Wall clock time and date at job start Tue Mar 31 2020 23:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30373 * 125.96973 * 2 1 4 4 N 1.39923 * 109.01992 * 180.28408 * 3 2 1 5 5 C 1.46502 * 125.74263 * 179.74841 * 4 3 2 6 6 C 1.34412 * 108.51658 * 359.71026 * 4 3 2 7 7 F 1.35098 * 126.34435 * 179.97438 * 6 4 3 8 8 C 1.38510 * 107.30985 * 0.02562 * 6 4 3 9 9 C 1.47171 * 126.45676 * 180.02562 * 8 6 4 10 10 O 1.21636 * 119.99907 * 90.02123 * 9 8 6 11 11 N 1.34770 * 119.99858 * 270.02302 * 9 8 6 12 12 C 1.46499 * 120.00300 * 185.16920 * 11 9 8 13 13 C 1.52996 * 109.52102 * 297.29714 * 12 11 9 14 14 O 1.42895 * 109.47288 * 305.74889 * 13 12 11 15 15 C 1.53044 * 109.49521 * 57.37684 * 12 11 9 16 16 C 1.53033 * 109.53790 * 58.58834 * 15 12 11 17 17 C 1.53195 * 109.31435 * 61.36517 * 16 15 12 18 18 N 1.46921 * 108.77174 * 305.36610 * 17 16 15 19 19 C 1.36943 * 120.62737 * 233.62654 * 18 17 16 20 20 H 1.08002 * 119.99890 * 150.48351 * 19 18 17 21 21 C 1.38819 * 120.00085 * 330.48210 * 19 18 17 22 22 N 1.31620 * 119.99695 * 343.76475 * 21 19 18 23 23 Si 1.86801 * 119.99930 * 163.76087 * 21 19 18 24 24 H 1.48498 * 109.46946 * 60.00057 * 23 21 19 25 25 H 1.48498 * 109.47051 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.46946 * 300.00329 * 23 21 19 27 27 C 1.46921 * 118.74337 * 53.60869 * 18 17 16 28 28 H 1.08992 * 109.47110 * 270.19456 * 1 2 3 29 29 H 1.08999 * 109.46438 * 30.18771 * 1 2 3 30 30 H 1.09001 * 109.47297 * 150.18934 * 1 2 3 31 31 H 1.08998 * 109.46956 * 269.95972 * 5 4 3 32 32 H 1.09003 * 109.46947 * 29.95626 * 5 4 3 33 33 H 1.09000 * 109.47279 * 149.95351 * 5 4 3 34 34 H 0.97007 * 120.00218 * 5.16186 * 11 9 8 35 35 H 1.09002 * 109.47331 * 65.74783 * 13 12 11 36 36 H 1.09001 * 109.47242 * 185.74270 * 13 12 11 37 37 H 0.96704 * 114.00224 * 180.02562 * 14 13 12 38 38 H 1.09002 * 109.46047 * 298.56526 * 15 12 11 39 39 H 1.08997 * 109.45636 * 178.61380 * 15 12 11 40 40 H 1.09005 * 109.49791 * 181.31548 * 16 15 12 41 41 H 1.09000 * 109.50060 * 301.41086 * 16 15 12 42 42 H 1.09008 * 109.58342 * 65.15030 * 17 16 15 43 43 H 1.09001 * 109.58944 * 185.57237 * 17 16 15 44 44 H 0.96994 * 119.99440 * 179.97438 * 22 21 19 45 45 H 1.09003 * 109.58717 * 66.17636 * 27 18 17 46 46 H 1.08999 * 109.58809 * 186.45922 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2728 1.0551 0.0000 4 7 3.6112 0.6472 -0.0066 5 6 4.7765 1.5352 -0.0139 6 6 3.6480 -0.6964 -0.0042 7 9 4.7576 -1.4670 -0.0093 8 6 2.3374 -1.1445 0.0033 9 6 1.8929 -2.5475 0.0087 10 8 1.7140 -3.1247 1.0644 11 7 1.6842 -3.1927 -1.1559 12 6 1.1341 -4.5505 -1.1528 13 6 2.1037 -5.4933 -0.4374 14 8 3.3972 -5.3900 -1.0358 15 6 -0.2124 -4.5544 -0.4254 16 6 -1.1726 -3.5868 -1.1208 17 6 -1.4011 -4.0489 -2.5634 18 7 -0.0979 -4.1874 -3.2275 19 6 0.1525 -3.5489 -4.4128 20 1 1.1587 -3.2441 -4.6599 21 6 -0.8870 -3.2934 -5.2967 22 7 -2.0333 -3.9267 -5.1651 23 14 -0.6588 -2.0509 -6.6728 24 1 0.4595 -2.4828 -7.5492 25 1 -1.9078 -1.9614 -7.4710 26 1 -0.3468 -0.7205 -6.0916 27 6 0.9318 -5.0236 -2.5957 28 1 -0.3633 0.0035 1.0276 29 1 -0.3632 0.8883 -0.5168 30 1 -0.3634 -0.8917 -0.5109 31 1 5.0604 1.7535 -1.0433 32 1 4.5285 2.4643 0.4994 33 1 5.6073 1.0485 0.4969 34 1 1.8980 -2.7580 -1.9964 35 1 2.1675 -5.2185 0.6155 36 1 1.7440 -6.5186 -0.5240 37 1 4.0643 -5.9619 -0.6318 38 1 -0.0675 -4.2417 0.6087 39 1 -0.6327 -5.5599 -0.4449 40 1 -2.1237 -3.5725 -0.5885 41 1 -0.7417 -2.5856 -1.1235 42 1 -1.9145 -5.0105 -2.5621 43 1 -2.0043 -3.3111 -3.0924 44 1 -2.7597 -3.7479 -5.7825 45 1 0.6086 -6.0646 -2.5970 46 1 1.8672 -4.9308 -3.1474 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724639828.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:07 Heat of formation + Delta-G solvation = -44.520250 kcal Electronic energy + Delta-G solvation = -32114.173953 eV Core-core repulsion = 27762.280503 eV Total energy + Delta-G solvation = -4351.893450 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.43453 -42.48755 -41.19940 -38.78305 -37.35698 -35.43611 -35.21213 -33.86693 -32.31285 -31.91810 -31.01072 -30.23375 -27.27224 -27.06241 -26.54836 -24.10761 -23.82550 -22.41467 -21.86553 -21.29044 -20.12180 -19.09832 -18.61610 -18.16389 -17.99516 -17.81779 -17.16237 -16.86466 -16.54957 -16.04138 -15.77432 -15.72248 -15.66482 -14.97015 -14.93194 -14.66850 -14.53116 -14.48144 -14.24896 -14.12151 -13.89506 -13.65618 -13.42431 -13.28483 -13.17132 -13.01497 -12.87035 -12.77769 -12.44979 -12.23084 -12.03542 -11.94616 -11.61991 -11.45766 -11.22761 -11.04158 -10.56336 -10.44106 -10.40100 -9.85576 -9.82807 -8.61558 -7.82884 -5.29340 0.23879 0.89682 1.14323 1.49315 1.51232 1.55389 1.57112 2.36038 2.53622 2.75152 3.29748 3.33044 3.34874 3.68778 3.75076 3.86529 4.07964 4.13498 4.20245 4.21321 4.29050 4.31076 4.40216 4.56788 4.57976 4.63658 4.69777 4.73302 4.78855 4.86394 4.91065 4.96970 5.07630 5.12588 5.22461 5.28329 5.36226 5.59535 5.64552 5.67937 5.71685 5.83373 6.24875 6.43164 6.67885 6.95231 7.19395 7.29329 7.88040 8.41494 9.22966 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.010131 B = 0.004866 C = 0.004067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2763.032981 B = 5752.297239 C = 6883.459336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.129 3.871 3 N -0.283 5.283 4 N -0.368 5.368 5 C 0.081 3.919 6 C 0.288 3.712 7 F -0.087 7.087 8 C -0.309 4.309 9 C 0.606 3.394 10 O -0.565 6.565 11 N -0.675 5.675 12 C 0.168 3.832 13 C 0.075 3.925 14 O -0.579 6.579 15 C -0.115 4.115 16 C -0.127 4.127 17 C 0.181 3.819 18 N -0.599 5.599 19 C -0.257 4.257 20 H 0.064 0.936 21 C -0.040 4.040 22 N -0.930 5.930 23 Si 0.958 3.042 24 H -0.279 1.279 25 H -0.296 1.296 26 H -0.279 1.279 27 C 0.153 3.847 28 H 0.099 0.901 29 H 0.095 0.905 30 H 0.075 0.925 31 H 0.098 0.902 32 H 0.116 0.884 33 H 0.110 0.890 34 H 0.401 0.599 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.391 0.609 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.055 0.945 42 H -0.002 1.002 43 H 0.054 0.946 44 H 0.249 0.751 45 H 0.030 0.970 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.572 6.747 12.540 18.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.037 4.037 3 N -0.106 5.106 4 N -0.153 5.153 5 C -0.057 4.057 6 C 0.140 3.860 7 F -0.066 7.066 8 C -0.325 4.325 9 C 0.391 3.609 10 O -0.445 6.445 11 N -0.322 5.322 12 C 0.081 3.919 13 C -0.004 4.004 14 O -0.386 6.386 15 C -0.153 4.153 16 C -0.166 4.166 17 C 0.055 3.945 18 N -0.322 5.322 19 C -0.387 4.387 20 H 0.082 0.918 21 C -0.236 4.236 22 N -0.575 5.575 23 Si 0.787 3.213 24 H -0.205 1.205 25 H -0.223 1.223 26 H -0.205 1.205 27 C 0.027 3.973 28 H 0.118 0.882 29 H 0.113 0.887 30 H 0.094 0.906 31 H 0.117 0.883 32 H 0.134 0.866 33 H 0.128 0.872 34 H 0.236 0.764 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.240 0.760 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.074 0.926 42 H 0.016 0.984 43 H 0.072 0.928 44 H 0.058 0.942 45 H 0.048 0.952 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 11.202 8.098 12.764 18.814 hybrid contribution 0.610 -0.879 -1.081 1.521 sum 11.811 7.218 11.682 18.113 Atomic orbital electron populations 1.20456 0.84181 1.04581 1.04648 1.22447 0.98031 0.87675 0.95513 1.77250 0.84841 1.21105 1.27412 1.49018 1.07840 1.02399 1.56040 1.22505 0.82581 0.94741 1.05911 1.17771 0.83082 0.82620 1.02555 1.91654 1.49424 1.71697 1.93805 1.19843 0.91306 0.95662 1.25730 1.17035 0.76265 0.84021 0.83570 1.90660 1.53728 1.68096 1.32029 1.45767 1.62594 1.15784 1.08064 1.20934 0.92239 0.81426 0.97343 1.22496 0.83393 0.98116 0.96439 1.86458 1.20427 1.69319 1.62368 1.21698 0.93516 1.00509 0.99597 1.22012 0.98676 0.98929 0.96953 1.20583 0.86774 0.97274 0.89867 1.44177 1.11575 1.54292 1.22147 1.19341 0.94411 1.30102 0.94866 0.91826 1.25684 0.97225 1.01196 0.99539 1.70160 1.05042 1.42848 1.39475 0.85487 0.76421 0.79871 0.79497 1.20534 1.22272 1.20492 1.21087 0.92622 0.93124 0.90475 0.88240 0.88664 0.90649 0.88312 0.86562 0.87178 0.76419 0.92491 0.91766 0.76016 0.90703 0.91014 0.91321 0.92636 0.98400 0.92791 0.94197 0.95168 0.92402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.02 10.28 71.24 0.73 -1.29 16 2 C 0.13 3.78 7.26 43.56 0.32 4.10 16 3 N -0.28 -7.78 12.49 -46.64 -0.58 -8.36 16 4 N -0.37 -8.75 3.98 -368.85 -1.47 -10.22 16 5 C 0.08 1.01 11.43 127.77 1.46 2.47 16 6 C 0.29 8.09 8.70 84.36 0.73 8.83 16 7 F -0.09 -2.32 17.31 44.97 0.78 -1.54 16 8 C -0.31 -9.81 5.89 -20.09 -0.12 -9.93 16 9 C 0.61 21.07 6.68 86.59 0.58 21.65 16 10 O -0.57 -21.59 13.43 -4.15 -0.06 -21.65 16 11 N -0.67 -23.68 3.94 -426.04 -1.68 -25.36 16 12 C 0.17 5.85 0.45 3.68 0.00 5.85 16 13 C 0.07 2.24 5.67 71.98 0.41 2.65 16 14 O -0.58 -16.64 13.09 -148.98 -1.95 -18.59 16 15 C -0.11 -3.93 4.43 30.62 0.14 -3.79 16 16 C -0.13 -4.70 5.93 30.67 0.18 -4.52 16 17 C 0.18 8.36 5.29 86.36 0.46 8.81 16 18 N -0.60 -28.48 2.90 -699.09 -2.03 -30.51 16 19 C -0.26 -13.47 9.57 84.03 0.80 -12.66 16 20 H 0.06 3.27 7.88 -2.91 -0.02 3.25 16 21 C -0.04 -2.17 4.92 84.86 0.42 -1.76 16 22 N -0.93 -53.30 11.26 21.65 0.24 -53.06 16 23 Si 0.96 43.87 29.58 68.60 2.03 45.90 16 24 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 25 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 26 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 27 C 0.15 6.22 5.07 86.36 0.44 6.66 16 28 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.07 2.13 5.90 -2.39 -0.01 2.12 16 31 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.40 14.98 8.46 -92.70 -0.78 14.19 16 35 H 0.06 1.80 6.37 -2.39 -0.02 1.79 16 36 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.39 7.35 9.12 -74.05 -0.68 6.68 16 38 H 0.07 2.58 6.20 -2.39 -0.01 2.57 16 39 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 41 H 0.06 2.09 5.35 -2.39 -0.01 2.07 16 42 H 0.00 -0.10 8.14 -2.38 -0.02 -0.12 16 43 H 0.05 2.83 6.14 -2.39 -0.01 2.82 16 44 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 45 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.06 2.43 7.80 -2.39 -0.02 2.41 16 Total: -1.00 -68.71 373.82 1.42 -67.29 By element: Atomic # 1 Polarization: 29.44 SS G_CDS: -0.42 Total: 29.03 kcal Atomic # 6 Polarization: 20.53 SS G_CDS: 6.55 Total: 27.07 kcal Atomic # 7 Polarization: -121.99 SS G_CDS: -5.52 Total: -127.50 kcal Atomic # 8 Polarization: -38.24 SS G_CDS: -2.01 Total: -40.24 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.78 Total: -1.54 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -68.71 1.42 -67.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724639828.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.771 kcal (2) G-P(sol) polarization free energy of solvation -68.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds