88298 1.90763 1.62671 1.57564 1.33627 1.20956 1.04752 0.96508 0.95388 1.23227 0.90533 0.92292 0.93811 1.67967 1.10623 1.37780 1.00898 1.20324 0.99205 0.89904 0.96322 1.23428 0.91119 1.01259 0.85778 1.67527 1.15380 1.05181 1.30816 1.22810 0.95688 0.90817 0.97846 1.22309 0.97831 1.02189 0.92844 1.19073 1.00219 0.94757 0.96095 1.22229 0.90611 1.01036 0.90110 1.21532 0.94700 0.98212 0.85800 1.22041 0.94190 1.01442 0.98360 0.94158 0.91485 0.94121 0.80873 0.94570 0.91582 0.90990 0.88956 0.91708 0.80019 0.79139 0.79382 0.81481 0.82222 0.89065 0.92467 0.89684 0.90460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.61 8.44 71.98 0.61 -4.00 16 2 C 0.19 6.44 0.74 3.63 0.00 6.44 16 3 N -0.73 -31.40 4.14 -303.23 -1.25 -32.66 16 4 C -0.30 -14.59 8.68 84.03 0.73 -13.86 16 5 H 0.07 3.22 6.70 -2.91 -0.02 3.20 16 6 C -0.10 -5.44 5.50 84.86 0.47 -4.97 16 7 N -0.98 -57.43 13.70 21.65 0.30 -57.13 16 8 Si 1.12 48.81 29.92 68.60 2.05 50.87 16 9 H -0.30 -12.76 7.11 99.48 0.71 -12.06 16 10 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 11 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 12 C -0.13 -3.85 4.70 30.66 0.14 -3.71 16 13 C 0.12 3.36 4.68 86.35 0.40 3.76 16 14 N -0.59 -17.04 2.97 -822.33 -2.44 -19.48 16 15 C 0.56 16.42 7.32 86.80 0.64 17.06 16 16 O -0.57 -19.45 16.37 -3.87 -0.06 -19.51 16 17 C -0.17 -4.18 5.11 -19.96 -0.10 -4.28 16 18 C 0.18 4.05 10.78 85.42 0.92 4.97 16 19 N -0.46 -10.80 10.33 -187.61 -1.94 -12.74 16 20 C 0.07 1.46 6.62 40.36 0.27 1.73 16 21 C 0.16 3.03 11.25 85.38 0.96 3.99 16 22 N -0.48 -9.40 10.28 -195.39 -2.01 -11.41 16 23 C 0.07 1.15 11.08 84.14 0.93 2.08 16 24 C -0.13 -2.24 9.88 22.40 0.22 -2.01 16 25 C -0.09 -2.01 5.75 -21.27 -0.12 -2.13 16 26 C -0.01 -0.30 7.30 22.98 0.17 -0.13 16 27 C 0.12 3.62 6.17 86.36 0.53 4.15 16 28 C -0.12 -3.49 4.96 30.67 0.15 -3.34 16 29 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.04 1.42 7.27 -2.39 -0.02 1.40 16 32 H 0.36 16.56 5.29 -92.70 -0.49 16.07 16 33 H 0.24 14.17 6.77 -92.71 -0.63 13.54 16 34 H 0.07 2.14 7.31 -2.39 -0.02 2.13 16 35 H 0.07 1.86 8.14 -2.39 -0.02 1.85 16 36 H 0.09 2.25 4.79 -2.39 -0.01 2.24 16 37 H 0.06 2.24 7.73 -2.39 -0.02 2.22 16 38 H 0.18 3.65 8.06 -2.91 -0.02 3.63 16 39 H 0.19 2.77 8.06 -2.91 -0.02 2.75 16 40 H 0.19 1.89 8.06 -2.91 -0.02 1.86 16 41 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 42 H 0.16 3.39 6.73 -2.91 -0.02 3.37 16 43 H 0.09 2.71 7.00 -2.39 -0.02 2.69 16 44 H 0.06 1.94 6.94 -2.39 -0.02 1.93 16 45 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 46 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 Total: -1.00 -65.22 367.47 2.24 -62.98 By element: Atomic # 1 Polarization: 32.67 SS G_CDS: 0.67 Total: 33.34 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: 6.92 Total: 5.75 kcal Atomic # 7 Polarization: -126.08 SS G_CDS: -7.35 Total: -133.42 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -0.06 Total: -19.51 kcal Atomic # 14 Polarization: 48.81 SS G_CDS: 2.05 Total: 50.87 kcal Total: -65.22 2.24 -62.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717299926.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.367 kcal (2) G-P(sol) polarization free energy of solvation -65.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds