Wall clock time and date at job start Tue Mar 31 2020 23:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53005 * 110.79672 * 2 1 4 4 N 1.46497 * 109.47115 * 56.71044 * 3 2 1 5 5 C 1.36937 * 119.99779 * 179.97438 * 4 3 2 6 6 H 1.08002 * 120.00081 * 359.97438 * 5 4 3 7 7 C 1.38813 * 120.00028 * 180.02562 * 5 4 3 8 8 N 1.31623 * 119.99744 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00293 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47272 * 89.99838 * 9 7 5 11 11 H 1.48500 * 109.47116 * 209.99970 * 9 7 5 12 12 H 1.48497 * 109.46759 * 329.99774 * 9 7 5 13 13 C 1.54618 * 110.73968 * 236.71038 * 2 1 3 14 14 C 1.54004 * 105.04310 * 263.51293 * 13 2 1 15 15 N 1.47486 * 107.08353 * 1.30271 * 14 13 2 16 16 C 1.34779 * 127.02949 * 154.51903 * 15 14 13 17 17 O 1.21547 * 119.99505 * 180.02562 * 16 15 14 18 18 C 1.47903 * 120.00166 * 0.02562 * 16 15 14 19 19 N 1.32378 * 120.63918 * 5.65588 * 18 16 15 20 20 N 1.28085 * 123.18846 * 180.02562 * 19 18 16 21 21 C 1.31790 * 123.49479 * 0.02562 * 20 19 18 22 22 C 1.40407 * 119.13858 * 359.71934 * 21 20 19 23 23 C 1.40233 * 122.73232 * 179.69615 * 22 21 20 24 24 C 1.36253 * 119.36998 * 180.32507 * 23 22 21 25 25 C 1.39385 * 121.07436 * 0.27309 * 24 23 22 26 26 C 1.36362 * 121.08640 * 359.97438 * 25 24 23 27 27 C 1.39836 * 119.42028 * 0.02734 * 26 25 24 28 28 C 1.48114 * 105.93498 * 334.78420 * 15 14 13 29 29 H 1.08999 * 109.46814 * 183.28977 * 1 2 3 30 30 H 1.08995 * 109.46693 * 303.29117 * 1 2 3 31 31 H 1.08997 * 109.46878 * 63.29005 * 1 2 3 32 32 H 1.09006 * 109.46740 * 176.70876 * 3 2 1 33 33 H 1.08998 * 109.47334 * 296.70422 * 3 2 1 34 34 H 0.97001 * 120.00204 * 0.02562 * 4 3 2 35 35 H 0.97001 * 119.99612 * 180.02562 * 8 7 5 36 36 H 1.08995 * 110.32343 * 144.61718 * 13 2 1 37 37 H 1.09000 * 110.41416 * 22.45001 * 13 2 1 38 38 H 1.08999 * 109.90872 * 241.94628 * 14 13 2 39 39 H 1.08999 * 109.91229 * 120.66997 * 14 13 2 40 40 H 1.08001 * 120.43274 * 180.02562 * 21 20 19 41 41 H 1.07999 * 120.31215 * 0.59482 * 23 22 21 42 42 H 1.08000 * 119.46803 * 180.30061 * 24 23 22 43 43 H 1.07998 * 119.45685 * 180.02562 * 25 24 23 44 44 H 1.08004 * 120.29213 * 180.02562 * 26 25 24 45 45 H 1.08996 * 110.66527 * 157.50623 * 28 15 14 46 46 H 1.09003 * 110.66232 * 280.62368 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0733 1.4304 0.0000 4 7 1.5380 2.1560 1.1545 5 6 1.8881 3.4632 1.3640 6 1 2.5591 3.9591 0.6782 7 6 1.3813 4.1507 2.4582 8 7 0.5639 3.5463 3.2942 9 14 1.8582 5.9341 2.7436 10 1 0.8902 6.8223 2.0512 11 1 1.8419 6.2240 4.1999 12 1 3.2217 6.1738 2.2064 13 6 2.0776 -0.7937 -1.2087 14 6 2.3763 -2.2014 -0.6603 15 7 1.9872 -2.2038 0.7623 16 6 1.6222 -3.2696 1.5021 17 8 1.3243 -3.1242 2.6715 18 6 1.5840 -4.6160 0.8911 19 7 2.0114 -4.8072 -0.3472 20 7 2.0002 -5.9508 -0.9240 21 6 1.5632 -7.0521 -0.3470 22 6 1.0858 -6.9898 0.9719 23 6 0.5979 -8.1129 1.6556 24 6 0.1448 -7.9729 2.9329 25 6 0.1534 -6.7318 3.5674 26 6 0.6160 -5.6185 2.9302 27 6 1.0889 -5.7244 1.6185 28 6 2.0733 -0.7945 1.2098 29 1 -0.3633 -1.0260 0.0590 30 1 -0.3632 0.5641 0.8590 31 1 -0.3633 0.4619 -0.9180 32 1 3.1615 1.4057 0.0590 33 1 1.7706 1.9340 -0.9180 34 1 0.9362 1.7104 1.7711 35 1 0.2094 4.0268 4.0587 36 1 2.9910 -0.3313 -1.5828 37 1 1.3293 -0.8462 -1.9995 38 1 3.4403 -2.4184 -0.7545 39 1 1.7937 -2.9437 -1.2059 40 1 1.5767 -7.9914 -0.8800 41 1 0.5856 -9.0803 1.1757 42 1 -0.2267 -8.8376 3.4626 43 1 -0.2115 -6.6508 4.5806 44 1 0.6172 -4.6633 3.4342 45 1 1.4489 -0.6310 2.0880 46 1 3.1077 -0.5187 1.4152 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724230013.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:44 Heat of formation + Delta-G solvation = 49.112679 kcal Electronic energy + Delta-G solvation = -29169.521186 eV Core-core repulsion = 25252.457189 eV Total energy + Delta-G solvation = -3917.063997 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.65920 -41.15502 -39.39287 -39.03337 -36.52882 -34.72570 -34.18073 -32.86950 -32.29572 -31.39605 -30.46799 -28.31315 -27.57643 -26.31699 -25.39116 -25.04034 -23.77119 -23.43201 -21.27783 -20.21587 -19.71111 -19.22331 -18.98696 -17.92513 -17.36351 -17.21754 -17.02644 -16.62003 -16.13006 -15.68785 -15.63104 -15.46138 -15.21788 -15.13587 -14.87700 -14.59430 -14.50383 -13.99141 -13.66972 -13.62005 -13.52113 -13.29120 -13.05104 -13.00738 -12.80806 -12.70187 -12.60228 -12.29777 -12.14456 -12.03268 -11.76147 -11.70708 -11.50645 -11.39648 -10.94016 -10.86078 -10.80435 -10.44042 -9.86627 -9.54613 -8.96478 -7.92442 -5.20854 -1.17343 -0.50209 0.50002 1.42192 1.47577 1.49505 1.57844 1.59875 1.99368 2.57201 2.66182 2.83990 3.18381 3.30326 3.40311 3.47494 3.57574 3.60522 3.66959 3.83710 3.85878 4.15944 4.17035 4.21547 4.31827 4.32841 4.36333 4.41556 4.53952 4.65106 4.70585 4.74336 4.78159 4.93472 4.94635 4.97417 5.03946 5.06564 5.10955 5.18090 5.25764 5.30040 5.33086 5.40025 5.45609 5.52677 5.72709 6.29215 6.31134 6.77103 7.35808 7.53786 8.12494 8.34831 9.31296 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019955 B = 0.002526 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.839559 B =11083.646735 C =12170.666655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.071 4.071 3 C 0.169 3.831 4 N -0.744 5.744 5 C -0.239 4.239 6 H 0.079 0.921 7 C -0.079 4.079 8 N -0.972 5.972 9 Si 0.973 3.027 10 H -0.287 1.287 11 H -0.299 1.299 12 H -0.268 1.268 13 C -0.114 4.114 14 C 0.108 3.892 15 N -0.593 5.593 16 C 0.581 3.419 17 O -0.561 6.561 18 C 0.050 3.950 19 N -0.233 5.233 20 N -0.301 5.301 21 C 0.123 3.877 22 C -0.100 4.100 23 C -0.077 4.077 24 C -0.094 4.094 25 C -0.087 4.087 26 C -0.130 4.130 27 C -0.068 4.068 28 C 0.123 3.877 29 H 0.048 0.952 30 H 0.034 0.966 31 H 0.069 0.931 32 H 0.029 0.971 33 H 0.034 0.966 34 H 0.374 0.626 35 H 0.249 0.751 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.081 0.919 39 H 0.098 0.902 40 H 0.231 0.769 41 H 0.189 0.811 42 H 0.175 0.825 43 H 0.153 0.847 44 H 0.143 0.857 45 H 0.056 0.944 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.372 -30.502 -8.233 31.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.072 4.072 3 C 0.042 3.958 4 N -0.387 5.387 5 C -0.371 4.371 6 H 0.097 0.903 7 C -0.271 4.271 8 N -0.623 5.623 9 Si 0.803 3.197 10 H -0.214 1.214 11 H -0.226 1.226 12 H -0.193 1.193 13 C -0.153 4.153 14 C -0.014 4.014 15 N -0.323 5.323 16 C 0.369 3.631 17 O -0.440 6.440 18 C -0.108 4.108 19 N -0.069 5.069 20 N -0.133 5.133 21 C -0.049 4.049 22 C -0.107 4.107 23 C -0.096 4.096 24 C -0.113 4.113 25 C -0.106 4.106 26 C -0.150 4.150 27 C -0.075 4.075 28 C 0.001 3.999 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.088 0.912 32 H 0.047 0.953 33 H 0.052 0.948 34 H 0.206 0.794 35 H 0.058 0.942 36 H 0.117 0.883 37 H 0.114 0.886 38 H 0.099 0.901 39 H 0.116 0.884 40 H 0.247 0.753 41 H 0.206 0.794 42 H 0.192 0.808 43 H 0.171 0.829 44 H 0.161 0.839 45 H 0.074 0.926 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.014 -29.583 -9.098 30.967 hybrid contribution -0.680 0.871 2.240 2.498 sum 0.333 -28.711 -6.858 29.521 Atomic orbital electron populations 1.21601 0.93932 1.00344 1.01913 1.21669 0.96086 0.94441 0.95045 1.20798 0.95836 0.89131 0.90046 1.42645 1.56699 1.10517 1.28878 1.19658 1.21744 0.89112 1.06621 0.90308 1.25578 1.00872 1.02521 0.98144 1.69840 1.37918 1.37761 1.16771 0.85134 0.78140 0.80205 0.76255 1.21437 1.22572 1.19276 1.22647 1.03219 0.92960 0.96441 1.22496 1.01530 0.98473 0.78902 1.48734 1.63385 1.06744 1.13459 1.17484 0.77640 0.83019 0.84999 1.90645 1.51530 1.84921 1.16915 1.22648 1.00008 0.94239 0.93878 1.72823 1.10663 1.16696 1.06761 1.72601 1.15434 0.95291 1.29975 1.25570 0.87934 1.00221 0.91210 1.19248 1.01425 0.93909 0.96163 1.21519 0.95362 0.97999 0.94750 1.21654 0.96445 0.98152 0.95002 1.21648 0.95366 0.92199 1.01417 1.21865 0.97587 1.02182 0.93355 1.18802 0.99194 0.93080 0.96453 1.22413 1.01059 0.78724 0.97733 0.93310 0.94643 0.91217 0.95279 0.94844 0.79358 0.94195 0.88319 0.88607 0.90117 0.88380 0.75298 0.79414 0.80763 0.82886 0.83946 0.92564 0.90616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.14 8.31 71.98 0.60 -3.55 16 2 C -0.07 -2.33 0.65 -51.08 -0.03 -2.37 16 3 C 0.17 6.60 5.11 86.38 0.44 7.04 16 4 N -0.74 -38.15 5.16 -343.44 -1.77 -39.92 16 5 C -0.24 -13.50 9.99 84.03 0.84 -12.66 16 6 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 7 C -0.08 -4.65 5.50 84.86 0.47 -4.18 16 8 N -0.97 -61.35 13.06 21.65 0.28 -61.07 16 9 Si 0.97 47.16 29.55 68.60 2.03 49.18 16 10 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 11 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 12 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 13 C -0.11 -2.76 6.09 31.48 0.19 -2.57 16 14 C 0.11 2.76 6.00 86.53 0.52 3.28 16 15 N -0.59 -19.22 3.19 -813.42 -2.60 -21.81 16 16 C 0.58 20.23 7.86 86.80 0.68 20.91 16 17 O -0.56 -22.49 13.80 -3.86 -0.05 -22.54 16 18 C 0.05 1.46 6.85 42.43 0.29 1.75 16 19 N -0.23 -6.34 7.99 -47.74 -0.38 -6.73 16 20 N -0.30 -6.81 11.41 -56.16 -0.64 -7.45 16 21 C 0.12 1.77 11.20 85.23 0.95 2.73 16 22 C -0.10 -1.64 5.75 -21.31 -0.12 -1.76 16 23 C -0.08 -0.62 9.84 22.29 0.22 -0.40 16 24 C -0.09 -0.78 9.95 22.08 0.22 -0.56 16 25 C -0.09 -1.31 9.95 22.11 0.22 -1.09 16 26 C -0.13 -3.17 9.27 22.22 0.21 -2.96 16 27 C -0.07 -1.70 5.77 -21.12 -0.12 -1.83 16 28 C 0.12 4.45 5.65 86.61 0.49 4.94 16 29 H 0.05 1.59 8.07 -2.39 -0.02 1.57 16 30 H 0.03 1.46 6.69 -2.39 -0.02 1.44 16 31 H 0.07 2.16 8.14 -2.39 -0.02 2.15 16 32 H 0.03 1.12 8.10 -2.38 -0.02 1.10 16 33 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.37 20.77 6.21 -92.71 -0.58 20.19 16 35 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16 36 H 0.10 2.06 7.85 -2.39 -0.02 2.05 16 37 H 0.10 2.00 7.87 -2.39 -0.02 1.98 16 38 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.10 2.49 6.10 -2.39 -0.01 2.47 16 40 H 0.23 0.70 8.06 -2.91 -0.02 0.68 16 41 H 0.19 -0.26 8.06 -2.91 -0.02 -0.28 16 42 H 0.17 0.09 8.06 -2.91 -0.02 0.07 16 43 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 44 H 0.14 4.36 5.12 -2.91 -0.01 4.34 16 45 H 0.06 2.42 7.75 -2.39 -0.02 2.40 16 46 H 0.08 2.76 8.01 -2.39 -0.02 2.74 16 Total: -1.00 -79.00 373.77 3.37 -75.63 By element: Atomic # 1 Polarization: 27.53 SS G_CDS: 0.44 Total: 27.97 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: 6.06 Total: 6.73 kcal Atomic # 7 Polarization: -131.87 SS G_CDS: -5.11 Total: -136.98 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.05 Total: -22.54 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.18 kcal Total: -79.00 3.37 -75.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724230013.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.747 kcal (2) G-P(sol) polarization free energy of solvation -79.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds