Wall clock time and date at job start Tue Mar 31 2020 23:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53005 * 110.79672 * 2 1 4 4 N 1.46497 * 109.47115 * 56.71044 * 3 2 1 5 5 C 1.36937 * 119.99779 * 179.97438 * 4 3 2 6 6 H 1.08002 * 120.00081 * 359.97438 * 5 4 3 7 7 C 1.38813 * 120.00028 * 180.02562 * 5 4 3 8 8 N 1.31623 * 119.99744 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00293 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47272 * 89.99838 * 9 7 5 11 11 H 1.48500 * 109.47116 * 209.99970 * 9 7 5 12 12 H 1.48497 * 109.46759 * 329.99774 * 9 7 5 13 13 C 1.54618 * 110.73968 * 236.71038 * 2 1 3 14 14 C 1.54004 * 105.04310 * 263.51293 * 13 2 1 15 15 N 1.47486 * 107.08353 * 1.30271 * 14 13 2 16 16 C 1.34779 * 127.02949 * 154.51903 * 15 14 13 17 17 O 1.21547 * 119.99505 * 180.02562 * 16 15 14 18 18 C 1.47903 * 120.00166 * 0.02562 * 16 15 14 19 19 N 1.32378 * 120.63918 * 5.65588 * 18 16 15 20 20 N 1.28085 * 123.18846 * 180.02562 * 19 18 16 21 21 C 1.31790 * 123.49479 * 0.02562 * 20 19 18 22 22 C 1.40407 * 119.13858 * 359.71934 * 21 20 19 23 23 C 1.40233 * 122.73232 * 179.69615 * 22 21 20 24 24 C 1.36253 * 119.36998 * 180.32507 * 23 22 21 25 25 C 1.39385 * 121.07436 * 0.27309 * 24 23 22 26 26 C 1.36362 * 121.08640 * 359.97438 * 25 24 23 27 27 C 1.39836 * 119.42028 * 0.02734 * 26 25 24 28 28 C 1.48114 * 105.93498 * 334.78420 * 15 14 13 29 29 H 1.08999 * 109.46814 * 183.28977 * 1 2 3 30 30 H 1.08995 * 109.46693 * 303.29117 * 1 2 3 31 31 H 1.08997 * 109.46878 * 63.29005 * 1 2 3 32 32 H 1.09006 * 109.46740 * 176.70876 * 3 2 1 33 33 H 1.08998 * 109.47334 * 296.70422 * 3 2 1 34 34 H 0.97001 * 120.00204 * 0.02562 * 4 3 2 35 35 H 0.97001 * 119.99612 * 180.02562 * 8 7 5 36 36 H 1.08995 * 110.32343 * 144.61718 * 13 2 1 37 37 H 1.09000 * 110.41416 * 22.45001 * 13 2 1 38 38 H 1.08999 * 109.90872 * 241.94628 * 14 13 2 39 39 H 1.08999 * 109.91229 * 120.66997 * 14 13 2 40 40 H 1.08001 * 120.43274 * 180.02562 * 21 20 19 41 41 H 1.07999 * 120.31215 * 0.59482 * 23 22 21 42 42 H 1.08000 * 119.46803 * 180.30061 * 24 23 22 43 43 H 1.07998 * 119.45685 * 180.02562 * 25 24 23 44 44 H 1.08004 * 120.29213 * 180.02562 * 26 25 24 45 45 H 1.08996 * 110.66527 * 157.50623 * 28 15 14 46 46 H 1.09003 * 110.66232 * 280.62368 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0733 1.4304 0.0000 4 7 1.5380 2.1560 1.1545 5 6 1.8881 3.4632 1.3640 6 1 2.5591 3.9591 0.6782 7 6 1.3813 4.1507 2.4582 8 7 0.5639 3.5463 3.2942 9 14 1.8582 5.9341 2.7436 10 1 0.8902 6.8223 2.0512 11 1 1.8419 6.2240 4.1999 12 1 3.2217 6.1738 2.2064 13 6 2.0776 -0.7937 -1.2087 14 6 2.3763 -2.2014 -0.6603 15 7 1.9872 -2.2038 0.7623 16 6 1.6222 -3.2696 1.5021 17 8 1.3243 -3.1242 2.6715 18 6 1.5840 -4.6160 0.8911 19 7 2.0114 -4.8072 -0.3472 20 7 2.0002 -5.9508 -0.9240 21 6 1.5632 -7.0521 -0.3470 22 6 1.0858 -6.9898 0.9719 23 6 0.5979 -8.1129 1.6556 24 6 0.1448 -7.9729 2.9329 25 6 0.1534 -6.7318 3.5674 26 6 0.6160 -5.6185 2.9302 27 6 1.0889 -5.7244 1.6185 28 6 2.0733 -0.7945 1.2098 29 1 -0.3633 -1.0260 0.0590 30 1 -0.3632 0.5641 0.8590 31 1 -0.3633 0.4619 -0.9180 32 1 3.1615 1.4057 0.0590 33 1 1.7706 1.9340 -0.9180 34 1 0.9362 1.7104 1.7711 35 1 0.2094 4.0268 4.0587 36 1 2.9910 -0.3313 -1.5828 37 1 1.3293 -0.8462 -1.9995 38 1 3.4403 -2.4184 -0.7545 39 1 1.7937 -2.9437 -1.2059 40 1 1.5767 -7.9914 -0.8800 41 1 0.5856 -9.0803 1.1757 42 1 -0.2267 -8.8376 3.4626 43 1 -0.2115 -6.6508 4.5806 44 1 0.6172 -4.6633 3.4342 45 1 1.4489 -0.6310 2.0880 46 1 3.1077 -0.5187 1.4152 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724230013.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:45 Heat of formation + Delta-G solvation = 70.542163 kcal Electronic energy + Delta-G solvation = -29168.591934 eV Core-core repulsion = 25252.457189 eV Total energy + Delta-G solvation = -3916.134745 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.83059 -39.96840 -38.41125 -38.02027 -34.83998 -33.73159 -32.66465 -32.15576 -30.86426 -30.30403 -29.13567 -27.10507 -26.03623 -25.06406 -24.64065 -23.55253 -22.94323 -21.95463 -20.24619 -18.83938 -18.72783 -18.40943 -17.37963 -16.78606 -16.35530 -16.10913 -15.98527 -15.25768 -14.99639 -14.51628 -14.50707 -14.32993 -14.14454 -13.75042 -13.53116 -13.35621 -12.96286 -12.91936 -12.73513 -12.54886 -12.28118 -12.08256 -11.87968 -11.78324 -11.55680 -11.20460 -10.97931 -10.92055 -10.79868 -10.43711 -10.42382 -10.26841 -10.00751 -9.89865 -9.77488 -9.75524 -9.58543 -8.89002 -8.84884 -8.57784 -6.88729 -5.73019 -3.01674 -0.39271 0.22078 1.23082 2.32956 2.73297 2.87544 3.46121 3.51170 3.52970 3.57701 3.62455 3.96149 4.03774 4.19024 4.32714 4.54302 4.61836 4.65568 4.81420 4.84845 4.87194 5.08433 5.11546 5.23211 5.35678 5.45708 5.51542 5.56349 5.62438 5.73492 5.78821 5.89121 5.92710 5.99877 6.04387 6.07689 6.13184 6.15633 6.18502 6.31810 6.35692 6.43456 6.55482 6.69969 6.80170 6.88362 7.50308 7.73254 7.95753 8.38024 8.45666 9.56974 10.14400 10.48931 11.49729 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019955 B = 0.002526 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.839559 B =11083.646735 C =12170.666655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.079 4.079 3 C 0.169 3.831 4 N -0.731 5.731 5 C -0.239 4.239 6 H 0.070 0.930 7 C -0.014 4.014 8 N -0.932 5.932 9 Si 0.906 3.094 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.282 1.282 13 C -0.126 4.126 14 C 0.103 3.897 15 N -0.590 5.590 16 C 0.589 3.411 17 O -0.527 6.527 18 C 0.078 3.922 19 N -0.226 5.226 20 N -0.268 5.268 21 C 0.100 3.900 22 C -0.086 4.086 23 C -0.099 4.099 24 C -0.094 4.094 25 C -0.102 4.102 26 C -0.088 4.088 27 C -0.047 4.047 28 C 0.118 3.882 29 H 0.042 0.958 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.022 0.978 33 H 0.025 0.975 34 H 0.385 0.615 35 H 0.255 0.745 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.094 0.906 40 H 0.180 0.820 41 H 0.140 0.860 42 H 0.133 0.867 43 H 0.135 0.865 44 H 0.176 0.824 45 H 0.092 0.908 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.011 -27.051 -6.158 27.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.080 4.080 3 C 0.041 3.959 4 N -0.376 5.376 5 C -0.370 4.370 6 H 0.088 0.912 7 C -0.210 4.210 8 N -0.581 5.581 9 Si 0.738 3.262 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.165 4.165 14 C -0.020 4.020 15 N -0.321 5.321 16 C 0.374 3.626 17 O -0.404 6.404 18 C -0.079 4.079 19 N -0.063 5.063 20 N -0.099 5.099 21 C -0.075 4.075 22 C -0.093 4.093 23 C -0.119 4.119 24 C -0.114 4.114 25 C -0.121 4.121 26 C -0.107 4.107 27 C -0.055 4.055 28 C -0.003 4.003 29 H 0.061 0.939 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.040 0.960 33 H 0.042 0.958 34 H 0.220 0.780 35 H 0.065 0.935 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.112 0.888 40 H 0.197 0.803 41 H 0.158 0.842 42 H 0.151 0.849 43 H 0.153 0.847 44 H 0.193 0.807 45 H 0.111 0.889 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.620 -26.118 -6.956 27.035 hybrid contribution -0.538 0.037 1.578 1.668 sum 0.082 -26.080 -5.377 26.629 Atomic orbital electron populations 1.21707 0.93486 1.00541 1.02934 1.21810 0.96594 0.96026 0.93602 1.20633 0.95677 0.87764 0.91818 1.42418 1.56761 1.10891 1.27553 1.19213 1.22785 0.87960 1.07051 0.91203 1.24735 1.00103 0.98284 0.97850 1.69661 1.36084 1.36217 1.16122 0.86199 0.77901 0.85143 0.76994 1.21803 1.21838 1.20812 1.22653 1.02014 0.94011 0.97826 1.22403 1.00883 0.98271 0.80439 1.48679 1.63273 1.07685 1.12491 1.16992 0.78405 0.81950 0.85235 1.90658 1.50224 1.84121 1.15431 1.22986 0.97042 0.95009 0.92896 1.72949 1.10895 1.15261 1.07170 1.72665 1.13075 0.94764 1.29439 1.24801 0.91456 0.99618 0.91580 1.18915 1.00621 0.94164 0.95621 1.20938 0.98452 0.97398 0.95074 1.21189 0.97312 0.98092 0.94790 1.21310 0.97783 0.92248 1.00787 1.22087 0.93953 1.02028 0.92681 1.18610 0.98693 0.92134 0.96075 1.22658 1.02193 0.76971 0.98465 0.93866 0.91095 0.92598 0.95986 0.95754 0.78040 0.93525 0.90196 0.90537 0.91123 0.88811 0.80299 0.84187 0.84886 0.84665 0.80715 0.88943 0.90110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 8.31 37.16 0.31 -1.83 16 2 C -0.08 -1.27 0.65 -152.81 -0.10 -1.37 16 3 C 0.17 3.30 5.11 -4.04 -0.02 3.28 16 4 N -0.73 -18.15 5.16 -59.90 -0.31 -18.46 16 5 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 6 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 7 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 8 N -0.93 -28.30 13.06 55.49 0.72 -27.57 16 9 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 10 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 11 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 C -0.13 -1.61 6.09 -25.36 -0.15 -1.77 16 14 C 0.10 1.33 6.00 -2.98 -0.02 1.31 16 15 N -0.59 -9.01 3.19 -171.07 -0.55 -9.56 16 16 C 0.59 9.38 7.86 -12.30 -0.10 9.28 16 17 O -0.53 -9.40 13.80 5.32 0.07 -9.33 16 18 C 0.08 1.09 6.85 -82.42 -0.56 0.53 16 19 N -0.23 -3.07 7.99 33.56 0.27 -2.80 16 20 N -0.27 -3.23 11.41 30.90 0.35 -2.88 16 21 C 0.10 0.88 11.20 -16.75 -0.19 0.69 16 22 C -0.09 -0.81 5.75 -106.85 -0.61 -1.43 16 23 C -0.10 -0.64 9.84 -39.55 -0.39 -1.03 16 24 C -0.09 -0.59 9.95 -39.87 -0.40 -0.99 16 25 C -0.10 -0.83 9.95 -39.83 -0.40 -1.23 16 26 C -0.09 -1.01 9.27 -39.66 -0.37 -1.38 16 27 C -0.05 -0.58 5.77 -106.56 -0.61 -1.20 16 28 C 0.12 1.99 5.65 -2.32 -0.01 1.98 16 29 H 0.04 0.67 8.07 -51.93 -0.42 0.26 16 30 H 0.07 1.37 6.69 -51.93 -0.35 1.02 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.02 0.43 8.10 -51.93 -0.42 0.01 16 33 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.38 10.09 6.21 -40.82 -0.25 9.83 16 35 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.08 0.94 7.85 -51.93 -0.41 0.53 16 37 H 0.08 0.89 7.87 -51.93 -0.41 0.49 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.09 1.21 6.10 -51.93 -0.32 0.89 16 40 H 0.18 0.79 8.06 -52.49 -0.42 0.37 16 41 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16 42 H 0.13 0.44 8.06 -52.49 -0.42 0.02 16 43 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 44 H 0.18 2.32 5.12 -52.48 -0.27 2.05 16 45 H 0.09 1.78 7.75 -51.93 -0.40 1.38 16 46 H 0.08 1.38 8.01 -51.93 -0.42 0.96 16 LS Contribution 373.77 15.07 5.63 5.63 Total: -1.00 -33.40 373.77 -8.86 -42.26 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -6.17 Total: 7.63 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -3.87 Total: -2.43 kcal Atomic # 7 Polarization: -61.76 SS G_CDS: 0.49 Total: -61.27 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.07 Total: -9.33 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.40 -8.86 -42.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724230013.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.807 kcal (2) G-P(sol) polarization free energy of solvation -33.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds