Wall clock time and date at job start Tue Mar 31 2020 23:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30373 * 125.96973 * 2 1 4 4 N 1.39923 * 109.01992 * 180.28408 * 3 2 1 5 5 C 1.46502 * 125.74263 * 179.74841 * 4 3 2 6 6 C 1.34412 * 108.51658 * 359.71026 * 4 3 2 7 7 F 1.35098 * 126.34435 * 179.97438 * 6 4 3 8 8 C 1.38510 * 107.30985 * 0.02562 * 6 4 3 9 9 C 1.47171 * 126.45676 * 180.02562 * 8 6 4 10 10 O 1.21636 * 119.99907 * 90.02123 * 9 8 6 11 11 N 1.34770 * 119.99858 * 270.02302 * 9 8 6 12 12 C 1.46499 * 120.00300 * 185.16920 * 11 9 8 13 13 C 1.52996 * 109.52102 * 297.29714 * 12 11 9 14 14 O 1.42895 * 109.47288 * 305.74889 * 13 12 11 15 15 C 1.53044 * 109.49521 * 57.37684 * 12 11 9 16 16 C 1.53033 * 109.53790 * 58.58834 * 15 12 11 17 17 C 1.53195 * 109.31435 * 61.36517 * 16 15 12 18 18 N 1.46921 * 108.77174 * 305.36610 * 17 16 15 19 19 C 1.36943 * 120.62737 * 233.62654 * 18 17 16 20 20 H 1.08002 * 119.99890 * 150.48351 * 19 18 17 21 21 C 1.38819 * 120.00085 * 330.48210 * 19 18 17 22 22 N 1.31620 * 119.99695 * 343.76475 * 21 19 18 23 23 Si 1.86801 * 119.99930 * 163.76087 * 21 19 18 24 24 H 1.48498 * 109.46946 * 60.00057 * 23 21 19 25 25 H 1.48498 * 109.47051 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.46946 * 300.00329 * 23 21 19 27 27 C 1.46921 * 118.74337 * 53.60869 * 18 17 16 28 28 H 1.08992 * 109.47110 * 270.19456 * 1 2 3 29 29 H 1.08999 * 109.46438 * 30.18771 * 1 2 3 30 30 H 1.09001 * 109.47297 * 150.18934 * 1 2 3 31 31 H 1.08998 * 109.46956 * 269.95972 * 5 4 3 32 32 H 1.09003 * 109.46947 * 29.95626 * 5 4 3 33 33 H 1.09000 * 109.47279 * 149.95351 * 5 4 3 34 34 H 0.97007 * 120.00218 * 5.16186 * 11 9 8 35 35 H 1.09002 * 109.47331 * 65.74783 * 13 12 11 36 36 H 1.09001 * 109.47242 * 185.74270 * 13 12 11 37 37 H 0.96704 * 114.00224 * 180.02562 * 14 13 12 38 38 H 1.09002 * 109.46047 * 298.56526 * 15 12 11 39 39 H 1.08997 * 109.45636 * 178.61380 * 15 12 11 40 40 H 1.09005 * 109.49791 * 181.31548 * 16 15 12 41 41 H 1.09000 * 109.50060 * 301.41086 * 16 15 12 42 42 H 1.09008 * 109.58342 * 65.15030 * 17 16 15 43 43 H 1.09001 * 109.58944 * 185.57237 * 17 16 15 44 44 H 0.96994 * 119.99440 * 179.97438 * 22 21 19 45 45 H 1.09003 * 109.58717 * 66.17636 * 27 18 17 46 46 H 1.08999 * 109.58809 * 186.45922 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2728 1.0551 0.0000 4 7 3.6112 0.6472 -0.0066 5 6 4.7765 1.5352 -0.0139 6 6 3.6480 -0.6964 -0.0042 7 9 4.7576 -1.4670 -0.0093 8 6 2.3374 -1.1445 0.0033 9 6 1.8929 -2.5475 0.0087 10 8 1.7140 -3.1247 1.0644 11 7 1.6842 -3.1927 -1.1559 12 6 1.1341 -4.5505 -1.1528 13 6 2.1037 -5.4933 -0.4374 14 8 3.3972 -5.3900 -1.0358 15 6 -0.2124 -4.5544 -0.4254 16 6 -1.1726 -3.5868 -1.1208 17 6 -1.4011 -4.0489 -2.5634 18 7 -0.0979 -4.1874 -3.2275 19 6 0.1525 -3.5489 -4.4128 20 1 1.1587 -3.2441 -4.6599 21 6 -0.8870 -3.2934 -5.2967 22 7 -2.0333 -3.9267 -5.1651 23 14 -0.6588 -2.0509 -6.6728 24 1 0.4595 -2.4828 -7.5492 25 1 -1.9078 -1.9614 -7.4710 26 1 -0.3468 -0.7205 -6.0916 27 6 0.9318 -5.0236 -2.5957 28 1 -0.3633 0.0035 1.0276 29 1 -0.3632 0.8883 -0.5168 30 1 -0.3634 -0.8917 -0.5109 31 1 5.0604 1.7535 -1.0433 32 1 4.5285 2.4643 0.4994 33 1 5.6073 1.0485 0.4969 34 1 1.8980 -2.7580 -1.9964 35 1 2.1675 -5.2185 0.6155 36 1 1.7440 -6.5186 -0.5240 37 1 4.0643 -5.9619 -0.6318 38 1 -0.0675 -4.2417 0.6087 39 1 -0.6327 -5.5599 -0.4449 40 1 -2.1237 -3.5725 -0.5885 41 1 -0.7417 -2.5856 -1.1235 42 1 -1.9145 -5.0105 -2.5621 43 1 -2.0043 -3.3111 -3.0924 44 1 -2.7597 -3.7479 -5.7825 45 1 0.6086 -6.0646 -2.5970 46 1 1.8672 -4.9308 -3.1474 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724639828.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:08 Heat of formation + Delta-G solvation = -21.002293 kcal Electronic energy + Delta-G solvation = -32113.154137 eV Core-core repulsion = 27762.280503 eV Total energy + Delta-G solvation = -4350.873635 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.31811 -41.37807 -39.78815 -37.27643 -35.99539 -34.23315 -33.78831 -32.24656 -30.58584 -30.50191 -29.90552 -29.05926 -26.12671 -25.40990 -25.03174 -22.86285 -22.15939 -21.01079 -20.57464 -19.98604 -18.65925 -17.91972 -16.98505 -16.86091 -16.74398 -16.62462 -16.06102 -15.24073 -14.82090 -14.76035 -14.71137 -14.36091 -14.00210 -13.79935 -13.62554 -13.41069 -13.39647 -13.16248 -12.89582 -12.72597 -12.46929 -12.39230 -12.30207 -12.15280 -11.86545 -11.51977 -11.13997 -11.02390 -10.89432 -10.72931 -10.41208 -10.10881 -10.09184 -9.78319 -9.68850 -9.55457 -9.37396 -9.11359 -8.69853 -8.47385 -8.42165 -6.67142 -5.80618 -3.25300 1.34340 1.85591 2.29405 2.89777 3.37034 3.43058 3.44073 3.67414 3.83089 4.29526 4.46820 4.56121 4.70715 4.82316 5.01738 5.08924 5.16209 5.26381 5.35138 5.40193 5.57913 5.63465 5.65739 5.70174 5.72793 5.83474 5.89982 6.00132 6.07371 6.31033 6.35901 6.42480 6.51414 6.62663 6.66769 6.77895 6.82817 6.90706 7.13151 7.33587 7.39480 7.66097 7.77645 7.91409 8.10708 8.43164 8.68634 9.19404 9.81350 10.39001 11.27428 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.010131 B = 0.004866 C = 0.004067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2763.032981 B = 5752.297239 C = 6883.459336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.138 3.862 3 N -0.275 5.275 4 N -0.378 5.378 5 C 0.095 3.905 6 C 0.288 3.712 7 F -0.089 7.089 8 C -0.280 4.280 9 C 0.600 3.400 10 O -0.545 6.545 11 N -0.675 5.675 12 C 0.166 3.834 13 C 0.066 3.934 14 O -0.564 6.564 15 C -0.121 4.121 16 C -0.139 4.139 17 C 0.171 3.829 18 N -0.587 5.587 19 C -0.256 4.256 20 H 0.064 0.936 21 C 0.008 3.992 22 N -0.899 5.899 23 Si 0.900 3.100 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.284 1.284 27 C 0.148 3.852 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.407 0.593 35 H 0.062 0.938 36 H 0.046 0.954 37 H 0.369 0.631 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.050 0.950 41 H 0.056 0.944 42 H 0.018 0.982 43 H 0.085 0.915 44 H 0.254 0.746 45 H 0.032 0.968 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.055 5.755 11.663 16.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.029 4.029 3 N -0.098 5.098 4 N -0.163 5.163 5 C -0.046 4.046 6 C 0.142 3.858 7 F -0.068 7.068 8 C -0.296 4.296 9 C 0.384 3.616 10 O -0.423 6.423 11 N -0.323 5.323 12 C 0.078 3.922 13 C -0.013 4.013 14 O -0.368 6.368 15 C -0.160 4.160 16 C -0.178 4.178 17 C 0.045 3.955 18 N -0.310 5.310 19 C -0.385 4.385 20 H 0.081 0.919 21 C -0.191 4.191 22 N -0.543 5.543 23 Si 0.730 3.270 24 H -0.209 1.209 25 H -0.217 1.217 26 H -0.210 1.210 27 C 0.021 3.979 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.109 0.891 31 H 0.101 0.899 32 H 0.117 0.883 33 H 0.108 0.892 34 H 0.242 0.758 35 H 0.080 0.920 36 H 0.064 0.936 37 H 0.215 0.785 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.036 0.964 43 H 0.103 0.897 44 H 0.064 0.936 45 H 0.049 0.951 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.637 7.097 11.864 16.852 hybrid contribution 0.960 -0.574 -0.821 1.387 sum 10.597 6.524 11.043 16.638 Atomic orbital electron populations 1.20434 0.85102 1.04820 1.03759 1.22212 0.97242 0.87971 0.95439 1.77292 0.84044 1.21225 1.27246 1.48623 1.07255 1.02554 1.57917 1.22014 0.83745 0.94603 1.04240 1.17799 0.83429 0.81760 1.02844 1.91651 1.49714 1.71603 1.93855 1.19857 0.90163 0.96178 1.23415 1.16919 0.76975 0.83541 0.84174 1.90682 1.52742 1.67380 1.31522 1.45770 1.62600 1.15800 1.08169 1.21021 0.91266 0.80774 0.99135 1.22665 0.83378 0.97914 0.97357 1.86513 1.20110 1.68292 1.61895 1.21757 0.93937 1.00413 0.99864 1.22178 0.97294 0.98834 0.99479 1.20794 0.87523 0.99209 0.87937 1.44022 1.10855 1.53702 1.22386 1.19073 0.94449 1.30685 0.94298 0.91873 1.25044 0.97279 0.99466 0.97295 1.70019 1.04424 1.41307 1.38530 0.86421 0.76917 0.81749 0.81962 1.20941 1.21663 1.21001 1.21093 0.94059 0.93607 0.89164 0.89691 0.89929 0.89070 0.89894 0.88320 0.89241 0.75777 0.91982 0.93582 0.78531 0.90990 0.91917 0.93143 0.92520 0.96411 0.89712 0.93577 0.95054 0.91560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.08 10.28 36.01 0.37 -0.71 16 2 C 0.14 2.09 7.26 -82.01 -0.60 1.49 16 3 N -0.28 -4.01 12.49 33.91 0.42 -3.59 16 4 N -0.38 -4.88 3.98 -67.94 -0.27 -5.15 16 5 C 0.09 0.73 11.43 59.85 0.68 1.41 16 6 C 0.29 4.26 8.70 -16.32 -0.14 4.11 16 7 F -0.09 -1.26 17.31 2.25 0.04 -1.22 16 8 C -0.28 -4.56 5.89 -104.97 -0.62 -5.18 16 9 C 0.60 10.65 6.68 -12.64 -0.08 10.56 16 10 O -0.54 -10.66 13.43 5.25 0.07 -10.59 16 11 N -0.67 -12.03 3.94 -48.64 -0.19 -12.22 16 12 C 0.17 2.96 0.45 -131.70 -0.06 2.90 16 13 C 0.07 1.05 5.67 37.16 0.21 1.26 16 14 O -0.56 -8.61 13.09 -35.23 -0.46 -9.07 16 15 C -0.12 -2.14 4.43 -26.69 -0.12 -2.26 16 16 C -0.14 -2.60 5.93 -26.61 -0.16 -2.76 16 17 C 0.17 3.89 5.29 -3.71 -0.02 3.87 16 18 N -0.59 -13.83 2.90 -172.32 -0.50 -14.33 16 19 C -0.26 -6.64 9.57 -15.05 -0.14 -6.79 16 20 H 0.06 1.62 7.88 -52.49 -0.41 1.21 16 21 C 0.01 0.22 4.92 -17.43 -0.09 0.14 16 22 N -0.90 -25.22 11.26 55.49 0.62 -24.60 16 23 Si 0.90 21.16 29.58 -169.99 -5.03 16.13 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 C 0.15 3.03 5.07 -3.72 -0.02 3.01 16 28 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.09 1.30 5.90 -51.93 -0.31 1.00 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.41 7.62 8.46 -40.82 -0.35 7.27 16 35 H 0.06 1.03 6.37 -51.93 -0.33 0.70 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.37 3.88 9.12 45.56 0.42 4.29 16 38 H 0.07 1.29 6.20 -51.93 -0.32 0.97 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.06 1.07 5.35 -51.93 -0.28 0.79 16 42 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 43 H 0.08 2.16 6.14 -51.93 -0.32 1.85 16 44 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 45 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.07 1.40 7.80 -51.93 -0.40 0.99 16 LS Contribution 373.82 15.07 5.63 5.63 Total: -1.00 -32.09 373.82 -6.11 -38.20 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -5.67 Total: 9.76 kcal Atomic # 6 Polarization: 11.84 SS G_CDS: -0.78 Total: 11.06 kcal Atomic # 7 Polarization: -59.98 SS G_CDS: 0.09 Total: -59.90 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -0.39 Total: -19.66 kcal Atomic # 9 Polarization: -1.26 SS G_CDS: 0.04 Total: -1.22 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.13 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.09 -6.11 -38.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724639828.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.195 kcal (2) G-P(sol) polarization free energy of solvation -32.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds